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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHM633
Library VH
(Link to library)
Clone ID VHM633
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11087-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHM633 (VHM633Q) /CSM/VH/VHM6-B/VHM633Q.Seq.d/
XXXXXXXXXXTCTTTTTGGTTCAACTGCACCACCACAAACCAGTTCTTTCGGATTTGGAG
GATTCAGTAGTGCTCCAGTTTCAGCAACACCATCAGCAGCACCATCATTATTTGGTAGAT
TAGTTAGTGCTCCAGTTTCAGCAACACCATCAGCAGTACCAACTGCCACTTCACAATTCG
GTGGAACAACAAGTTTTAATAAAATTGAAACTCCAACTGGTACCCCTACCTCTTTTTCAT
TTGGTGCTTCCACAACACCAAGTTCCTCAGGATTTGGGGGATTCGGTAGTGCTCCAGTCT
CAACAACACCATCATTTGGTGCTATCCCTTCTTCCCCAGTTGAAAAAACAACAGCAACAA
CAACAACAACAGCAACTCCTCATTCAAATACAGAATCATCACTATTTGGAAGCACACAAG
CCAATATCACTTCATTGTTTGGTGGCTCGTCTACTCCACAACCATCCACATTCTCATTTT
CAACACCACAATCAAAATTTNAAAATAATGATACCACNGATTATACTCCAACACCAACTG
ATAATATTACTCTACTTCAATTTCAGCAATGCCACAATTCTCAAATAAATCTGTNAAGAA
ATCAAACAGAACAAACAAAAAAATAATTGNAATCCAATAATAATAAAGATAAGAT
sequence update 2002. 9.10
Translated Amino Acid sequence 
---LFGSTAPPQTSSFGFGGFSSAPVSATPSAAPSLFGRLVSAPVSATPSAVPTATSQFG
GTTSFNKIETPTGTPTSFSFGASTTPSSSGFGGFGSAPVSTTPSFGAIPSSPVEKTTATT
TTTATPHSNTESSLFGSTQANITSLFGGSSTPQPSTFSFSTPQSKFXNNDTTDYTPTPTD
NITLLQFQQCHNSQINLXRNQTEQTKK*lxsnnnkdk
Translated Amino Acid sequence (All Frames) 
Frame A:
---LFGSTAPPQTSSFGFGGFSSAPVSATPSAAPSLFGRLVSAPVSATPSAVPTATSQFG
GTTSFNKIETPTGTPTSFSFGASTTPSSSGFGGFGSAPVSTTPSFGAIPSSPVEKTTATT
TTTATPHSNTESSLFGSTQANITSLFGGSSTPQPSTFSFSTPQSKFXNNDTTDYTPTPTD
NITLLQFQQCHNSQINLXRNQTEQTKK*lxsnnnkdk


Frame B:
---flvqlhhhkpvlsdledsvvlqfqqhhqqhhhylvd*lvlqfqqhhqqyqlplhnsv
eqqvliklklqlvplplfhlvlpqhqvpqdlgdsvvlqsqqhhhlvlsllpqlkkqqqqq
qqqqlliqiqnhhyleahkpislhclvarllhnhphshfqhhnqnxkimipxiilqhqli
illyfnfsnatilk*icxeikqnkqknnxnpiiikir


Frame C:
---fwfnctttnqffriwriq*cssfsntisstiiiw*is*cssfsntisstnchftirw
nnkf**n*nsnwypylffiwcfhntkflriwgir*csslnntiiwcypffps*knnsnnn
nnsnssfkyriitiwkhtsqyhfivwwlvysttihilifnttikixk**yhxlysntn**
yystsisampqfsnksvkksnrtnkkiixiq***r*d
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ347 (VHQ347Q) /CSM/VH/VHQ3-B/VHQ347Q.Seq.d/                        666   0.0
VHP347 (VHP347Q) /CSM/VH/VHP3-B/VHP347Q.Seq.d/                        666   0.0
VHP189 (VHP189Q) /CSM/VH/VHP1-D/VHP189Q.Seq.d/                        666   0.0
VHO875 (VHO875Q) /CSM/VH/VHO8-D/VHO875Q.Seq.d/                        666   0.0
VHO647 (VHO647Q) /CSM/VH/VHO6-B/VHO647Q.Seq.d/                        666   0.0
VHM633 (VHM633Q) /CSM/VH/VHM6-B/VHM633Q.Seq.d/                        666   0.0
VHD645 (VHD645Q) /CSM/VH/VHD6-B/VHD645Q.Seq.d/                        666   0.0
VHC529 (VHC529Q) /CSM/VH/VHC5-B/VHC529Q.Seq.d/                        666   0.0
VHA584 (VHA584Q) /CSM/VH/VHA5-D/VHA584Q.Seq.d/                        666   0.0
VFL112 (VFL112Q) /CSM/VF/VFL1-A/VFL112Q.Seq.d/                        666   0.0
own update 2003. 1. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.   666   0.0    8
AF017777|AF017777.1 Drosophila melanogaster tweety (tty), flightless (fli), dodo (dod), penguin (pen), small optic lobes (sol), innocent bystander (iby), waclaw (waw), bobby sox (bbx), sluggish (slg), helicase (hlc), misato (mst), and la costa (lcs) genes, complete cds.    44   1e-05  2
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   6e-05  13
AE003568|AE003568.3 Drosophila melanogaster chromosome X section 71 of 74 of the complete sequence.    36   0.002  2
AC011251|AC011251.5 Drosophila melanogaster, chromosome X, region 19F-20A, BAC clone BACR09F10, complete sequence.    36   0.002  2
AC013978|AC013978.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    36   0.002  2
CQ574214|CQ574214.1 Sequence 1972 from Patent WO0171042.           36   0.002  2
AF184227|AF184227.1 Drosophila melanogaster clone LD23194 tty (tty) mRNA, complete cds.    36   0.002  2
CQ574215|CQ574215.1 Sequence 1973 from Patent WO0171042.           36   0.002  2
BT009092|BT009092.1 Triticum aestivum clone wkm2c.pk005.b12:fis, full insert mRNA sequence.    40   0.031  2
dna update 2004. 3.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116963_44(AC116963|pid:none) Dictyostelium discoideum chromoso...   149   5e-37
CU928173_450(CU928173|pid:none) Zygosaccharomyces rouxii strain ...    35   1.9
EF598049_1(EF598049|pid:none) Arabidopsis thaliana ecotype CS671...    35   2.5
EF598042_1(EF598042|pid:none) Arabidopsis thaliana ecotype CS901...    35   2.5
EF598054_1(EF598054|pid:none) Arabidopsis thaliana ecotype CS679...    34   3.3
AY814858_1(AY814858|pid:none) Schistosoma japonicum SJCHGC05983 ...    34   3.3
AF206618_1(AF206618|pid:none) Gorilla gorilla carboxyl-ester lip...    34   4.3
AX069367_1(AX069367|pid:none) Sequence 31 from Patent WO0102600....    33   5.6
CS180414_1(CS180414|pid:none) Sequence 8 from Patent WO2005095594.     33   5.6
(P19835) RecName: Full=Bile salt-activated lipase;          Shor...    33   5.6
protein update 2009. 7.17
PSORT 

 psg: 0.91  gvh: 0.64  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.41  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 16.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: extracellular, including cell wall
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: endoplasmic reticulum

>> prediction for VHM633 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHM633Z
3' end seq. 
>VHM633Z.Seq
NNNNNNNNNNTCTTTTTGGTTCAACTGCACCACCACAAACCAGTTCTTTCGGATTTGGAG
GATTCAGTAGTGCTCCAGTTTCAGCAACACCATCAGCAGCACCATCATTATTTGGTAGAT
TAGTTAGTGCTCCAGTTTCAGCAACACCATCAGCAGTACCAACTGCCACTTCACAATTCG
GTGGAACAACAAGTTTTAATAAAATTGAAACTCCAACTGGTACCCCTACCTCTTTTTCAT
TTGGTGCTTCCACAACACCAAGTTCCTCAGGATTTGGGGGATTCGGTAGTGCTCCAGTCT
CAACAACACCATCATTTGGTGCTATCCCTTCTTCCCCAGTTGAAAAAACAACAGCAACAA
CAACAACAACAGCAACTCCTCATTCAAATACAGAATCATCACTATTTGGAAGCACACAAG
CCAATATCACTTCATTGTTTGGTGGCTCGTCTACTCCACAACCATCCACATTCTCATTTT
CAACACCACAATCAAAATTTNAAAATAATGATACCACNGATTATACTCCAACACCAACTG
ATAATATTACTCTACTTCAATTTCAGCAATGCCACAATTCTCAAATAAATCTGTNAAGAA
ATCAAACAGAACAAACAAAAAAATAATTGNAATCCAATAATAATAAAGATAAGAT
Length of 3' end seq. 655
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -