>VHM716 (VHM716Q) /CSM/VH/VHM7-A/VHM716Q.Seq.d/
XXXXXXXXXXTCAAGAGAAAGTTACCNCCATACGCTTCCAAGTTCTTTGAAATGTGTTTG
AAACTAGTTGCCGATCATGGTCCATGTGTTAGTGGTGCTCATAATACAATCGTTGCTGCT
CGTGCTGGTAAGGATTTAGTATCAAGTCTTGTTTCAGGTTTATTAACAATTGGACCACGT
TTTGGTGGTGCCATCGATGATAGTGCTCGTGTATTCCAAGATGCAGTCGATAACNNATTT
NCAACCATCACAATTTGTTGAAGGTATGAAATCAAAGGGTAAAAGAATTCCAGGTATTGG
TCATTTAATTAAATCTGCCGATGACCATCGATAANAGAGTAGTATTATTANAAGATTATG
CTTTCACTCATTTNTCATCACACAAAATATTTAGAATACGCATTGGAAGTTGAAANATAT
ACCCTTCAAAAAGCAAATAATTTAATTTTAAATGTTGATGGTTGTATTGGTGTATTATNN
TTAGATTTATTACATTCATCCGGTTTATTCACTCNACATGAAATTAAAGAAATTATAGAT
GTTGGTTATTTAAATGGTTTCTTTATTGTCGGTAGAAGTGTTGGTTTAATCGGTCACGCN
TTAGATCAACGTAGAAATAAA

---krklppyaskffemclklvadhgpcvsgahntivaaragkdlvsslvsglltigprf
ggaiddsarvfqdavdnxfxtitic*ryeikg*knsrywsfn*icr*psixe*YYXKIML
SLIXHHTKYLEYALEVEXYTLQKANNLILNVDGCIGVLXLDLLHSSGLFTXHEIKEIIDV
GYLNGFFIVGRSVGLIGHALDQRRNK

Frame A:
---qekvtxirfqvl*nvfetscrswsmc*wcs*ynrccscw*gfsikscfrfinnwttf
wwchr**csciprcsr*xixnhhnllkv*nqrvkefqvlvi*lnlpmtidxrvvllxdya
fthxsshkifririgs*xiypsksk*fnfkc*wlywcixxrfitfirfihst*n*rnyrc
wlfkwflycr*kcwfnrsrxrst*k*


Frame B:
---krklppyaskffemclklvadhgpcvsgahntivaaragkdlvsslvsglltigprf
ggaiddsarvfqdavdnxfxtitic*ryeikg*knsrywsfn*icr*psixe*YYXKIML
SLIXHHTKYLEYALEVEXYTLQKANNLILNVDGCIGVLXLDLLHSSGLFTXHEIKEIIDV
GYLNGFFIVGRSVGLIGHALDQRRNK


Frame C:
---resyxhtlpsslkcv*n*lpimvhvlvvliiqslllvlvri*yqvlfqvy*qldhvl
vvpsmivlvyskmqsitxxqpsqfvegmkskgkripgighliksaddhr*xssiixrlcf
hsfxitqni*nthwklkxipfkkqii*f*mlmvvlvyyx*iyyihpvyslxmklkkl*ml
vi*mvsllsvevlv*svtx*invei

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHM716 (VHM716Q) /CSM/VH/VHM7-A/VHM716Q.Seq.d/                       1140   0.0
VHN804 (VHN804Q) /CSM/VH/VHN8-A/VHN804Q.Seq.d/                       1082   0.0
VHI728 (VHI728Q) /CSM/VH/VHI7-B/VHI728Q.Seq.d/                       1082   0.0
VHB747 (VHB747Q) /CSM/VH/VHB7-B/VHB747Q.Seq.d/                       1082   0.0
VHA674 (VHA674Q) /CSM/VH/VHA6-D/VHA674Q.Seq.d/                       1082   0.0
VHA368 (VHA368Q) /CSM/VH/VHA3-C/VHA368Q.Seq.d/                       1082   0.0
CHL239 (CHL239Q) /CSM/CH/CHL2-B/CHL239Q.Seq.d/                       1082   0.0
CHE602 (CHE602Q) /CSM/CH/CHE6-A/CHE602Q.Seq.d/                       1082   0.0
VFK504 (VFK504Q) /CSM/VF/VFK5-A/VFK504Q.Seq.d/                       1061   0.0
VHP546 (VHP546Q) /CSM/VH/VHP5-B/VHP546Q.Seq.d/                       1041   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CF436628|CF436628.1 EST672973 normalized cDNA library of onion Allium cepa cDNA clone ACACX24, mRNA sequence.    74   3e-09  1
CD473416|CD473416.1 nad03-8ms1-f12 Nad03 Nuphar advena cDNA clone nad03-8ms1-f12 5', mRNA sequence.    68   7e-09  2
BG523907|BG523907.1 36-76 Stevia field grown leaf cDNA Stevia rebaudiana cDNA 5', mRNA sequence.    60   1e-08  2
BE608288|BE608288.1 sq27g07.y1 Gm-c1046 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1046-2101 5' similar to WP:D1005.1 CE06997 ATP CITRATE LYASE ;, mRNA sequence.    56   9e-08  2
BU025332|BU025332.1 QHF8P02.yg.ab1 QH_EFGHJ sunflower RHA280 Helianthus annuus cDNA clone QHF8P02, mRNA sequence.    64   1e-07  2
BU024390|BU024390.1 QHF2h04.yg.ab1 QH_EFGHJ sunflower RHA280 Helianthus annuus cDNA clone QHF2h04, mRNA sequence.    64   1e-07  2
A83051|A83051.1 Sequence 58 from Patent WO9853085.                 44   2e-07  3
Z99984|Z99984.1 Musa acuminata mRNA for unknown ripening-related protein (clone pBAN EU66).    44   2e-07  3
BG652208|BG652208.1 sad75f02.y1 Gm-c1051 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1051-6028 5' similar to TR:Q9XFY7 Q9XFY7 PUTATIVE ATP-DEPENDENT CITRATE LYASE ;, mRNA sequence.    50   5e-06  2
AI960989|AI960989.1 sc93f08.y1 Gm-c1019 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1019-928 5' similar to WP:D1005.1 CE06997 ATP CITRATE LYASE ;, mRNA sequence.    50   5e-06  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54YA0) RecName: Full=Probable ATP-citrate synthase;          E...   283   4e-75
AP002883_22(AP002883|pid:none) Oryza sativa Japonica Group genom...   213   5e-54
AJ344107_1(AJ344107|pid:none) Lupinus albus mRNA for ATP citrate...   213   5e-54
AC020580_2(AC020580|pid:none) Arabidopsis thaliana chromosome 3 ...   211   1e-53
AB023034_12(AB023034|pid:none) Arabidopsis thaliana genomic DNA,...   211   1e-53
EF571302_1(EF571302|pid:none) Glycyrrhiza uralensis ATP citrate ...   211   1e-53
AF290958_1(AF290958|pid:none) Capsicum annuum ATP:citrate lyase ...   208   1e-52
AJ243483_1(AJ243483|pid:none) Cyanophora paradoxa mRNA for ATP c...   196   6e-49
FN357308_19(FN357308|pid:none) Schistosoma mansoni genome sequen...   185   8e-46
(P53585) RecName: Full=Probable ATP-citrate synthase;          E...   184   2e-45

 psg: 0.89  gvh: 0.62  alm: 0.32  top: 0.53  tms: 0.07  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.74  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	 20.0 %: endoplasmic reticulum
	 16.0 %: Golgi
	 16.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for VHM716 is cyt

>VHM716Z.Seq
NNNNNNNNNNTCAAGAGAAAGTTACCNCCATACGCTTCCAAGTTCTTTGAAATGTGTTTG
AAACTAGTTGCCGATCATGGTCCATGTGTTAGTGGTGCTCATAATACAATCGTTGCTGCT
CGTGCTGGTAAGGATTTAGTATCAAGTCTTGTTTCAGGTTTATTAACAATTGGACCACGT
TTTGGTGGTGCCATCGATGATAGTGCTCGTGTATTCCAAGATGCAGTCGATAACNNATTT
NCAACCATCACAATTTGTTGAAGGTATGAAATCAAAGGGTAAAAGAATTCCAGGTATTGG
TCATTTAATTAAATCTGCCGATGACCATCGATAANAGAGTAGTATTATTANAAGATTATG
CTTTCACTCATTTNTCATCACACAAAATATTTAGAATACGCATTGGAAGTTGAAANATAT
ACCCTTCAAAAAGCAAATAATTTAATTTTAAATGTTGATGGTTGTATTGGTGTATTATNN
TTAGATTTATTACATTCATCCGGTTTATTCACTCNACATGAAATTAAAGAAATTATAGAT
GTTGGTTATTTAAATGGTTTCTTTATTGTCGGTAGAAGTGTTGGTTTAATCGGTCACGCN
TTAGATCAACGTAGAAATAAA