VHM533
Library VH
(Link to library)
Clone ID VHM533
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15679-1
Original site URL
Representative seq. ID VHM533P
(Link to Original site)
Representative DNA sequence
>VHM533 (VHM533Q) /CSM/VH/VHM5-B/VHM533Q.Seq.d/
AATTAACAAATTTTTTATTAAATTAAGTTAAAAATGGACTCATTGCTTAAAATTCTAAAC
ATAAAGTTTTTTTAAAAAAAAAATCAAAATAATAATCAAAGACATGCACTTAAAACTGAA
ATTAAAACAGTTTTTAATTCAGATAGTGGTGTTACTTATTTTTCAATTTTAATTGAAACA
TCATCAAAAATGTCATTGTATAATGTAATTATTAAGACATTTATTACTCAACTTCAAAAA
GCTAATAGAGAGTGTCAAATTCAAATCATTACCTATGGTGATAGTGTTAATACAATCTTT
GAATTTGATTCGGAACCAAATGAATTAAAAGATAGCTTAAAAGAAATTAAATTCTCTAAA
GATAATGAAGAAGCAAAATTGGGTGAAGCAATGAGAATGTGTTTCAATAATATCGAATCC
AATTGGTCCAGTGATTTAATGTCAAAGATCATCATCATCAGTTCGGGTCAATCTACTGAT
GATTCAAGTGATGATTTAGTTGATATCTTGAGTTTGGATAATAATAGTATCTATGGTTTG
GCAGGXXXXXXXXXXTCAGGTCAAGAGTCAAATACCTTNATCATTAGTAATTACACTGAA
AAAGAAACTCATAAAGATATCTCTAAAGATGTTCAATATCTTAGATTATTAACCAAAGCA
GTTCAATTGTGTAAAGTTAAAAATGAAAAAGATATAATGANCAAAGTTAAAGGTATTTCA
AATTTATCAATTAATGATAATAATAATAGTTTTAATCAAACTCCAATTAAAAATCAACCT
TTTTTTGAATCATCATCAACTTCTTCACCTTCACCAGCTTTCTTTAGATCACCAATTCAA
CAACAACAACAACAAACCTCTACCACTTCAACTCAATCACCATCACCATCATCTTCATCA
GCATCAACACCACCACCACCATCACAAATGCTTAATGAACAACCAAGTAAAACTATCAAT
GTAACTATTGATGTAGTTACTGATTCAAGTGGTACCGTTTTAACTTCATTCGAAATTGAA
TCTTCAACAAATGAATCTGTCTCTGAATTAAAATGTAAACTTATTAATGAAATTGATCCT
GAAATGAATGCTAANGATTGGAGTATTACAAAAGAATCTGGTACAGTTTTATTCGAATCT
GCAAGATTATCATCCATTATTAAATCTTTTGATAATTCAGATTCCATTAAATGGTTTTAA
AGAAAAAACAAAAATTTTTTAAAAATTAACANAACTAATATAGGGAAAAAAAAAAAAAAA
ATAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
n*qify*iklkmdsllkilnikff*KKNQNNNQRHALKTEIKTVFNSDSGVTYFSILIET
SSKMSLYNVIIKTFITQLQKANRECQIQIITYGDSVNTIFEFDSEPNELKDSLKEIKFSK
DNEEAKLGEAMRMCFNNIESNWSSDLMSKIIIISSGQSTDDSSDDLVDILSLDNNSIYGL
A---

---SGQESNTXIISNYTEKETHKDISKDVQYLRLLTKAVQLCKVKNEKDIMXKVKGISNL
SINDNNNSFNQTPIKNQPFFESSSTSSPSPAFFRSPIQQQQQQTSTTSTQSPSPSSSSAS
TPPPPSQMLNEQPSKTINVTIDVVTDSSGTVLTSFEIESSTNESVSELKCKLINEIDPEM
NAXDWSITKESGTVLFESARLSSIIKSFDNSDSIKWF*rknknflkinxtnigkkkkkik


Translated Amino Acid sequence (All Frames)
Frame A:
n*qify*iklkmdsllkilnikff*KKNQNNNQRHALKTEIKTVFNSDSGVTYFSILIET
SSKMSLYNVIIKTFITQLQKANRECQIQIITYGDSVNTIFEFDSEPNELKDSLKEIKFSK
DNEEAKLGEAMRMCFNNIESNWSSDLMSKIIIISSGQSTDDSSDDLVDILSLDNNSIYGL
A---

---SGQESNTXIISNYTEKETHKDISKDVQYLRLLTKAVQLCKVKNEKDIMXKVKGISNL
SINDNNNSFNQTPIKNQPFFESSSTSSPSPAFFRSPIQQQQQQTSTTSTQSPSPSSSSAS
TPPPPSQMLNEQPSKTINVTIDVVTDSSGTVLTSFEIESSTNESVSELKCKLINEIDPEM
NAXDWSITKESGTVLFESARLSSIIKSFDNSDSIKWF*rknknflkinxtnigkkkkkik

Frame B:
inkffikls*kwthclkf*t*sffkkkikiiikdmhlklklkqfliqivvllifqf*lkh
hqkchcim*llrhlllnfkkliesvkfkslpmvivliqslnlirnqmn*kia*kklnslk
imkkqnwvkq*ecvsiisnpigpvi*cqrssssvrvnllmiqvmi*lis*vwiiivsmvw
q---

---qvksqipxslvitlkkklikislkmfnildy*pkqfncvklkmkki**xklkvfqiy
qlmiiiivliklqlkinlflnhhqllhlhqlsldhqfnnnnnkplplqlnhhhhhlhqhq
hhhhhhkclmnnqvklsm*llm*lliqvvpf*lhsklnlqqmnlsln*nvnllmklilk*
mlxigvlqknlvqfysnlqdyhpllnlliiqiplngfkektkif*kltxli*gkkkkk*k

Frame C:
ltnflln*vknglia*nskhkvflkkksk**sktct*n*n*nsf*fr*wcylffnfn*ni
iknviv*cny*diyystsks**rvsnsnhylw**c*ynl*i*fgtk*ikr*lkrn*il*r
**rskig*snenvfq*yriqlvq*fnvkdhhhqfgsiy**fk**fs*ylefg***ylwfg
r---

---rsrvkylxh**lh*krns*ryl*rcsis*iinqsssiv*s*k*krynxqs*ryfkfi
n******f*snsn*kstff*iiinfftftsfl*itnstttttnlyhfnsititiifisin
ttttitna**ttk*nyqcny*csy*fkwyrfnfirn*ifnk*icl*ikm*ty**n*s*ne
c*xleyykriwysfirickiiihy*if**frfh*mvlkkkqkffkn*xn*yrekkkknkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHM533 (VHM533Q) /CSM/VH/VHM5-B/VHM533Q.Seq.d/ 1487 0.0
CHI279 (CHI279Q) /CSM/CH/CHI2-D/CHI279Q.Seq.d/ 1015 0.0
CHE682 (CHE682Q) /CSM/CH/CHE6-D/CHE682Q.Seq.d/ 1015 0.0
AHM223 (AHM223Q) /CSM/AH/AHM2-A/AHM223Q.Seq.d/ 963 0.0
AHA357 (AHA357Q) /CSM/AH/AHA3-C/AHA357Q.Seq.d/ 916 0.0
AHA131 (AHA131Q) /CSM/AH/AHA1-B/AHA131Q.Seq.d/ 916 0.0
CHK873 (CHK873Q) /CSM/CH/CHK8-D/CHK873Q.Seq.d/ 912 0.0
SSK247 (SSK247Q) /CSM/SS/SSK2-B/SSK247Q.Seq.d/ 904 0.0
AHI541 (AHI541Q) /CSM/AH/AHI5-B/AHI541Q.Seq.d/ 904 0.0
SHE684 (SHE684Q) /CSM/SH/SHE6-D/SHE684Q.Seq.d/ 894 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ425593) Dictyostelium discoideum cDNA clone:ddv56a09, 5' ... 912 0.0 2
(BJ366422) Dictyostelium discoideum cDNA clone:ddc38m20, 5' ... 906 0.0 2
(BJ364451) Dictyostelium discoideum cDNA clone:ddc31c22, 5' ... 906 0.0 2
(BJ444390) Dictyostelium discoideum cDNA clone:ddv56a09, 3' ... 513 0.0 3
(BJ380668) Dictyostelium discoideum cDNA clone:ddc38m20, 3' ... 505 0.0 3
(BJ352114) Dictyostelium discoideum cDNA clone:dda45n13, 3' ... 513 0.0 3
(BJ347814) Dictyostelium discoideum cDNA clone:dda31c10, 3' ... 505 0.0 3
(BJ354590) Dictyostelium discoideum cDNA clone:dda54j04, 3' ... 500 0.0 3
(BJ350255) Dictyostelium discoideum cDNA clone:dda39b12, 3' ... 498 0.0 3
(BJ336799) Dictyostelium discoideum cDNA clone:dda55m06, 5' ... 912 0.0 2
dna update 2008.12. 1
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116305_17(AC116305|pid:none) Dictyostelium discoideum chromoso... 132 3e-29
T25223(T25223) hypothetical protein T24B8.2 - Caenorhabditis ele... 35 5.7
CP001083_2626(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 35 5.7
CP000939_1534(CP000939|pid:none) Clostridium botulinum B1 str. O... 35 7.5
CP000777_231(CP000777|pid:none) Leptospira biflexa serovar Patoc... 35 7.5
CP000962_1611(CP000962|pid:none) Clostridium botulinum A3 str. L... 35 7.5
AB049544_1(AB049544|pid:none) Porcine enterovirus 10 gene for RN... 34 9.8
AF363453_1(AF363453|pid:none) Porcine enterovirus 9 strain UKG/4... 34 9.8

protein update 2009. 7.17
PSORT

psg: 0.55 gvh: 0.39 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
32.0 %: cytoplasmic
20.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: extracellular, including cell wall
4.0 %: endoplasmic reticulum

>> prediction for VHM533 is nuc

5' end seq. ID VHM533F
5' end seq.
>VHM533F.Seq
AATTAACAAATTTTTTATTAAATTAAGTTAAAAATGGACTCATTGCTTAAAATTCTAAAC
ATAAAGTTTTTTTAAAAAAAAAATCAAAATAATAATCAAAGACATGCACTTAAAACTGAA
ATTAAAACAGTTTTTAATTCAGATAGTGGTGTTACTTATTTTTCAATTTTAATTGAAACA
TCATCAAAAATGTCATTGTATAATGTAATTATTAAGACATTTATTACTCAACTTCAAAAA
GCTAATAGAGAGTGTCAAATTCAAATCATTACCTATGGTGATAGTGTTAATACAATCTTT
GAATTTGATTCGGAACCAAATGAATTAAAAGATAGCTTAAAAGAAATTAAATTCTCTAAA
GATAATGAAGAAGCAAAATTGGGTGAAGCAATGAGAATGTGTTTCAATAATATCGAATCC
AATTGGTCCAGTGATTTAATGTCAAAGATCATCATCATCAGTTCGGGTCAATCTACTGAT
GATTCAAGTGATGATTTAGTTGATATCTTGAGTTTGGATAATAATAGTATCTATGGTTTG
GCAGGNNNNNNNNNN
Length of 5' end seq. 555
3' end seq. ID VHM533Z
3' end seq.
>VHM533Z.Seq
NNNNNNNNNNTCAGGTCAAGAGTCAAATACCTTNATCATTAGTAATTACACTGAAAAAGA
AACTCATAAAGATATCTCTAAAGATGTTCAATATCTTAGATTATTAACCAAAGCAGTTCA
ATTGTGTAAAGTTAAAAATGAAAAAGATATAATGANCAAAGTTAAAGGTATTTCAAATTT
ATCAATTAATGATAATAATAATAGTTTTAATCAAACTCCAATTAAAAATCAACCTTTTTT
TGAATCATCATCAACTTCTTCACCTTCACCAGCTTTCTTTAGATCACCAATTCAACAACA
ACAACAACAAACCTCTACCACTTCAACTCAATCACCATCACCATCATCTTCATCAGCATC
AACACCACCACCACCATCACAAATGCTTAATGAACAACCAAGTAAAACTATCAATGTAAC
TATTGATGTAGTTACTGATTCAAGTGGTACCGTTTTAACTTCATTCGAAATTGAATCTTC
AACAAATGAATCTGTCTCTGAATTAAAATGTAAACTTATTAATGAAATTGATCCTGAAAT
GAATGCTAANGATTGGAGTATTACAAAAGAATCTGGTACAGTTTTATTCGAATCTGCAAG
ATTATCATCCATTATTAAATCTTTTGATAATTCAGATTCCATTAAATGGTTTTAAAGAAA
AAACAAAAATTTTTTAAAAATTAACANAACTAATATAGGGAAAAAAAAAAAAAAAATAAA
AAA
Length of 3' end seq. 723
Connected seq. ID VHM533P
Connected seq.
>VHM533P.Seq
AATTAACAAATTTTTTATTAAATTAAGTTAAAAATGGACTCATTGCTTAAAATTCTAAAC
ATAAAGTTTTTTTAAAAAAAAAATCAAAATAATAATCAAAGACATGCACTTAAAACTGAA
ATTAAAACAGTTTTTAATTCAGATAGTGGTGTTACTTATTTTTCAATTTTAATTGAAACA
TCATCAAAAATGTCATTGTATAATGTAATTATTAAGACATTTATTACTCAACTTCAAAAA
GCTAATAGAGAGTGTCAAATTCAAATCATTACCTATGGTGATAGTGTTAATACAATCTTT
GAATTTGATTCGGAACCAAATGAATTAAAAGATAGCTTAAAAGAAATTAAATTCTCTAAA
GATAATGAAGAAGCAAAATTGGGTGAAGCAATGAGAATGTGTTTCAATAATATCGAATCC
AATTGGTCCAGTGATTTAATGTCAAAGATCATCATCATCAGTTCGGGTCAATCTACTGAT
GATTCAAGTGATGATTTAGTTGATATCTTGAGTTTGGATAATAATAGTATCTATGGTTTG
GCAGG----------TCAGGTCAAGAGTCAAATACCTTNATCATTAGTAATTACACTGAA
AAAGAAACTCATAAAGATATCTCTAAAGATGTTCAATATCTTAGATTATTAACCAAAGCA
GTTCAATTGTGTAAAGTTAAAAATGAAAAAGATATAATGANCAAAGTTAAAGGTATTTCA
AATTTATCAATTAATGATAATAATAATAGTTTTAATCAAACTCCAATTAAAAATCAACCT
TTTTTTGAATCATCATCAACTTCTTCACCTTCACCAGCTTTCTTTAGATCACCAATTCAA
CAACAACAACAACAAACCTCTACCACTTCAACTCAATCACCATCACCATCATCTTCATCA
GCATCAACACCACCACCACCATCACAAATGCTTAATGAACAACCAAGTAAAACTATCAAT
GTAACTATTGATGTAGTTACTGATTCAAGTGGTACCGTTTTAACTTCATTCGAAATTGAA
TCTTCAACAAATGAATCTGTCTCTGAATTAAAATGTAAACTTATTAATGAAATTGATCCT
GAAATGAATGCTAANGATTGGAGTATTACAAAAGAATCTGGTACAGTTTTATTCGAATCT
GCAAGATTATCATCCATTATTAAATCTTTTGATAATTCAGATTCCATTAAATGGTTTTAA
AGAAAAAACAAAAATTTTTTAAAAATTAACANAACTAATATAGGGAAAAAAAAAAAAAAA
ATAAAAAA
Length of connected seq. 1258
Full length Seq ID -
Full length Seq. -
Length of full length seq. -