VHM219
Library VH
(Link to library)
Clone ID VHM219
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15950-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHM219 (VHM219Q) /CSM/VH/VHM2-A/VHM219Q.Seq.d/
TAAAAAATGGGTAAAGGAAGTGGAGCTCCTTTAAAGGAGAAAGTTTATCCATCTGTTATG
TATGGAAATATTAAACCAATTAGAAAACAACCAAAATCATTACCAAAAGAATTAACTATT
GATCAAATTTTACAATCTCTTCCAAAAGAAGTTTTTGAAACAAGTAATTTTAAATCAGCA
TGTTCACTTTTAATAACAATCTTATTCATTGGTTTAAGTGCAACATTCATTACTCTCATG
CCATCTTACTTAACCCCAATTGGTTGGATGTTAATGGGTGCCTCAGTTACTGGTTTAATG
GTAATTGGTAATGATTGTATTCATAAAACTTTTTCAAAGAATCCATTAGTTAATTCAATT
ATTGGAACAATTGTAATGTTACCATTGTTATATCCATTCCAATCTTACAAGATTTCAGAA
AAGAATAATGCAGAAAAGAAATCGACAGCTGTTTTAAATGGTGAACAATTCAAGATTAAT
GCACATACCACAACCGAAAGTACAAATCCAATTAGACAATGGGCAACTGGTAAATTCTTT
TGGATTTTATCAATTATTAATTGGTCTGAAAATTATTTCTCAACTAAAAATTTATCAGAT
AAAAAAGATAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
*KMGKGSGAPLKEKVYPSVMYGNIKPIRKQPKSLPKELTIDQILQSLPKEVFETSNFKSA
CSLLITILFIGLSATFITLMPSYLTPIGWMLMGASVTGLMVIGNDCIHKTFSKNPLVNSI
IGTIVMLPLLYPFQSYKISEKNNAEKKSTAVLNGEQFKINAHTTTESTNPIRQWATGKFF
WILSIINWSENYFSTKNLSDKKD---


Translated Amino Acid sequence (All Frames)
Frame A:
*KMGKGSGAPLKEKVYPSVMYGNIKPIRKQPKSLPKELTIDQILQSLPKEVFETSNFKSA
CSLLITILFIGLSATFITLMPSYLTPIGWMLMGASVTGLMVIGNDCIHKTFSKNPLVNSI
IGTIVMLPLLYPFQSYKISEKNNAEKKSTAVLNGEQFKINAHTTTESTNPIRQWATGKFF
WILSIINWSENYFSTKNLSDKKD---


Frame B:
kkwvkevell*rrkfihllcmeilnqlennqnhyqkn*llikfynlfqkkflkqvilnqh
vhf**qsyslv*vqhsllschlt*pqlvgc*wvpqllv*w*lvmivfiklfqrih*liql
leql*cyhcyihsnltrfqkrimqkrnrqlf*mvnnsrlmhipqpkvqiqldngqlvnsf
gfyqlliglkiisqlkiyqikk---


Frame C:
kng*rkwssfkgeslsicyvwky*tn*kttkiitkriny*snftisskrsf*nk*f*ism
ftfnnnlihwfkcnihyshaillnpnwldvngclsywfngnw**lys*nffkesis*fny
wnncnvtivisipilqdfrke*crkeidscfkw*tiqd*ctyhnrkyksn*tmgnw*ill
dfiny*lv*klfln*kfir*kr---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP282 (VHP282Q) /CSM/VH/VHP2-D/VHP282Q.Seq.d/ 1209 0.0
VHM219 (VHM219Q) /CSM/VH/VHM2-A/VHM219Q.Seq.d/ 1209 0.0
VHN236 (VHN236Q) /CSM/VH/VHN2-B/VHN236Q.Seq.d/ 1207 0.0
VHC577 (VHC577Q) /CSM/VH/VHC5-D/VHC577Q.Seq.d/ 1120 0.0
VHE192 (VHE192Q) /CSM/VH/VHE1-D/VHE192Q.Seq.d/ 1011 0.0
VHD588 (VHD588Q) /CSM/VH/VHD5-D/VHD588Q.Seq.d/ 999 0.0
VHD425 (VHD425Q) /CSM/VH/VHD4-B/VHD425Q.Seq.d/ 997 0.0
VHC288 (VHC288Q) /CSM/VH/VHC2-D/VHC288Q.Seq.d/ 995 0.0
VHQ401 (VHQ401Q) /CSM/VH/VHQ4-A/VHQ401Q.Seq.d/ 993 0.0
VHA229 (VHA229Q) /CSM/VH/VHA2-B/VHA229Q.Seq.d/ 977 0.0

own update 2003. 1. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ427237) Dictyostelium discoideum cDNA clone:ddv61c22, 5' ... 1209 0.0 1
(BJ425235) Dictyostelium discoideum cDNA clone:ddv55e06, 5' ... 1209 0.0 1
(BJ425862) Dictyostelium discoideum cDNA clone:ddv57g10, 5' ... 1207 0.0 1
(BJ419679) Dictyostelium discoideum cDNA clone:ddv36i19, 5' ... 1047 0.0 2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 626 0.0 2
(BJ420605) Dictyostelium discoideum cDNA clone:ddv39g23, 5' ... 1011 0.0 1
(BJ420330) Dictyostelium discoideum cDNA clone:ddv38o21, 5' ... 999 0.0 1
(BJ419796) Dictyostelium discoideum cDNA clone:ddv37b08, 5' ... 997 0.0 1
(BJ419386) Dictyostelium discoideum cDNA clone:ddv35o22, 5' ... 995 0.0 1
(BJ427611) Dictyostelium discoideum cDNA clone:ddv63b02, 5' ... 993 0.0 1
dna update 2008.11.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116984_117(AC116984|pid:none) Dictyostelium discoideum chromos... 405 e-112
AP004702_29(AP004702|pid:none) Oryza sativa Japonica Group genom... 109 5e-23
U09503_1(U09503|pid:none) Arabidopsis thaliana Columbia chloropl... 108 9e-23
AF229392_1(AF229392|pid:none) Arabidopsis thaliana cultivar Colu... 106 5e-22
AY642535_1(AY642535|pid:none) Brassica napus omega-6 desaturase ... 105 1e-21
(P48629) RecName: Full=Omega-6 fatty acid desaturase, chloroplas... 105 1e-21
(P48627) RecName: Full=Omega-6 fatty acid desaturase, chloroplas... 105 1e-21
DQ904566_1(DQ904566|pid:none) Descurainia sophia omega-6 fatty a... 105 1e-21
AF229391_1(AF229391|pid:none) Brassica napus cultivar Stellar om... 105 1e-21
AF229389_1(AF229389|pid:none) Brassica oleracea cultivar Rapid C... 105 1e-21
protein update 2009. 7.16
PSORT

psg: 0.66 gvh: 0.28 alm: 0.22 top: 0.63 tms: 0.07 mit: 0.20 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.80 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.07 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: cytoplasmic
24.0 %: mitochondrial
24.0 %: nuclear
8.0 %: plasma membrane
8.0 %: endoplasmic reticulum
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for VHM219 is cyt

5' end seq. ID VHM219F
5' end seq.
>VHM219F.Seq
TAAAAAATGGGTAAAGGAAGTGGAGCTCCTTTAAAGGAGAAAGTTTATCCATCTGTTATG
TATGGAAATATTAAACCAATTAGAAAACAACCAAAATCATTACCAAAAGAATTAACTATT
GATCAAATTTTACAATCTCTTCCAAAAGAAGTTTTTGAAACAAGTAATTTTAAATCAGCA
TGTTCACTTTTAATAACAATCTTATTCATTGGTTTAAGTGCAACATTCATTACTCTCATG
CCATCTTACTTAACCCCAATTGGTTGGATGTTAATGGGTGCCTCAGTTACTGGTTTAATG
GTAATTGGTAATGATTGTATTCATAAAACTTTTTCAAAGAATCCATTAGTTAATTCAATT
ATTGGAACAATTGTAATGTTACCATTGTTATATCCATTCCAATCTTACAAGATTTCAGAA
AAGAATAATGCAGAAAAGAAATCGACAGCTGTTTTAAATGGTGAACAATTCAAGATTAAT
GCACATACCACAACCGAAAGTACAAATCCAATTAGACAATGGGCAACTGGTAAATTCTTT
TGGATTTTATCAATTATTAATTGGTCTGAAAATTATTTCTCAACTAAAAATTTATCAGAT
AAAAAAGATANNNNNNNNNN
Length of 5' end seq. 620
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -