AFO611
Library AF
(Link to library)
Clone ID AFO611
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFO611Z
(Link to Original site)
Representative DNA sequence
>AFO611 (AFO611Q) /CSM/AF/AFO6-A/AFO611Q.Seq.d/
XXXXXXXXXXTTTTCGATGAAGAAAAGAAAATTATTAAAGTTACATNTGAAGGTGAAACT
GTAACATGTGATAAAATTGTTTGTGATCCATCATATTTCCCAAATAAAGTTCAAAANAAA
GGTAAAATTATTCGTTCAATTTGTATTTTGAATGGTCCAATTCCATNTGCTGATAANAAA
TTTGAATCNCTCCAAATCATTATCCCNCAAAAACAAGTTAAACGTCAATCAGATATGNAC
GTTGGTGTTATGTCATCCGCTCATTGNGTCTGTCCAAAGGGTAAANACGTTGCCATCGTT
TCAGCCNCTGTTGAAACCAATGAACCANANAAAGAATTAGCNCCAGCTTACGCTTTATTA
GGTCCAATTCAANANAAATTTGTCTANATTTCTGATTTCATTGAACCAANTGCTGATGGN
ACNGCCGACAATGTTTTCATCTCAAAATCANATGATGCTACCTCNCNCTTTGAAACCNCN
TGTGAANATGTCATGGATATGGACAAGCGAATCNCTGGTAAAGATTTAGTTCNCNCTGNT
CATCCAAANATTCTTAAACAACAAGAAGAAGCT
sequence update 2001. 6. 1
Translated Amino Acid sequence
---FDEEKKIIKVTXEGETVTCDKIVCDPSYFPNKVQXKGKIIRSICILNGPIPXADXKF
ESLQIIIPQKQVKRQSDMXVGVMSSAHXVCPKGKXVAIVSAXVETNEPXKELAPAYALLG
PIQXKFVXISDFIEPXADGTADNVFISKSXDATSXFETXCEXVMDMDKRIXGKDLVXXXH
PXILKQQEEA


Translated Amino Acid sequence (All Frames)
Frame A:
---fr*rkeny*syx*r*ncnm**ncl*siifpk*sskxr*nysfnlyfewsnsxc**xi
*ixpnhypxkts*tsiryxrwcyvirslxlskg*xrchrfsxc*nq*txxrisxslrfir
snsxxiclxf*fh*txc*wxxrqcfhlkix*cylxl*nxx*xchgygqanxw*rfssxxs
skxs*ttrrs


Frame B:
---FDEEKKIIKVTXEGETVTCDKIVCDPSYFPNKVQXKGKIIRSICILNGPIPXADXKF
ESLQIIIPQKQVKRQSDMXVGVMSSAHXVCPKGKXVAIVSAXVETNEPXKELAPAYALLG
PIQXKFVXISDFIEPXADGTADNVFISKSXDATSXFETXCEXVMDMDKRIXGKDLVXXXH
PXILKQQEEA


Frame C:
---smkkrkllklhxkvkl*hviklfvihhisqikfkxkvklfvqfvf*mvqfhxlixnl
nxskslsxknklnvnqixtlvlchplixsvqrvxtlpsfqpllkpmnxxkn*xqltly*v
qfxxnlsxflislnqxlmxxptmfssqnxmmlpxxlkpxvxmswiwtseslvki*fxlxi
qxflnnkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFO611 (AFO611Q) /CSM/AF/AFO6-A/AFO611Q.Seq.d/ 938 0.0
SFJ795 (SFJ795Q) /CSM/SF/SFJ7-D/SFJ795Q.Seq.d/ 912 0.0
SFJ449 (SFJ449Q) /CSM/SF/SFJ4-C/SFJ449Q.Seq.d/ 912 0.0
SFI510 (SFI510Q) /CSM/SF/SFI5-A/SFI510Q.Seq.d/ 912 0.0
SFE141 (SFE141Q) /CSM/SF/SFE1-B/SFE141Q.Seq.d/ 912 0.0
SFD219 (SFD219Q) /CSM/SF/SFD2-A/SFD219Q.Seq.d/ 912 0.0
CHB577 (CHB577Q) /CSM/CH/CHB5-D/CHB577Q.Seq.d/ 912 0.0
CFC760 (CFC760Q) /CSM/CF/CFC7-C/CFC760Q.Seq.d/ 912 0.0
AFN874 (AFN874Q) /CSM/AF/AFN8-D/AFN874Q.Seq.d/ 912 0.0
AFI123 (AFI123Q) /CSM/AF/AFI1-A/AFI123Q.Seq.d/ 912 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BI315670|BI315670.1 saf75f12.y1 Gm-c1078 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1078-2184 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence. 56 5e-04 1
AW397479|AW397479.1 sg79d05.y1 Gm-c1007 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1007-2626 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence. 56 5e-04 1
AI437629|AI437629.1 sa37e09.y1 Gm-c1004 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1004-1505 5' similar to TR:O24653 O24653 GDI2. ;, mRNA sequence. 56 5e-04 1
BE800797|BE800797.1 sq98c12.y1 Gm-c1049 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1049-1199 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence. 56 5e-04 1
BU964562|BU964562.1 sas99a12.y1 Gm-c1036 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1036-12311 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence. 56 5e-04 1
AW306227|AW306227.1 se47g11.y1 Gm-c1017 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1017-2109 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence. 48 0.12 1
AL953846|AL953846.6 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-244D10. 38 0.18 3
CA784798|CA784798.1 sat89e06.y1 Gm-c1062 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1062-5964 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence. 44 1.9 1
BU080552|BU080552.1 saq26a11.y1 Gm-c1045 Glycine max cDNA clone SOYBEAN CLONE ID: 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence. 44 1.9 1
BI426472|BI426472.1 sag03f09.y1 Gm-c1080 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1080-257 5' similar to TR:O65744 O65744 GDP DISSOCIATION INHIBITOR. ;, mRNA sequence. 44 1.9 1
dna update 2003. 9.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EF676817_1(EF676817|pid:none) Picea sitchensis clone WS02753_I09... 167 2e-40
EF085049_1(EF085049|pid:none) Picea sitchensis clone WS0297_P09 ... 167 2e-40
BT071197_1(BT071197|pid:none) Picea sitchensis clone WS0279_A10 ... 163 3e-39
AY086920_1(AY086920|pid:none) Arabidopsis thaliana clone 29536 m... 162 6e-39
AC004005_24(AC004005|pid:none) Arabidopsis thaliana chromosome 2... 162 7e-39
AF251042_1(AF251042|pid:none) Mus musculus rab GDP dissociation ... 160 2e-38
AK316933_1(AK316933|pid:none) Arabidopsis thaliana AT2G44100 mRN... 159 4e-38
BT039998_1(BT039998|pid:none) Zea mays full-length cDNA clone ZM... 159 4e-38
AJ401079_1(AJ401079|pid:none) Lycopersicon esculentum partial mR... 159 4e-38
AM710298_1(AM710298|pid:none) Lycopersicon esculentum GDI1 gene ... 159 4e-38
protein update 2009. 4.26
PSORT

psg: 0.67 gvh: 0.46 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
20.0 %: mitochondrial
20.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for AFO611 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFO611Z
3' end seq.
>AFO611Z.Seq
----------TTTTCGATGAAGAAAAGAAAATTATTAAAGTTACATNTGAAGGTGAAACT
GTAACATGTGATAAAATTGTTTGTGATCCATCATATTTCCCAAATAAAGTTCAAAANAAA
GGTAAAATTATTCGTTCAATTTGTATTTTGAATGGTCCAATTCCATNTGCTGATAANAAA
TTTGAATCNCTCCAAATCATTATCCCNCAAAAACAAGTTAAACGTCAATCAGATATGNAC
GTTGGTGTTATGTCATCCGCTCATTGNGTCTGTCCAAAGGGTAAANACGTTGCCATCGTT
TCAGCCNCTGTTGAAACCAATGAACCANANAAAGAATTAGCNCCAGCTTACGCTTTATTA
GGTCCAATTCAANANAAATTTGTCTANATTTCTGATTTCATTGAACCAANTGCTGATGGN
ACNGCCGACAATGTTTTCATCTCAAAATCANATGATGCTACCTCNCNCTTTGAAACCNCN
TGTGAANATGTCATGGATATGGACAAGCGAATCNCTGGTAAAGATTTAGTTCNCNCTGNT
CATCCAAANATTCTTAAACAACAAGAAGAAGCT
Length of 3' end seq. 563
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -