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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHM378
Library VH
(Link to library)
Clone ID VHM378
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14806-1
Original site URL
Representative seq. ID VHM378P
(Link to Original site)
Representative DNA sequence 
>VHM378 (VHM378Q) /CSM/VH/VHM3-D/VHM378Q.Seq.d/
AATAAATTTAAAAAAAAAAATGAAGGAAAACTCTTTTAATAATTTTAATTTTAATTTCTA
TAATTTTTATAAATAATTGTATTGCAGGAACATGTGGAAATGGCTGTTTAAATGGNGGTA
CCTGTAATTCAAATANCCAATGTACAXXXXXXXXXXAAAAAAATTAATTAAATAAATTAG
GATATTAAATAAATAAATTTAAAAAAAAAAATGAAGAAAACTCTTTTAATAATTTTAATT
TTAATTTCTATAATTTTTATAAATAATTGTATTGCAGGAACATGTGGAAATGGCTGTTTA
AATGGTGGTACCTGTAATTCAAATAACCAATGTACATGCACTAATCAATGGACTGGAAAT
GATTGCTCAACTAAAAAAATCCAAGTTTATTCAATTTTCCCATCATACACTGACGGTGGT
GAAGTGATTTTCTATGGTTGGTTCACAGCAAATTCTCCAATTTCTATCTTAATTGGAAGT
CAAACTTGTACTCCAACCCTTGTTACTACTGATCAAATTAAATGTAATATTGGTGCTGGT
AATGGTGTAAAGGATATTTCAATCACTCAAGCTGGTTATACTTGGTTTTCTCCAAACTCC
TATGAATATGTTATTAGACCAACCACTCCTGCAAAGTTGTCCAACAAATTGCTCAAATAG
sequence update 2002.10.25
Translated Amino Acid sequence 
*i*kkk*RKTLLIILILISIIFINNCIAGTCGNGCLNGGTCNSNXQCT---

---KKLIK*irilnk*i*kkk*rklf**f*f*fl*fl*iivlqehvemav*mvvpviqit
nvhalinglemiaqlkkskfiqfshhtltvvk*fsmvgsqqilqfls*levklvlqplll
liklnvilvlvmv*rifqslklvilgflqtpmnmlldqpllqscptncsn
Translated Amino Acid sequence (All Frames) 
Frame A:
nkfkkknegklf**f*f*fl*fl*iivlqehvemav*mxvpviqixnv---

---kkin*in*dik*inlkkkmkktlliililisiifinnciagtcgngclnggtcnsnn
qctctnqwtgndcstkkiqvysifpsytdggevifygwftanspisiligsqtctptlvt
tdqikcnigagngvkdisitqagytwfspnsyeyvirpttpaklsnkllk*

Frame B:
inlkkkmkensfnnfnfnfynfyk*lycrnmwkwlfkwxyl*fkxpmy---

---KKLIK*irilnk*i*kkk*rklf**f*f*fl*fl*iivlqehvemav*mvvpviqit
nvhalinglemiaqlkkskfiqfshhtltvvk*fsmvgsqqilqfls*levklvlqplll
liklnvilvlvmv*rifqslklvilgflqtpmnmlldqpllqscptncsn

Frame C:
*i*kkk*RKTLLIILILISIIFINNCIAGTCGNGCLNGGTCNSNXQCT---

---kn*lnklgy*inkfkkkneensfnnfnfnfynfyk*lycrnmwkwlfkwwyl*fk*p
mymh*smdwk*lln*knpslfnfpiih*rw*sdflwlvhskfsnfylnwksnlysnpcyy
*sn*m*ywcw*wckgyfnhsswlylvfskll*icy*tnhsckvvqqiaqi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHM378 (VHM378Q) /CSM/VH/VHM3-D/VHM378Q.Seq.d/                        735   0.0
VSJ446 (VSJ446Q) /CSM/VS/VSJ4-B/VSJ446Q.Seq.d/                        720   0.0
VSH376 (VSH376Q) /CSM/VS/VSH3-D/VSH376Q.Seq.d/                        720   0.0
VSF647 (VSF647Q) /CSM/VS/VSF6-B/VSF647Q.Seq.d/                        720   0.0
VSF439 (VSF439Q) /CSM/VS/VSF4-B/VSF439Q.Seq.d/                        720   0.0
VHP143 (VHP143Q) /CSM/VH/VHP1-B/VHP143Q.Seq.d/                        720   0.0
VSK121 (VSK121Q) /CSM/VS/VSK1-A/VSK121Q.Seq.d/                        714   0.0
VSI251 (VSI251Q) /CSM/VS/VSI2-C/VSI251Q.Seq.d/                        712   0.0
VHG647 (VHG647Q) /CSM/VH/VHG6-B/VHG647Q.Seq.d/                        712   0.0
VSG790 (VSG790Q) /CSM/VS/VSG7-D/VSG790Q.Seq.d/                        708   0.0
own update 2003. 1. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ444291) Dictyostelium discoideum cDNA clone:ddv55l19, 3' ...   557   0.0    2
(AU265552) Dictyostelium discoideum vegetative cDNA clone:VS...   507   0.0    3
(BJ445992) Dictyostelium discoideum cDNA clone:ddv61e11, 3' ...   507   0.0    3
(AU267350) Dictyostelium discoideum vegetative cDNA clone:VS...   507   0.0    3
(AU265231) Dictyostelium discoideum vegetative cDNA clone:VS...   507   0.0    3
(AU269931) Dictyostelium discoideum vegetative cDNA clone:VS...   507   0.0    3
(AU270680) Dictyostelium discoideum vegetative cDNA clone:VS...   502   0.0    3
(AU268393) Dictyostelium discoideum vegetative cDNA clone:VS...   500   0.0    3
(BJ440682) Dictyostelium discoideum cDNA clone:ddv44m12, 3' ...   507   0.0    3
(AU266816) Dictyostelium discoideum vegetative cDNA clone:VS...   502   0.0    3
dna update 2008.11.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116963_42(AC116963|pid:none) Dictyostelium discoideum chromoso...    65   2e-09
AC116920_20(AC116920|pid:none) Dictyostelium discoideum chromoso...    63   4e-09
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso...    61   1e-08
AC116920_25(AC116920|pid:none) Dictyostelium discoideum chromoso...    62   1e-08
AC116982_41(AC116982|pid:none) Dictyostelium discoideum chromoso...    56   1e-06
AC117081_43(AC117081|pid:none) Dictyostelium discoideum chromoso...    54   5e-06
AC116984_28(AC116984|pid:none) Dictyostelium discoideum chromoso...    52   1e-05
AC117081_39(AC117081|pid:none) Dictyostelium discoideum chromoso...    49   1e-04
AC116960_61(AC116960|pid:none) Dictyostelium discoideum chromoso...    45   3e-04
AC116967_7(AC116967|pid:none) Dictyostelium discoideum chromosom...    46   9e-04
protein update 2009. 3.15
PSORT 

 psg: 1.00  gvh: 0.59  alm: 0.16  top: 0.53  tms: 0.07  mit: 0.41  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: mitochondrial
	 16.0 %: cytoplasmic
	 16.0 %: endoplasmic reticulum
	 12.0 %: Golgi
	 12.0 %: nuclear
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane

>> prediction for VHM378 is mit
5' end seq. ID VHM378F
5' end seq. 
>VHM378F.Seq
AATAAATTTAAAAAAAAAAATGAAGGAAAACTCTTTTAATAATTTTAATTTTAATTTCTA
TAATTTTTATAAATAATTGTATTGCAGGAACATGTGGAAATGGCTGTTTAAATGGNGGTA
CCTGTAATTCAAATANCCAATGTACANNNNNNNNNN
Length of 5' end seq. 156
3' end seq. ID VHM378Z
3' end seq. 
>VHM378Z.Seq
NNNNNNNNNNAAAAAAATTAATTAAATAAATTAGGATATTAAATAAATAAATTTAAAAAA
AAAAATGAAGAAAACTCTTTTAATAATTTTAATTTTAATTTCTATAATTTTTATAAATAA
TTGTATTGCAGGAACATGTGGAAATGGCTGTTTAAATGGTGGTACCTGTAATTCAAATAA
CCAATGTACATGCACTAATCAATGGACTGGAAATGATTGCTCAACTAAAAAAATCCAAGT
TTATTCAATTTTCCCATCATACACTGACGGTGGTGAAGTGATTTTCTATGGTTGGTTCAC
AGCAAATTCTCCAATTTCTATCTTAATTGGAAGTCAAACTTGTACTCCAACCCTTGTTAC
TACTGATCAAATTAAATGTAATATTGGTGCTGGTAATGGTGTAAAGGATATTTCAATCAC
TCAAGCTGGTTATACTTGGTTTTCTCCAAACTCCTATGAATATGTTATTAGACCAACCAC
TCCTGCAAAGTTGTCCAACAAATTGCTCAAATAG
Length of 3' end seq. 514
Connected seq. ID VHM378P
Connected seq. 
>VHM378P.Seq
AATAAATTTAAAAAAAAAAATGAAGGAAAACTCTTTTAATAATTTTAATTTTAATTTCTA
TAATTTTTATAAATAATTGTATTGCAGGAACATGTGGAAATGGCTGTTTAAATGGNGGTA
CCTGTAATTCAAATANCCAATGTACA----------AAAAAAATTAATTAAATAAATTAG
GATATTAAATAAATAAATTTAAAAAAAAAAATGAAGAAAACTCTTTTAATAATTTTAATT
TTAATTTCTATAATTTTTATAAATAATTGTATTGCAGGAACATGTGGAAATGGCTGTTTA
AATGGTGGTACCTGTAATTCAAATAACCAATGTACATGCACTAATCAATGGACTGGAAAT
GATTGCTCAACTAAAAAAATCCAAGTTTATTCAATTTTCCCATCATACACTGACGGTGGT
GAAGTGATTTTCTATGGTTGGTTCACAGCAAATTCTCCAATTTCTATCTTAATTGGAAGT
CAAACTTGTACTCCAACCCTTGTTACTACTGATCAAATTAAATGTAATATTGGTGCTGGT
AATGGTGTAAAGGATATTTCAATCACTCAAGCTGGTTATACTTGGTTTTCTCCAAACTCC
TATGAATATGTTATTAGACCAACCACTCCTGCAAAGTTGTCCAACAAATTGCTCAAATAG
Length of connected seq. 650
Full length Seq ID -
Full length Seq. -
Length of full length seq. -