VHM584 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHM584
Library	VH (Link to library)
Clone ID	VHM584 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U11129-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHM5-D/VHM584Q.Seq.d/
Representative seq. ID	VHM584P (Link to Original site)
Representative DNA sequence	>VHM584 (VHM584Q) /CSM/VH/VHM5-D/VHM584Q.Seq.d/ ATCATTGTTAATAGCAAAAGAAAAATGGCAACAAAAAATACATCTCCTTATGAGATTGAA TATGCAAAGAGTGATAGATCAACATGTTCAACCTGTCAAAGAGGTATTAATAAAGAAGCA GTTCGTATTGGTTATAAAACAAAATCAAAACACTTTGATGGAATGGATGTATCATGGCAT CATTTAAAATGTAAATGTCCACAAGTACCATCATTTACAGATTTAATTCACTGGGAATAC CTTCGTTGGGAAGACCAATTATCAATTAAAACAACTTATTTTTCATCTGAAAAGTATGAT CCAAAATCAGCATCAGAGGTACAAAGAGAGAAATATTTAAAGGCATTATGGGAAGTTAAA GATAGTATTGCCGATAACTTGAAGGGACCAGCAATTAAAAACATCATTCAATATAATAAA GGTTATGTTGATAAGGTATCACCAGTTCATTTACTTCATACTCTCTCTGATTGGATGTTA AAAGGTCGTCCAGGTAGATGTCCAACTTGTAAGAATTTCGATATACTTTTCAATGGTATC GAATATCAATGTAAAGGTTGGATTTCAGGTTTCACAAAATGTGATTGGAAAGGTGATTCA ATTGAAAGATGXXXXXXXXXXCTCGAGGGTAACATGATTGAAAATCAATATATTACACTC AAAACCCAAACTCACTCCACTTGATAAAGATAGTGTAGTTTATAAAACCTTGGTAGATTA TGTTGCCAATAGTCAAGATAAACAATTTAGAACCAATATCTGTGTTCAAGATATTCTTTC ACTTGAGAGAGAGAATGAAAGTGAACGTTTCACTCCTTGGGCAAAAGATAAGAATAGATT ACTCTTATGGCATGGTAGTAGGTTAACTAATTTCGTATCGATTGTCTCGCAGGGATTAAG AATTGCTCCACCATCTGCTCCAAAAACTGGTTACAGATTTGGTAAAGGTATTTATTTTGC TGATTGTATTAGTAAATCATTCAGCTATTGTTTCACATCAAGTGATTGTCCAACTGCACT TATGTTATTATGTGAAGTTTCACTTGGTGACATGAATGAATTGAAACATGATACCTATAT GGAAGAGGCACCACATCCATTCCATAGTACAAAAGCTTTAGGTATGGCTGCTCCTCACAA AGATGGTAATCATCCTCTTTCTGATTCTGATGGTTTAGTAGTACCATTAGGTAAAATTTC AAAGACTGGTCTCTCAACTTCATGTACTCACAATGAATTCATTGTCTATAAAATGAACAA GTCAGAATCAAATACATCTTAAGAGTTTACAAGGAAAATAAAAAAAANAAATTTTTAAAA TATCCTNAATTTTT
sequence update	2002.10.25
Translated Amino Acid sequence	IIVNSKRKMATKNTSPYEIEYAKSDRSTCSTCQRGINKEAVRIGYKTKSKHFDGMDVSWH HLKCKCPQVPSFTDLIHWEYLRWEDQLSIKTTYFSSEKYDPKSASEVQREKYLKALWEVK DSIADNLKGPAIKNIIQYNKGYVDKVSPVHLLHTLSDWMLKGRPGRCPTCKNFDILFNGI EYQCKGWISGFTKCDWKGDSIER--- ---LEGNMIENQYITLKTQTHST*rcslnlgrlccqsrtinqylcsrysfter ektfhslgkreitlmawvnfridclagikncsticsknwlqiwrylfcly* iiqllfhiklsnctyvimsftwheietylygrgttsipyksfrygcssqrws ssffwfsstirnfkdwslnfmysqihcl*neqvrikyilrvykenkkxkflkypxf
Translated Amino Acid sequence (All Frames)	Frame A: IIVNSKRKMATKNTSPYEIEYAKSDRSTCSTCQRGINKEAVRIGYKTKSKHFDGMDVSWH HLKCKCPQVPSFTDLIHWEYLRWEDQLSIKTTYFSSEKYDPKSASEVQREKYLKALWEVK DSIADNLKGPAIKNIIQYNKGYVDKVSPVHLLHTLSDWMLKGRPGRCPTCKNFDILFNGI EYQCKGWISGFTKCDWKGDSIER--- ---LEGNMIENQYITLKTQTHST*rcslnlgrlccqsrtinqylcsrysfter ektfhslgkreitlmawvnfridclagikncsticsknwlqiwrylfcly* iiqllfhiklsnctyvimsftwheietylygrgttsipyksfrygcssqrws ssffwfsstirnfkdwslnfmysqihclneqvrikyilrvykenkkxkflkypxf Frame B: slliakekwqqkihllmrlnmqrvidqhvqpvkevlikkqfvlvikqnqntlmewmyhgi invnvhkyhhlqiftgntfvgktnyqlkqlifhlksmiqnqhqrykernirhygklk ivlpitrdqqlktsfniikvmliryhqfiyfilsligckvvqvdvqlvrisiyfsmvs ninvkvgfqvsqnvigkviqlkd--- ---srvtlkinilhskpkltpldkdsvvyktlvdyvansqdkqfrtnicvqdilslere neserftpwakdknrlllwhgsrltnfvsivsqglriappsapktgyrfgkgiyfadcis ksfsycftssdcptalmllcevslgdmnelkhdtymeeaphpfhstkalgmaaphkdgnh plsdsdglvvplgkisktglstscthnefivykmnksesntseftrkikkxnfnilnf Frame C: hcqkkngnkkyisldickeinmfnlskryrsssywlnkiktlwngcimas fkmmststiiyrfnslgipslgrpiinnnlffikvskisirgtkreifkgimgsr ycrlegtsnkhhsirlcgitssftsyslldvkrssrmsnlefrytfqwyr ismrldfrfhkmlerfnkm--- ---rghdksiyytqnpnslhlikivfikpwimlpivkinnlepisvfkiffhlrer mkvnvsllgqkiridysygmvvglisyrlsrrdellhhllqklvtdlvkvfillivlv nhsaivshqvivqlhlcyyvkfhlvtmnnmipiwkrhhihsivqklvwllltkmvii lflilmvyhvkfqrlvsqlhvltmnslsiktsqnqihlkslqgkkkxifkisxif
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHM584 (VHM584Q) /CSM/VH/VHM5-D/VHM584Q.Seq.d/ 2526 0.0 AHO201 (AHO201Q) /CSM/AH/AHO2-A/AHO201Q.Seq.d/ 1324 0.0 SHF852 (SHF852Q) /CSM/SH/SHF8-C/SHF852Q.Seq.d/ 1316 0.0 VHD227 (VHD227Q) /CSM/VH/VHD2-B/VHD227Q.Seq.d/ 1314 0.0 VHB869 (VHB869Q) /CSM/VH/VHB8-C/VHB869Q.Seq.d/ 1314 0.0 SHK889 (SHK889Q) /CSM/SH/SHK8-D/SHK889Q.Seq.d/ 1314 0.0 SHJ664 (SHJ664Q) /CSM/SH/SHJ6-C/SHJ664Q.Seq.d/ 1314 0.0 AHM424 (AHM424Q) /CSM/AH/AHM4-A/AHM424Q.Seq.d/ 1314 0.0 AHM188 (AHM188Q) /CSM/AH/AHM1-D/AHM188Q.Seq.d/ 1314 0.0 AHF690 (AHF690Q) /CSM/AH/AHF6-D/AHF690Q.Seq.d/ 1314 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ444582) Dictyostelium discoideum cDNA clone:ddv56g21, 3' ... 1344 0.0 2 (BJ356018) Dictyostelium discoideum cDNA clone:dda59a02, 3' ... 1255 0.0 2 (BJ383230) Dictyostelium discoideum cDNA clone:ddc52e12, 3' ... 1247 0.0 2 (BJ406530) Dictyostelium discoideum cDNA clone:dds35h14, 3' ... 1241 0.0 2 (BJ352068) Dictyostelium discoideum cDNA clone:dda45d18, 3' ... 1239 0.0 2 (BJ348374) Dictyostelium discoideum cDNA clone:dda33d03, 3' ... 1239 0.0 2 (BJ409249) Dictyostelium discoideum cDNA clone:dds40b09, 3' ... 1233 0.0 2 (BJ381532) Dictyostelium discoideum cDNA clone:ddc41g21, 3' ... 1223 0.0 1 (BJ372386) Dictyostelium discoideum cDNA clone:ddc12m10, 3' ... 1221 0.0 2 (BJ353615) Dictyostelium discoideum cDNA clone:dda50i24, 3' ... 1217 0.0 2
dna update	2008.12. 2
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value PDBF(1A26) MOL_ID: 1; MOLECULE: POLY (ADP-RIBOSE) POLYMERASE; CH... 174 8e-42 X65497_1(X65497\|pid:none) R.norvegicus mRNA for poly(ADP-ribose)... 174 8e-42 (P26446) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 174 8e-42 (P27008) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 174 8e-42 AK303340_1(AK303340\|pid:none) Homo sapiens cDNA FLJ53442 complet... 172 2e-41 (Q9R152) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 172 3e-41 AK312339_1(AK312339\|pid:none) Homo sapiens cDNA, FLJ92658, highl... 171 4e-41 J03473_1(J03473\|pid:none) Human poly(ADP-ribose) synthetase mRNA... 171 4e-41 AB384394_1(AB384394\|pid:none) Synthetic construct DNA, clone: pF... 171 4e-41 M17081_1(M17081\|pid:none) Human placental poly(ADP-ribose) polym... 171 4e-41
protein update	2009. 7.17
PSORT	psg: 0.69 gvh: 0.23 alm: 0.54 top: 0.53 tms: 0.00 mit: 0.38 mip: 0.03 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: nuclear 28.0 %: mitochondrial 20.0 %: cytoplasmic 4.0 %: cytoskeletal 4.0 %: peroxisomal >> prediction for VHM584 is nuc
5' end seq. ID	VHM584F
5' end seq.	>VHM584F.Seq ATCATTGTTAATAGCAAAAGAAAAATGGCAACAAAAAATACATCTCCTTATGAGATTGAA TATGCAAAGAGTGATAGATCAACATGTTCAACCTGTCAAAGAGGTATTAATAAAGAAGCA GTTCGTATTGGTTATAAAACAAAATCAAAACACTTTGATGGAATGGATGTATCATGGCAT CATTTAAAATGTAAATGTCCACAAGTACCATCATTTACAGATTTAATTCACTGGGAATAC CTTCGTTGGGAAGACCAATTATCAATTAAAACAACTTATTTTTCATCTGAAAAGTATGAT CCAAAATCAGCATCAGAGGTACAAAGAGAGAAATATTTAAAGGCATTATGGGAAGTTAAA GATAGTATTGCCGATAACTTGAAGGGACCAGCAATTAAAAACATCATTCAATATAATAAA GGTTATGTTGATAAGGTATCACCAGTTCATTTACTTCATACTCTCTCTGATTGGATGTTA AAAGGTCGTCCAGGTAGATGTCCAACTTGTAAGAATTTCGATATACTTTTCAATGGTATC GAATATCAATGTAAAGGTTGGATTTCAGGTTTCACAAAATGTGATTGGAAAGGTGATTCA ATTGAAAGATGNNNNNNNNNN
Length of 5' end seq.	621
3' end seq. ID	VHM584Z
3' end seq.	>VHM584Z.Seq NNNNNNNNNNCTCGAGGGTAACATGATTGAAAATCAATATATTACACTCAAAACCCAAAC TCACTCCACTTGATAAAGATAGTGTAGTTTATAAAACCTTGGTAGATTATGTTGCCAATA GTCAAGATAAACAATTTAGAACCAATATCTGTGTTCAAGATATTCTTTCACTTGAGAGAG AGAATGAAAGTGAACGTTTCACTCCTTGGGCAAAAGATAAGAATAGATTACTCTTATGGC ATGGTAGTAGGTTAACTAATTTCGTATCGATTGTCTCGCAGGGATTAAGAATTGCTCCAC CATCTGCTCCAAAAACTGGTTACAGATTTGGTAAAGGTATTTATTTTGCTGATTGTATTA GTAAATCATTCAGCTATTGTTTCACATCAAGTGATTGTCCAACTGCACTTATGTTATTAT GTGAAGTTTCACTTGGTGACATGAATGAATTGAAACATGATACCTATATGGAAGAGGCAC CACATCCATTCCATAGTACAAAAGCTTTAGGTATGGCTGCTCCTCACAAAGATGGTAATC ATCCTCTTTCTGATTCTGATGGTTTAGTAGTACCATTAGGTAAAATTTCAAAGACTGGTC TCTCAACTTCATGTACTCACAATGAATTCATTGTCTATAAAATGAACAAGTCAGAATCAA ATACATCTTAAGAGTTTACAAGGAAAATAAAAAAAANAAATTTTTAAAATATCCTNAATT TTT
Length of 3' end seq.	723
Connected seq. ID	VHM584P
Connected seq.	>VHM584P.Seq ATCATTGTTAATAGCAAAAGAAAAATGGCAACAAAAAATACATCTCCTTATGAGATTGAA TATGCAAAGAGTGATAGATCAACATGTTCAACCTGTCAAAGAGGTATTAATAAAGAAGCA GTTCGTATTGGTTATAAAACAAAATCAAAACACTTTGATGGAATGGATGTATCATGGCAT CATTTAAAATGTAAATGTCCACAAGTACCATCATTTACAGATTTAATTCACTGGGAATAC CTTCGTTGGGAAGACCAATTATCAATTAAAACAACTTATTTTTCATCTGAAAAGTATGAT CCAAAATCAGCATCAGAGGTACAAAGAGAGAAATATTTAAAGGCATTATGGGAAGTTAAA GATAGTATTGCCGATAACTTGAAGGGACCAGCAATTAAAAACATCATTCAATATAATAAA GGTTATGTTGATAAGGTATCACCAGTTCATTTACTTCATACTCTCTCTGATTGGATGTTA AAAGGTCGTCCAGGTAGATGTCCAACTTGTAAGAATTTCGATATACTTTTCAATGGTATC GAATATCAATGTAAAGGTTGGATTTCAGGTTTCACAAAATGTGATTGGAAAGGTGATTCA ATTGAAAGATG----------CTCGAGGGTAACATGATTGAAAATCAATATATTACACTC AAAACCCAAACTCACTCCACTTGATAAAGATAGTGTAGTTTATAAAACCTTGGTAGATTA TGTTGCCAATAGTCAAGATAAACAATTTAGAACCAATATCTGTGTTCAAGATATTCTTTC ACTTGAGAGAGAGAATGAAAGTGAACGTTTCACTCCTTGGGCAAAAGATAAGAATAGATT ACTCTTATGGCATGGTAGTAGGTTAACTAATTTCGTATCGATTGTCTCGCAGGGATTAAG AATTGCTCCACCATCTGCTCCAAAAACTGGTTACAGATTTGGTAAAGGTATTTATTTTGC TGATTGTATTAGTAAATCATTCAGCTATTGTTTCACATCAAGTGATTGTCCAACTGCACT TATGTTATTATGTGAAGTTTCACTTGGTGACATGAATGAATTGAAACATGATACCTATAT GGAAGAGGCACCACATCCATTCCATAGTACAAAAGCTTTAGGTATGGCTGCTCCTCACAA AGATGGTAATCATCCTCTTTCTGATTCTGATGGTTTAGTAGTACCATTAGGTAAAATTTC AAAGACTGGTCTCTCAACTTCATGTACTCACAATGAATTCATTGTCTATAAAATGAACAA GTCAGAATCAAATACATCTTAAGAGTTTACAAGGAAAATAAAAAAAANAAATTTTTAAAA TATCCTNAATTTTT
Length of connected seq.	1324
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas