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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHM348
Library VH
(Link to library)
Clone ID VHM348
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12088-1
Original site URL
Representative seq. ID VHM348P
(Link to Original site)
Representative DNA sequence 
>VHM348 (VHM348Q) /CSM/VH/VHM3-B/VHM348Q.Seq.d/
TGTTGGCCTACTGGTGAAGCCGGTGCAAAAATTACAACTGCAGCTAATTTATTCAAGAAA
ACCGATATATTACTAAAGGTTAGAGGTCCACAATTTAATACAAACTTGGGTAAACATGAA
GTTGAAATGATGAAAGAAGGTGCTACAGTAATTAGCTTTTTATCACCAGCACAAAATGCA
GAAACTTTAAAGTTACTATCACAAAAGAAAGCTAATGCCATTGCAGTTGATTGTATACCA
AGAATTAGTAGAGCACAGGTTTTTGATGGTTTATCATCAATGGCAAATATTGCAGGTTAT
AAAGCAGTGATGGAGGCATCCAACTATTTTGGTAGATTCTTTGGTGGAGCCATTACAGCC
GCTGGTAGAGTTCAGCCTGCTAAAGTATTGGTTATTGGTGCTGGTGTTGCTGGTTTATCT
GCTATTGGTACCGCTAAAAATATTGGTGCTATCGTTAGAGCATTCGATACTAGATCTGTT
ACCAAAGAACAAGTTGAATCATTGGGTGGTGAATTTTTAGAAGTGAAAATCAAAGAXXXX
XXXXXXGTGTAAAGCTATGAATAGAAATCTTATGAGTGTTATTTTTAGGTGGGTGTTGGT
ACATCAAGTATGGGAAAAGGTGAAGCAATGAAAATCACAGGTACTCACACTGAAATCAAT
GTTGATCAAGCAAGTGAAATGATTACCAACTCTAAAAATATTCTCATTGTACCAGGTTAT
GGTATGGTTGTTAGTAAAAGTCAATATCCAGTTGCAGAGATGGTTAAAACTTTAATTGAA
AAAGGTCACAATGTTAAATTTGGTATTCATCCAGTAGCAGGTAGATTACCAGGTCACTTG
AATATTTGCTTAAGTGAAGCAAAGGTTCCATATGACATTGTTTTCGAAATGGAAGAAATT
AATCCAGAAATGAAAGATATAGATTTAGCAATCGTAATTGGTGCAAATGATACCGTCAAT
AGTGCATCAGTTGAAGATCCAAATTCAATTATCGCTGGTATGCCAGTTATTGAAGTTTGG
AAAGCAAAACATTGTATCGTTATGAAACGTTCATTAACAAATGCTGGTTATGCCGATATT
CAAAATCCAGTATTTTATAAACCAAATACTTCAATGTTATTAGGTGATGCTACAAACACT
TGTAAAGAATGGCAAATAAAATAGAATAAACATTAT
sequence update 2002.10.25
Translated Amino Acid sequence 
CWPTGEAGAKITTAANLFKKTDILLKVRGPQFNTNLGKHEVEMMKEGATVISFLSPAQNA
ETLKLLSQKKANAIAVDCIPRISRAQVFDGLSSMANIAGYKAVMEASNYFGRFFGGAITA
AGRVQPAKVLVIGAGVAGLSAIGTAKNIGAIVRAFDTRSVTKEQVESLGGEFLEVKIK--
-

---CKAMNRNLMSVIFRWVLVHQVWEKVKQ*ksqvltlksmlikqvk*lptlkifslyqv
mvwllvkvniqlqrwlkl*lkkvtmlnlvfiq*qvdyqvt*ifa*vkqrfhmtlfskwkk
liqk*ki*i*qs*lvqmipsivhqlkiqiqlslvcqllkfgkqnivsl*nvh*qmlvmpi
fkiqyfinqilqcy*vmlqtlvkngk*nrini
Translated Amino Acid sequence (All Frames) 
Frame A:
CWPTGEAGAKITTAANLFKKTDILLKVRGPQFNTNLGKHEVEMMKEGATVISFLSPAQNA
ETLKLLSQKKANAIAVDCIPRISRAQVFDGLSSMANIAGYKAVMEASNYFGRFFGGAITA
AGRVQPAKVLVIGAGVAGLSAIGTAKNIGAIVRAFDTRSVTKEQVESLGGEFLEVKIK--
-

---v*sye*ksyecyf*vgvgtssmgkgeamkitgthteinvdqasemitnsknilivpg
ygmvvsksqypvaemvktliekghnvkfgihpvagrlpghlniclseakvpydivfemee
inpemkdidlaivigandtvnsasvedpnsiiagmpvievwkakhcivmkrsltnagyad
iqnpvfykpntsmllgdatntckewqik*nkhy

Frame B:
vgllvkpvqklqlqliysrkpiyy*rlevhnliqtwvnmklk**kkvlq*lafyhqhkmq
kl*syyhkrklmplqlivyqelvehrflmvyhqwqilqvikq*wrhptilvdslveplqp
lvefsllkywllvlvllvylllvplkilvlslehsildllpknklnhwvvnf*k*ksk--
-

---CKAMNRNLMSVIFRWVLVHQVWEKVKQ*ksqvltlksmlikqvk*lptlkifslyqv
mvwllvkvniqlqrwlkl*lkkvtmlnlvfiq*qvdyqvt*ifa*vkqrfhmtlfskwkk
liqk*ki*i*qs*lvqmipsivhqlkiqiqlslvcqllkfgkqnivsl*nvh*qmlvmpi
fkiqyfinqilqcy*vmlqtlvkngk*nrini

Frame C:
layw*srcknyncs*fiqenryitkg*rsti*yklg*t*s*nderrcysn*lfitstkcr
nfkvtitkes*chcs*lytkn**stgf*wfiingkycrl*ssdggiqlfw*ilwwshysr
w*ssac*sigywcwccwficywyr*kywcyr*siry*icyqrts*iigw*ifrsenqr--
-

---vkl*ieil*vlflggcwyikygkr*snenhrysh*nqc*ssk*ndyql*kyshctrl
wygc**ksisscrdg*nfn*krsqc*iwyssssr*itrsleyllk*skgsi*hcfrngrn
*srneryrfsnrnwck*yrq*cis*rskfnyrwyasy*slesktlyryetfinkcwlcry
skssil*tkyfnvir*cykhl*rmankie*tl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHM348 (VHM348Q) /CSM/VH/VHM3-B/VHM348Q.Seq.d/                       2272   0.0
VHQ158 (VHQ158Q) /CSM/VH/VHQ1-C/VHQ158Q.Seq.d/                       1189   0.0
VHF148 (VHF148Q) /CSM/VH/VHF1-B/VHF148Q.Seq.d/                       1140   0.0
VHD637 (VHD637Q) /CSM/VH/VHD6-B/VHD637Q.Seq.d/                       1140   0.0
VHN216 (VHN216Q) /CSM/VH/VHN2-A/VHN216Q.Seq.d/                       1138   0.0
VHB345 (VHB345Q) /CSM/VH/VHB3-B/VHB345Q.Seq.d/                       1132   0.0
VHC381 (VHC381Q) /CSM/VH/VHC3-D/VHC381Q.Seq.d/                       1100   0.0
VHG795 (VHG795Q) /CSM/VH/VHG7-D/VHG795Q.Seq.d/                       1051   0.0
VHD608 (VHD608Q) /CSM/VH/VHD6-A/VHD608Q.Seq.d/                       1041   0.0
VHO842 (VHO842Q) /CSM/VH/VHO8-B/VHO842Q.Seq.d/                       1039   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ444165) Dictyostelium discoideum cDNA clone:ddv55p11, 3' ...  1247   0.0    1
(BJ446683) Dictyostelium discoideum cDNA clone:ddv63c15, 3' ...  1132   0.0    2
(BJ444702) Dictyostelium discoideum cDNA clone:ddv57o04, 3' ...  1108   0.0    2
(BJ438750) Dictyostelium discoideum cDNA clone:ddv38i10, 3' ...  1108   0.0    2
(BJ437155) Dictyostelium discoideum cDNA clone:ddv33j11, 3' ...  1108   0.0    2
(BJ437908) Dictyostelium discoideum cDNA clone:ddv35b21, 3' ...  1086   0.0    1
(BJ439744) Dictyostelium discoideum cDNA clone:ddv41o11, 3' ...  1078   0.0    2
(BJ425359) Dictyostelium discoideum cDNA clone:ddv55p11, 5' ...  1063   0.0    1
(BJ440855) Dictyostelium discoideum cDNA clone:ddv44n23, 3' ...  1051   0.0    1
(BJ420138) Dictyostelium discoideum cDNA clone:ddv38i10, 5' ...  1035   0.0    1
dna update 2008.11.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT072456_1(BT072456|pid:none) Salmo salar clone ssal-rgf-526-105...   258   3e-67
BC091271_1(BC091271|pid:none) Rattus norvegicus nicotinamide nuc...   254   3e-66
AK085903_1(AK085903|pid:none) Mus musculus 16 days neonate heart...   254   3e-66
AK159694_1(AK159694|pid:none) Mus musculus osteoclast-like cell ...   254   3e-66
S54876(S54876) NAD(P) transhydrogenase (B-specific) (EC 1.6.1.1)...   254   3e-66
AK088044_1(AK088044|pid:none) Mus musculus 2 days neonate thymus...   254   3e-66
AK040460_1(AK040460|pid:none) Mus musculus 0 day neonate thymus ...   254   3e-66
AK299622_1(AK299622|pid:none) Homo sapiens cDNA FLJ57576 complet...   253   7e-66
(Q13423) RecName: Full=NAD(P) transhydrogenase, mitochondrial;  ...   253   7e-66
Z50101_1(Z50101|pid:none) H.sapiens mRNA for NAD(P) transhydroge...   253   7e-66
protein update 2009. 7.16
PSORT 

 psg: 0.86  gvh: 0.48  alm: 0.30  top: 0.53  tms: 0.07  mit: 0.18  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.08  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 24.0 %: nuclear
	 16.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for VHM348 is end
5' end seq. ID VHM348F
5' end seq. 
>VHM348F.Seq
TGTTGGCCTACTGGTGAAGCCGGTGCAAAAATTACAACTGCAGCTAATTTATTCAAGAAA
ACCGATATATTACTAAAGGTTAGAGGTCCACAATTTAATACAAACTTGGGTAAACATGAA
GTTGAAATGATGAAAGAAGGTGCTACAGTAATTAGCTTTTTATCACCAGCACAAAATGCA
GAAACTTTAAAGTTACTATCACAAAAGAAAGCTAATGCCATTGCAGTTGATTGTATACCA
AGAATTAGTAGAGCACAGGTTTTTGATGGTTTATCATCAATGGCAAATATTGCAGGTTAT
AAAGCAGTGATGGAGGCATCCAACTATTTTGGTAGATTCTTTGGTGGAGCCATTACAGCC
GCTGGTAGAGTTCAGCCTGCTAAAGTATTGGTTATTGGTGCTGGTGTTGCTGGTTTATCT
GCTATTGGTACCGCTAAAAATATTGGTGCTATCGTTAGAGCATTCGATACTAGATCTGTT
ACCAAAGAACAAGTTGAATCATTGGGTGGTGAATTTTTAGAAGTGAAAATCAAAGANNNN
NNNNNN
Length of 5' end seq. 546
3' end seq. ID VHM348Z
3' end seq. 
>VHM348Z.Seq
NNNNNNNNNNGTGTAAAGCTATGAATAGAAATCTTATGAGTGTTATTTTTAGGTGGGTGT
TGGTACATCAAGTATGGGAAAAGGTGAAGCAATGAAAATCACAGGTACTCACACTGAAAT
CAATGTTGATCAAGCAAGTGAAATGATTACCAACTCTAAAAATATTCTCATTGTACCAGG
TTATGGTATGGTTGTTAGTAAAAGTCAATATCCAGTTGCAGAGATGGTTAAAACTTTAAT
TGAAAAAGGTCACAATGTTAAATTTGGTATTCATCCAGTAGCAGGTAGATTACCAGGTCA
CTTGAATATTTGCTTAAGTGAAGCAAAGGTTCCATATGACATTGTTTTCGAAATGGAAGA
AATTAATCCAGAAATGAAAGATATAGATTTAGCAATCGTAATTGGTGCAAATGATACCGT
CAATAGTGCATCAGTTGAAGATCCAAATTCAATTATCGCTGGTATGCCAGTTATTGAAGT
TTGGAAAGCAAAACATTGTATCGTTATGAAACGTTCATTAACAAATGCTGGTTATGCCGA
TATTCAAAATCCAGTATTTTATAAACCAAATACTTCAATGTTATTAGGTGATGCTACAAA
CACTTGTAAAGAATGGCAAATAAAATAGAATAAACATTAT
Length of 3' end seq. 640
Connected seq. ID VHM348P
Connected seq. 
>VHM348P.Seq
TGTTGGCCTACTGGTGAAGCCGGTGCAAAAATTACAACTGCAGCTAATTTATTCAAGAAA
ACCGATATATTACTAAAGGTTAGAGGTCCACAATTTAATACAAACTTGGGTAAACATGAA
GTTGAAATGATGAAAGAAGGTGCTACAGTAATTAGCTTTTTATCACCAGCACAAAATGCA
GAAACTTTAAAGTTACTATCACAAAAGAAAGCTAATGCCATTGCAGTTGATTGTATACCA
AGAATTAGTAGAGCACAGGTTTTTGATGGTTTATCATCAATGGCAAATATTGCAGGTTAT
AAAGCAGTGATGGAGGCATCCAACTATTTTGGTAGATTCTTTGGTGGAGCCATTACAGCC
GCTGGTAGAGTTCAGCCTGCTAAAGTATTGGTTATTGGTGCTGGTGTTGCTGGTTTATCT
GCTATTGGTACCGCTAAAAATATTGGTGCTATCGTTAGAGCATTCGATACTAGATCTGTT
ACCAAAGAACAAGTTGAATCATTGGGTGGTGAATTTTTAGAAGTGAAAATCAAAGA----
------GTGTAAAGCTATGAATAGAAATCTTATGAGTGTTATTTTTAGGTGGGTGTTGGT
ACATCAAGTATGGGAAAAGGTGAAGCAATGAAAATCACAGGTACTCACACTGAAATCAAT
GTTGATCAAGCAAGTGAAATGATTACCAACTCTAAAAATATTCTCATTGTACCAGGTTAT
GGTATGGTTGTTAGTAAAAGTCAATATCCAGTTGCAGAGATGGTTAAAACTTTAATTGAA
AAAGGTCACAATGTTAAATTTGGTATTCATCCAGTAGCAGGTAGATTACCAGGTCACTTG
AATATTTGCTTAAGTGAAGCAAAGGTTCCATATGACATTGTTTTCGAAATGGAAGAAATT
AATCCAGAAATGAAAGATATAGATTTAGCAATCGTAATTGGTGCAAATGATACCGTCAAT
AGTGCATCAGTTGAAGATCCAAATTCAATTATCGCTGGTATGCCAGTTATTGAAGTTTGG
AAAGCAAAACATTGTATCGTTATGAAACGTTCATTAACAAATGCTGGTTATGCCGATATT
CAAAATCCAGTATTTTATAAACCAAATACTTCAATGTTATTAGGTGATGCTACAAACACT
TGTAAAGAATGGCAAATAAAATAGAATAAACATTAT
Length of connected seq. 1166
Full length Seq ID -
Full length Seq. -
Length of full length seq. -