VHM682
Library VH
(Link to library)
Clone ID VHM682
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16390-1
Original site URL
Representative seq. ID VHM682P
(Link to Original site)
Representative DNA sequence
>VHM682 (VHM682Q) /CSM/VH/VHM6-D/VHM682Q.Seq.d/
AATTAATTAAATAAAAGAAAAAGAAAATGAGATTATTATTATTATTAATTTTAATAATAA
CAATTAATTTTAGTTATGGTGTATTAACACCTAAAAATTTAGCAGGTGAAGCGAGTGAAT
TTGGTTCATTTAATATTCCAAATCCAATGGATGTAGCACAAAGTAGTGATAGTTCATTAT
TTGGTATTTCAATGACACAAAGCCAATTGAAAAATTCATTTGAATGGTCAGGAGTTGTAC
CAGTTGATTCAGAAGAAGAATTTACATTAACATTCTTTTCAAGTTTTCCATTAAGTGAAT
TTAAAGTTGAAGCATCACCAAAAACTTCATTATCATCTTCCAAATCAGAATCAGAACATA
AATCAAAATTCTATAAGGTGATTAAATCAATATATCAAACACCAACCGTTACCAATGGTT
CATTTGGTATTGATGGTGCAACAACTCCATCATTTAGTTTAACATGGGATAAACCAGTTG
TTGGAGATTGGAATGTTGTAATCACAGCCTCATCATCATTAAGAAAGAATGAAAAATTCC
AAAAGATGGTAGAAGATTCAACACCTCAATTGTTAATGTTGGTTCAAAATCCAAGTGATA
CTCATATCTACTCTTATGTATCATCATACAATAATTTATTCACAXXXXXXXXXXGAGAGA
TGGTAAAATGCCAAAAGAATTGGCTGATCGTATTGGTAAATCAACTGGTAATGGTAAATT
AATTCTTACACATGGTTATTGTAGTGAAGGTGTTTGGCCAATTGAGGATTTTGAAAATTC
TGTAGAGTTCCAAGATTTTAATCAAAATCGTGGTAATGATGAATTTGCTCAAATACTTGC
CAATTTCGGTAGCCAATATACCGATGGTTTTTCACTTGTTGCTCATAGTCAAGGTGGTAA
CGCTGCTCTTCACCTCGTAACATTCTATTTCAGTGGACTTGATCTTTCTCAAAAACTTGA
AGGTCGTGTCATTCAATCAATGGGTACTCCATACCAAGGTACTGCTCTCGCTGGTACTTG
GGCTTCTATTGGTAGTGCTGTAGGTGTTGGTTGTTCTGCAAATGATGATCTCACTGTTGA
TGGTGCCGCTTTATGGTTAAAATCAATTCCAGCAGATAAAAGAGCTTTAGTTTATTATAC
AACTACTCAATATAGTACTGGTTCTTTAATTAATTATTGTAATTTGGCTTCCAATGCAGT
CTTAGAATGGCCAAATGATGGTGTTGTTGATAATGAGCATACTCCACTCGAAGGTGGTGT
ATATTTAAATAACTTTAAAGACTGGTGTCACTCTGATGGTATGCACTCACCACAACAAAC
TACAAATACTGAATATAACAAAGAAATGAGTTCCAACTCTGTTGGTAACACTTTGTATAT
TTTTTTTTCTCTACAAAATGAAAAAATCGATT
sequence update 2002.10.25
Translated Amino Acid sequence
lik*KKKKMRLLLLLILIITINFSYGVLTPKNLAGEASEFGSFNIPNPMDVAQSSDSSLF
GISMTQSQLKNSFEWSGVVPVDSEEEFTLTFFSSFPLSEFKVEASPKTSLSSSKSESEHK
SKFYKVIKSIYQTPTVTNGSFGIDGATTPSFSLTWDKPVVGDWNVVITASSSLRKNEKFQ
KMVEDSTPQLLMLVQNPSDTHIYSYVSSYNNLFT---

---RDGKMPKELADRIGKSTGNGKLILTHGYCSEGVWPIEDFENSVEFQDFNQNRGNDEF
AQILANFGSQYTDGFSLVAHSQGGNAALHLVTFYFSGLDLSQKLEGRVIQSMGTPYQGTA
LAGTWASIGSAVGVGCSANDDLTVDGAALWLKSIPADKRALVYYTTTQYSTGSLINYCNL
ASNAVLEWPNDGVVDNEHTPLEGGVYLNNFKDWCHSDGMHSPQQTTNTEYNKEMSSNSVG
NTLYIFFSLQNEKID


Translated Amino Acid sequence (All Frames)
Frame A:
n*lnkrkrk*dyyyy*f***qlilvmvy*hlki*qvkrvnlvhlifqiqwm*hkvvivhy
lvfq*hkan*kihlngqelyqliqkknlh*hsfqvfh*vnlklkhhqklhyhlpnqnqni
nqnsir*lnqyikhqplpmvhlvlmvqqlhhlv*hginqlleigml*sqphhh*ermkns
krw*kiqhlnc*cwfkiqvilistlmyhhtiiys---

---erw*nakrig*syw*inw*w*insytwll**rclan*gf*kfcrvprf*sksw***i
csntcqfr*piyrwfftccs*srw*rcssprnilfqwt*sfskt*rschsingysipryc
srwylgfyw*ccrcwlfck**shc*wcrfmvkinssr*ksfsllynysi*ywffn*ll*f
gfqcslrmak*wcc***aystrrwcifk*l*rlvsl*wyaltttnyky*i*qrnefqlcw
*hfvyfffstk*knr

Frame B:
in*ikekeneiiiiinfnnnn*f*lwcint*kfsr*se*iwfi*ysksngcstk***fii
wyfndtkpiekfi*mvrscts*frrriyinilfkfsik*i*s*sitknfiiifqirirt*
ikil*gd*inisntnryqwfiwy*wcnnsii*fnmg*tscwrleccnhsliiikke*kip
kdgrrfntsivnvgsksk*ysylllciiiq*fih---

---RDGKMPKELADRIGKSTGNGKLILTHGYCSEGVWPIEDFENSVEFQDFNQNRGNDEF
AQILANFGSQYTDGFSLVAHSQGGNAALHLVTFYFSGLDLSQKLEGRVIQSMGTPYQGTA
LAGTWASIGSAVGVGCSANDDLTVDGAALWLKSIPADKRALVYYTTTQYSTGSLINYCNL
ASNAVLEWPNDGVVDNEHTPLEGGVYLNNFKDWCHSDGMHSPQQTTNTEYNKEMSSNSVG
NTLYIFFSLQNEKID

Frame C:
lik*KKKKMRLLLLLILIITINFSYGVLTPKNLAGEASEFGSFNIPNPMDVAQSSDSSLF
GISMTQSQLKNSFEWSGVVPVDSEEEFTLTFFSSFPLSEFKVEASPKTSLSSSKSESEHK
SKFYKVIKSIYQTPTVTNGSFGIDGATTPSFSLTWDKPVVGDWNVVITASSSLRKNEKFQ
KMVEDSTPQLLMLVQNPSDTHIYSYVSSYNNLFT---

---emvkcqknwlivlvnqlvmvn*flhmvivvkvfgqlrilkil*sskilikivvmmnl
lkylpisvanipmvfhlllivkvvtllfts*hsisvdliflknlkvvsfnqwvlhtkvll
slvlglllvvl*vlvvlqmmisllmvplyg*nqfqqikel*fiiqllnivlvl*liiviw
lpmqs*ngqmmvllimsilhskvvyi*itlktgvtlmvcthhnklqilnitkk*vptllv
tlciffflykmkksi

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHM682 (VHM682Q) /CSM/VH/VHM6-D/VHM682Q.Seq.d/ 2514 0.0
VHQ437 (VHQ437Q) /CSM/VH/VHQ4-B/VHQ437Q.Seq.d/ 1405 0.0
VHO841 (VHO841Q) /CSM/VH/VHO8-B/VHO841Q.Seq.d/ 1405 0.0
VHO642 (VHO642Q) /CSM/VH/VHO6-B/VHO642Q.Seq.d/ 1405 0.0
VHN543 (VHN543Q) /CSM/VH/VHN5-B/VHN543Q.Seq.d/ 1405 0.0
VHK822 (VHK822Q) /CSM/VH/VHK8-A/VHK822Q.Seq.d/ 1405 0.0
VHJ614 (VHJ614Q) /CSM/VH/VHJ6-A/VHJ614Q.Seq.d/ 1405 0.0
VHI408 (VHI408Q) /CSM/VH/VHI4-A/VHI408Q.Seq.d/ 1405 0.0
VHI164 (VHI164Q) /CSM/VH/VHI1-C/VHI164Q.Seq.d/ 1405 0.0
VHH813 (VHH813Q) /CSM/VH/VHH8-A/VHH813Q.Seq.d/ 1405 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ444561) Dictyostelium discoideum cDNA clone:ddv56c22, 3' ... 1435 0.0 2
(BJ446642) Dictyostelium discoideum cDNA clone:ddv63j10, 3' ... 1403 0.0 1
(BJ445677) Dictyostelium discoideum cDNA clone:ddv60c12, 3' ... 1403 0.0 1
(BJ445671) Dictyostelium discoideum cDNA clone:ddv60b12, 3' ... 1403 0.0 1
(BJ445054) Dictyostelium discoideum cDNA clone:ddv58e11, 3' ... 1403 0.0 1
(BJ443186) Dictyostelium discoideum cDNA clone:ddv52l06, 3' ... 1403 0.0 1
(BJ442520) Dictyostelium discoideum cDNA clone:ddv50k04, 3' ... 1403 0.0 1
(BJ441741) Dictyostelium discoideum cDNA clone:ddv47o15, 3' ... 1403 0.0 1
(BJ441595) Dictyostelium discoideum cDNA clone:ddv47p02, 3' ... 1403 0.0 1
(BJ441441) Dictyostelium discoideum cDNA clone:ddv46p15, 3' ... 1403 0.0 1
dna update 2008.12. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM920689_339(AM920689|pid:none) Xanthomonas campestris pv. campe... 215 3e-54
CP000050_316(CP000050|pid:none) Xanthomonas campestris pv. campe... 213 1e-53
AE008922_313(AE008922|pid:none) Xanthomonas campestris pv. campe... 213 1e-53
AM039952_339(AM039952|pid:none) Xanthomonas campestris pv. vesic... 213 2e-53
AB302139_1(AB302139|pid:none) Uncultured bacterium plaM8 gene fo... 38 1.0
AB302138_1(AB302138|pid:none) Uncultured bacterium plaM7 gene fo... 38 1.0
CP001034_767(CP001034|pid:none) Natranaerobius thermophilus JW/N... 37 2.3
AL132904_13(AL132904|pid:none) Caenorhabditis elegans YAC Y111B2... 35 5.1
AF440781_31(AF440781|pid:none) Streptomyces cinnamonensis polyet... 35 6.6
AM270302_47(AM270302|pid:none) Aspergillus niger contig An13c008... 35 6.6
protein update 2009. 7.17
PSORT

psg: 1.00 gvh: 0.65 alm: 0.40 top: 0.07 tms: 0.00 mit: 0.33 mip: 0.02
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: extracellular, including cell wall
28.0 %: cytoplasmic
12.0 %: vacuolar
12.0 %: endoplasmic reticulum
8.0 %: nuclear
4.0 %: vesicles of secretory system

>> prediction for VHM682 is exc

5' end seq. ID VHM682F
5' end seq.
>VHM682F.Seq
AATTAATTAAATAAAAGAAAAAGAAAATGAGATTATTATTATTATTAATTTTAATAATAA
CAATTAATTTTAGTTATGGTGTATTAACACCTAAAAATTTAGCAGGTGAAGCGAGTGAAT
TTGGTTCATTTAATATTCCAAATCCAATGGATGTAGCACAAAGTAGTGATAGTTCATTAT
TTGGTATTTCAATGACACAAAGCCAATTGAAAAATTCATTTGAATGGTCAGGAGTTGTAC
CAGTTGATTCAGAAGAAGAATTTACATTAACATTCTTTTCAAGTTTTCCATTAAGTGAAT
TTAAAGTTGAAGCATCACCAAAAACTTCATTATCATCTTCCAAATCAGAATCAGAACATA
AATCAAAATTCTATAAGGTGATTAAATCAATATATCAAACACCAACCGTTACCAATGGTT
CATTTGGTATTGATGGTGCAACAACTCCATCATTTAGTTTAACATGGGATAAACCAGTTG
TTGGAGATTGGAATGTTGTAATCACAGCCTCATCATCATTAAGAAAGAATGAAAAATTCC
AAAAGATGGTAGAAGATTCAACACCTCAATTGTTAATGTTGGTTCAAAATCCAAGTGATA
CTCATATCTACTCTTATGTATCATCATACAATAATTTATTCACANNNNNNNNNN
Length of 5' end seq. 654
3' end seq. ID VHM682Z
3' end seq.
>VHM682Z.Seq
NNNNNNNNNNGAGAGATGGTAAAATGCCAAAAGAATTGGCTGATCGTATTGGTAAATCAA
CTGGTAATGGTAAATTAATTCTTACACATGGTTATTGTAGTGAAGGTGTTTGGCCAATTG
AGGATTTTGAAAATTCTGTAGAGTTCCAAGATTTTAATCAAAATCGTGGTAATGATGAAT
TTGCTCAAATACTTGCCAATTTCGGTAGCCAATATACCGATGGTTTTTCACTTGTTGCTC
ATAGTCAAGGTGGTAACGCTGCTCTTCACCTCGTAACATTCTATTTCAGTGGACTTGATC
TTTCTCAAAAACTTGAAGGTCGTGTCATTCAATCAATGGGTACTCCATACCAAGGTACTG
CTCTCGCTGGTACTTGGGCTTCTATTGGTAGTGCTGTAGGTGTTGGTTGTTCTGCAAATG
ATGATCTCACTGTTGATGGTGCCGCTTTATGGTTAAAATCAATTCCAGCAGATAAAAGAG
CTTTAGTTTATTATACAACTACTCAATATAGTACTGGTTCTTTAATTAATTATTGTAATT
TGGCTTCCAATGCAGTCTTAGAATGGCCAAATGATGGTGTTGTTGATAATGAGCATACTC
CACTCGAAGGTGGTGTATATTTAAATAACTTTAAAGACTGGTGTCACTCTGATGGTATGC
ACTCACCACAACAAACTACAAATACTGAATATAACAAAGAAATGAGTTCCAACTCTGTTG
GTAACACTTTGTATATTTTTTTTTCTCTACAAAATGAAAAAATCGATT
Length of 3' end seq. 768
Connected seq. ID VHM682P
Connected seq.
>VHM682P.Seq
AATTAATTAAATAAAAGAAAAAGAAAATGAGATTATTATTATTATTAATTTTAATAATAA
CAATTAATTTTAGTTATGGTGTATTAACACCTAAAAATTTAGCAGGTGAAGCGAGTGAAT
TTGGTTCATTTAATATTCCAAATCCAATGGATGTAGCACAAAGTAGTGATAGTTCATTAT
TTGGTATTTCAATGACACAAAGCCAATTGAAAAATTCATTTGAATGGTCAGGAGTTGTAC
CAGTTGATTCAGAAGAAGAATTTACATTAACATTCTTTTCAAGTTTTCCATTAAGTGAAT
TTAAAGTTGAAGCATCACCAAAAACTTCATTATCATCTTCCAAATCAGAATCAGAACATA
AATCAAAATTCTATAAGGTGATTAAATCAATATATCAAACACCAACCGTTACCAATGGTT
CATTTGGTATTGATGGTGCAACAACTCCATCATTTAGTTTAACATGGGATAAACCAGTTG
TTGGAGATTGGAATGTTGTAATCACAGCCTCATCATCATTAAGAAAGAATGAAAAATTCC
AAAAGATGGTAGAAGATTCAACACCTCAATTGTTAATGTTGGTTCAAAATCCAAGTGATA
CTCATATCTACTCTTATGTATCATCATACAATAATTTATTCACA----------GAGAGA
TGGTAAAATGCCAAAAGAATTGGCTGATCGTATTGGTAAATCAACTGGTAATGGTAAATT
AATTCTTACACATGGTTATTGTAGTGAAGGTGTTTGGCCAATTGAGGATTTTGAAAATTC
TGTAGAGTTCCAAGATTTTAATCAAAATCGTGGTAATGATGAATTTGCTCAAATACTTGC
CAATTTCGGTAGCCAATATACCGATGGTTTTTCACTTGTTGCTCATAGTCAAGGTGGTAA
CGCTGCTCTTCACCTCGTAACATTCTATTTCAGTGGACTTGATCTTTCTCAAAAACTTGA
AGGTCGTGTCATTCAATCAATGGGTACTCCATACCAAGGTACTGCTCTCGCTGGTACTTG
GGCTTCTATTGGTAGTGCTGTAGGTGTTGGTTGTTCTGCAAATGATGATCTCACTGTTGA
TGGTGCCGCTTTATGGTTAAAATCAATTCCAGCAGATAAAAGAGCTTTAGTTTATTATAC
AACTACTCAATATAGTACTGGTTCTTTAATTAATTATTGTAATTTGGCTTCCAATGCAGT
CTTAGAATGGCCAAATGATGGTGTTGTTGATAATGAGCATACTCCACTCGAAGGTGGTGT
ATATTTAAATAACTTTAAAGACTGGTGTCACTCTGATGGTATGCACTCACCACAACAAAC
TACAAATACTGAATATAACAAAGAAATGAGTTCCAACTCTGTTGGTAACACTTTGTATAT
TTTTTTTTCTCTACAAAATGAAAAAATCGATT
Length of connected seq. 1402
Full length Seq ID -
Full length Seq. -
Length of full length seq. -