VHM688 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHM688
Library	VH (Link to library)
Clone ID	VHM688 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U12134-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHM6-D/VHM688Q.Seq.d/
Representative seq. ID	VHM688E (Link to Original site)
Representative DNA sequence	>VHM688 (VHM688Q) /CSM/VH/VHM6-D/VHM688Q.Seq.d/ AATTAAGAAAAGTATAATACTCTACAATGAGTGAAGTTGAGGAACAAACTTTAATAAAAG ATGCATCAATGAATGAACCAACAGATAAAACCACCACTGAAGGCGATAATGGTGGTGAAA ATGAAAATGAAAATGAAAATATAGCAGAAGGTGGTGAAAATCAAGAAGATAATAATAATA ATAATGAGGGGGAGGAAGAAGAAGAGGAGGAAGAGGAAGAGGAGGAAGAAGAAGAGGAAG ATGAAGAATCAGATGACGATGATGTTGTTGTACTTTTAGATCAAGAAAGTGTTGAAGCAT CATCGAGTAAACCTGGTGCAACATTTAGAACTACACCAAATAAATTTTCATATAGAAATC CATCATCGATTACACCTGGGTCAGGTGGTAAATATATGTTAACAAAACAAACACCAACAG GTGGTGGTGGTGGTGGTAGTGGTTTCAATTCAGCTAAATCAAATCAAAAAACAATCTTTG AATTTGATATCGAATCATTTGAAGAGAAACCTTGGTTAAAACCAGGTGCTGATATTTCAG ATTATTTCAATTATAATTTCACTGAAGAAACTTGGAAAGCCTATTGTGAAAGACAAAACA CAATGAGAATGGAATTAAATAATTTAGGTAAAATTAAAGGCTATGAAAGTAATAAACCAA ATATTGGTGGTAATACCACTGGTGGTACTGGTGGTAATGGTATTGGTGATAAACCAAATA TTACCAATGGTAATTTAGGTGTTGGTGTTGGTGGTGGTATTGGTGGTGGTAGTAGCGGTA GTGGTGGTAGTATAGTTGGTGATTTACCACCAGAGTTACAAGGTGATAAATTACAACAAG GAATTCAAAGACCACAATTTAAACGACAACCAAGTAGATCTGATATTAATGATGAATCAA ATTTAGATCAACAACAACAAACTGATGGTAGATTTAATAGAGGTGGTCAACAACAAATAC CTCCTCAACAACCACAACCACAACAACAACAACAACAACCACAGCCACAACAGTATCAAA CAAATTATCAAAGAGATAGAATTTATAATCAAGATTATCGTGGTAGTGGTAGAACATATA GTACAACTAATCAATATGAGGATGATAGTAATAATAATAATAATGGTAGTGGTAGTGGTG GCGGTAGNATAGAAGAAGAAATAAAGTTCATCATCATCATCAAGAGGGATTCGATAGGGG NAAAGAGAAAAAAAAAGAAAATAAAAAAATAAAG
sequence update	2002.10.27
Translated Amino Acid sequence	lrkvYSTMSEVEEQTLIKDASMNEPTDKTTTEGDNGGENENENENIAEGGENQEDNNNN NEGEEEEEEEEEEEEEEEEDEESDDDDVVVLLDQESVEASSSKPGATFRTTPNKFSYRNP SSITPGSGGKYMLTKQTPTGGGGGGSGFNSAKSNQKTIFEFDIESFEEKPWLKPGADISD YFNYNFTEETWKAYCERQNTMRMELNNLGKIKGYESNKPNIGGNTTGGTGGNGIGDKPNI TNGNLGVGVGGGIGGGSSGSGGSIVGDLPPELQGDKLQQGIQRPQFKRQPSRSDINDESN LDQQQQTDGRFNRGGQQQIPPQQPQPQQQQQQPQPQQYQTNYQRDRIYNQDYRGSGRTYS TTNQYEDDSNNNNNGSGSGGGXIEEEIKFIIIIKRDSIGXKRKKKKIKK
Translated Amino Acid sequence (All Frames)	Frame A: nekyntlqvklrnkl*kmhqmnqqikpplkaimvvkmkmkmkiqkvvkikkiiii imrgrkkkrrkrkrrkkkrkmknqmtmmllyfikkvlkhhrvnlvqhlelhqinfhiei hhrlhlgqvvnicqnkhqqvvvvvvvvsiqlnqikkqslnlisnhlkrnlgnqvlifq iisiiislkklgkpivkdktqewniivklkamkvinqilvviplvvlvvmvlvinqi lpmvivlvlvvvlvvvvavvvvvlviyhqsykvinynkefkdhnlndnqvdlilmmnq iinnnklmvdlievvnnkyllnnhnhnnnnnnhshnsikqiikeiefiikiivvvvehi vqlinmrmiviiiimvvvvvavxkkkssssssrgirgxrekkrkknk Frame B: ikksiilynesgtnfnkrcinetnrnhhrrwwkkkkysrrwksrr* gggrrrggrgrggrrrgrrirrccctfrsrkcsiietwcninytkifiks iidytwvrwiyvnktntnrwwwwwwfqfsiksknnliyriiretlvktrcyfr lfqlfhrnlesllktkhnengikfrnrlk*tkywwyhwwywwwywtky yqwfrcwcwwwywww*rwwyswfttrvtr*ittrnskttitttkiy**ik frstttnwirwsttntssttttttttttttattvsnklskrnlsrlswwni ynsig******wwwwrxrrrnkvhhhhqegfdrgkekkkenkkik Frame C: lrkvYSTMSEVEEQTLIKDASMNEPTDKTTTEGDNGGENENENENIAEGGENQEDNNNN NEGEEEEEEEEEEEEEEEEDEESDDDDVVVLLDQESVEASSSKPGATFRTTPNKFSYRNP SSITPGSGGKYMLTKQTPTGGGGGGSGFNSAKSNQKTIFEFDIESFEEKPWLKPGADISD YFNYNFTEETWKAYCERQNTMRMELNNLGKIKGYESNKPNIGGNTTGGTGGNGIGDKPNI TNGNLGVGVGGGIGGGSSGSGGSIVGDLPPELQGDKLQQGIQRPQFKRQPSRSDINDESN LDQQQQTDGRFNRGGQQQIPPQQPQPQQQQQQPQPQQYQTNYQRDRIYNQDYRGSGRTYS TTNQYEDDSNNNNNGSGSGGGXIEEEIKFIIIIKRDSIGXKRKKKKIKK
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHM688 (VHM688Q) /CSM/VH/VHM6-D/VHM688Q.Seq.d/ 579 e-164 SLB839 (SLB839Q) /CSM/SL/SLB8-B/SLB839Q.Seq.d/ 579 e-164 FC-IC1139 (FC-IC1139Q) /CSM/FC-IC/FC-IC1139Q.Seq.d/ 343 4e-93 AFC157 (AFC157Q) /CSM/AF/AFC1-C/AFC157Q.Seq.d/ 343 4e-93 AFB235 (AFB235Q) /CSM/AF/AFB2-B/AFB235Q.Seq.d/ 339 6e-92 VHM275 (VHM275Q) /CSM/VH/VHM2-D/VHM275Q.Seq.d/ 50 8e-05 AHO771 (AHO771Q) /CSM/AH/AHO7-C/AHO771Q.Seq.d/ 50 8e-05 AHE372 (AHE372Q) /CSM/AH/AHE3-C/AHE372Q.Seq.d/ 50 8e-05 AFK777 (AFK777Q) /CSM/AF/AFK7-D/AFK777Q.Seq.d/ 50 8e-05 AFH146 (AFH146Q) /CSM/AF/AFH1-B/AFH146Q.Seq.d/ 50 8e-05
own update	2003. 1. 3
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (AU060875) Dictyostelium discoideum slug cDNA, clone SLB839. 563 0.0 3 (BJ444621) Dictyostelium discoideum cDNA clone:ddv56o22, 3' ... 424 0.0 3 (BJ425822) Dictyostelium discoideum cDNA clone:ddv56o22, 5' ... 361 0.0 3 (BJ325990) Dictyostelium discoideum cDNA clone:dda3e10, 5' e... 339 0.0 3 (BJ324253) Dictyostelium discoideum cDNA clone:dda5a15, 5' e... 339 0.0 3 (BJ341162) Dictyostelium discoideum cDNA clone:dda5a15, 3' e... 289 e-177 5 (AU272170) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 289 e-120 3 (AU272171) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 289 e-115 3 (DT614656) ACAH-aaa29d09.g1 Hydra_EST_UCI-10 Hydra magnipapi... 86 4e-12 1 (DT609793) ACAG-aaa76c03.g1 Hydra_EST_UCI-9 Hydra magnipapil... 86 4e-12 1
dna update	2008.12. 2
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value EF173373_6(EF173373\|pid:none) Aedes aegypti clone BAC ND41B18, c... 86 3e-15 (Q5XJD3) RecName: Full=Pre-mRNA 3'-end-processing factor FIP1; A... 84 8e-15 BC152155_1(BC152155\|pid:none) Danio rerio zgc:103421, mRNA (cDNA... 84 8e-15 CR760290_1(CR760290\|pid:none) Xenopus tropicalis finished cDNA, ... 83 2e-14 BC124845_1(BC124845\|pid:none) Xenopus laevis hypothetical LOC494... 83 2e-14 BC135820_1(BC135820\|pid:none) Xenopus tropicalis FIP1 like 1 (S.... 83 2e-14 BC082895_1(BC082895\|pid:none) Xenopus laevis hypothetical LOC494... 83 2e-14 AJ720050_1(AJ720050\|pid:none) Gallus gallus mRNA for hypothetica... 82 5e-14 AY229892_1(AY229892\|pid:none) Homo sapiens FIP1L1/PDGFRA fusion ... 81 7e-14 BC024016_1(BC024016\|pid:none) Homo sapiens FIP1 like 1 (S. cerev... 81 7e-14
protein update	2009. 7.17
PSORT	psg: 0.75 gvh: 0.10 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00 nuc: 0.12 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 68.0 %: nuclear 28.0 %: cytoplasmic 4.0 %: peroxisomal >> prediction for VHM688 is nuc
5' end seq. ID	VHM688F
5' end seq.	>VHM688F.Seq AATTAAGAAAAGTATAATACTCTACAATGAGTGAAGTTGAGGAACAAACTTTAATAAAAG ATGCATCAATGAATGAACCAACAGATAAAACCACCACTGAAGGCGATAATGGTGGTGAAA ATGAAAATGAAAATGAAAATATAGCAGAAGGTGGTGAAAATCAAGAAGATAATAATAATA ATAATGAGGGGGAGGAAGAAGAAGAGGAGGAAGAGGAAGAGGAGGAAGAAGAAGAGGAAG ATGAAGAATCAGATGACGATGATGTTGTTGTACTTTTAGATCAAGAAAGTGTTGAAGCAT CATCGAGTAAACCTGGTGCAACATTTAGAACTACACCAAATAAATTTTCATATAGAAATC CATCATCGATTACACCTGGGTCAGGTGGTAAATATATGTTAACAAAACAAACACCAACAG GTGGTGGTGGTGGTGGTAGTGGTTTCAATTCAGCTAAATCAAATCAAAAAACAATCTTTG AATTTGATATCGAATCATTTGAAGAGAAACCTTGGTTAAAACCAGGTGCTGATATTTCAG ATTATTTCAATTATAATTTCACTGAAGAAACTTGGAAAGCCTATTGTGAAAGACAAAACA CAATGAGAATGGAATTAAATAATTTNNNNNNNNNN
Length of 5' end seq.	635
3' end seq. ID	VHM688Z
3' end seq.	>VHM688Z.Seq NNNNNNNNNNGGTTAAAACCAGGTGCTGATATTTCAGATTATTTCAATTATAATTTCACT GAAGAAACTTGGAAAGCCTATTGTGAAAGACAAAACACAATGAGAATGGAATTAAATAAT TTAGGTAAAATTAAAGGCTATGAAAGTAATAAACCAAATATTGGTGGTAATACCACTGGT GGTACTGGTGGTAATGGTATTGGTGATAAACCAAATATTACCAATGGTAATTTAGGTGTT GGTGTTGGTGGTGGTATTGGTGGTGGTAGTAGCGGTAGTGGTGGTAGTATAGTTGGTGAT TTACCACCAGAGTTACAAGGTGATAAATTACAACAAGGAATTCAAAGACCACAATTTAAA CGACAACCAAGTAGATCTGATATTAATGATGAATCAAATTTAGATCAACAACAACAAACT GATGGTAGATTTAATAGAGGTGGTCAACAACAAATACCTCCTCAACAACCACAACCACAA CAACAACAACAACAACCACAGCCACAACAGTATCAAACAAATTATCAAAGAGATAGAATT TATAATCAAGATTATCGTGGTAGTGGTAGAACATATAGTACAACTAATCAATATGAGGAT GATAGTAATAATAATAATAATGGTAGTGGTAGTGGTGGCGGTAGNATAGAAGAAGAAATA AAGTTCATCATCATCATCAAGAGGGATTCGATAGGGGNAAAGAGAAAAAAAAAGAAAATA AAAAAATAAAG
Length of 3' end seq.	731
Connected seq. ID	VHM688P
Connected seq.	>VHM688P.Seq AATTAAGAAAAGTATAATACTCTACAATGAGTGAAGTTGAGGAACAAACTTTAATAAAAG ATGCATCAATGAATGAACCAACAGATAAAACCACCACTGAAGGCGATAATGGTGGTGAAA ATGAAAATGAAAATGAAAATATAGCAGAAGGTGGTGAAAATCAAGAAGATAATAATAATA ATAATGAGGGGGAGGAAGAAGAAGAGGAGGAAGAGGAAGAGGAGGAAGAAGAAGAGGAAG ATGAAGAATCAGATGACGATGATGTTGTTGTACTTTTAGATCAAGAAAGTGTTGAAGCAT CATCGAGTAAACCTGGTGCAACATTTAGAACTACACCAAATAAATTTTCATATAGAAATC CATCATCGATTACACCTGGGTCAGGTGGTAAATATATGTTAACAAAACAAACACCAACAG GTGGTGGTGGTGGTGGTAGTGGTTTCAATTCAGCTAAATCAAATCAAAAAACAATCTTTG AATTTGATATCGAATCATTTGAAGAGAAACCTTGGTTAAAACCAGGTGCTGATATTTCAG ATTATTTCAATTATAATTTCACTGAAGAAACTTGGAAAGCCTATTGTGAAAGACAAAACA CAATGAGAATGGAATTAAATAATTT----------GGTTAAAACCAGGTGCTGATATTTC AGATTATTTCAATTATAATTTCACTGAAGAAACTTGGAAAGCCTATTGTGAAAGACAAAA CACAATGAGAATGGAATTAAATAATTTAGGTAAAATTAAAGGCTATGAAAGTAATAAACC AAATATTGGTGGTAATACCACTGGTGGTACTGGTGGTAATGGTATTGGTGATAAACCAAA TATTACCAATGGTAATTTAGGTGTTGGTGTTGGTGGTGGTATTGGTGGTGGTAGTAGCGG TAGTGGTGGTAGTATAGTTGGTGATTTACCACCAGAGTTACAAGGTGATAAATTACAACA AGGAATTCAAAGACCACAATTTAAACGACAACCAAGTAGATCTGATATTAATGATGAATC AAATTTAGATCAACAACAACAAACTGATGGTAGATTTAATAGAGGTGGTCAACAACAAAT ACCTCCTCAACAACCACAACCACAACAACAACAACAACAACCACAGCCACAACAGTATCA AACAAATTATCAAAGAGATAGAATTTATAATCAAGATTATCGTGGTAGTGGTAGAACATA TAGTACAACTAATCAATATGAGGATGATAGTAATAATAATAATAATGGTAGTGGTAGTGG TGGCGGTAGNATAGAAGAAGAAATAAAGTTCATCATCATCATCAAGAGGGATTCGATAGG GGNAAAGAGAAAAAAAAAGAAAATAAAAAAATAAAG
Length of connected seq.	1346
Full length Seq ID	VHM688E
Full length Seq.	>VHM688E.Seq AATTAAGAAAAGTATAATACTCTACAATGAGTGAAGTTGAGGAACAAACTTTAATAAAAG ATGCATCAATGAATGAACCAACAGATAAAACCACCACTGAAGGCGATAATGGTGGTGAAA ATGAAAATGAAAATGAAAATATAGCAGAAGGTGGTGAAAATCAAGAAGATAATAATAATA ATAATGAGGGGGAGGAAGAAGAAGAGGAGGAAGAGGAAGAGGAGGAAGAAGAAGAGGAAG ATGAAGAATCAGATGACGATGATGTTGTTGTACTTTTAGATCAAGAAAGTGTTGAAGCAT CATCGAGTAAACCTGGTGCAACATTTAGAACTACACCAAATAAATTTTCATATAGAAATC CATCATCGATTACACCTGGGTCAGGTGGTAAATATATGTTAACAAAACAAACACCAACAG GTGGTGGTGGTGGTGGTAGTGGTTTCAATTCAGCTAAATCAAATCAAAAAACAATCTTTG AATTTGATATCGAATCATTTGAAGAGAAACCTTGGTTAAAACCAGGTGCTGATATTTCAG ATTATTTCAATTATAATTTCACTGAAGAAACTTGGAAAGCCTATTGTGAAAGACAAAACA CAATGAGAATGGAATTAAATAATTTAGGTAAAATTAAAGGCTATGAAAGTAATAAACCAA ATATTGGTGGTAATACCACTGGTGGTACTGGTGGTAATGGTATTGGTGATAAACCAAATA TTACCAATGGTAATTTAGGTGTTGGTGTTGGTGGTGGTATTGGTGGTGGTAGTAGCGGTA GTGGTGGTAGTATAGTTGGTGATTTACCACCAGAGTTACAAGGTGATAAATTACAACAAG GAATTCAAAGACCACAATTTAAACGACAACCAAGTAGATCTGATATTAATGATGAATCAA ATTTAGATCAACAACAACAAACTGATGGTAGATTTAATAGAGGTGGTCAACAACAAATAC CTCCTCAACAACCACAACCACAACAACAACAACAACAACCACAGCCACAACAGTATCAAA CAAATTATCAAAGAGATAGAATTTATAATCAAGATTATCGTGGTAGTGGTAGAACATATA GTACAACTAATCAATATGAGGATGATAGTAATAATAATAATAATGGTAGTGGTAGTGGTG GCGGTAGNATAGAAGAAGAAATAAAGTTCATCATCATCATCAAGAGGGATTCGATAGGGG NAAAGAGAAAAAAAAAGAAAATAAAAAAATAAAG
Length of full length seq.	1234

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas