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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHM213
Library VH
(Link to library)
Clone ID VHM213
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16299-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHM213 (VHM213Q) /CSM/VH/VHM2-A/VHM213Q.Seq.d/
XXXXXXXXXXTCGTGTATCATGTATTGGTCATCCCAACTCGTATTGGTTCAGTTACAATT
GTCGGTGCAGTCTCTCCCCCCAGGTGGAGATTTTGCTGATCCAGTCACTGCTGCCACTTT
AGGTATCGTCCAAGTATTCTGGGGTTTAGATAAAAAATTAGCACAACGTAAACATTTCCC
ATCCATCAATTGGTTAATTTCTTTCTCCAAATATATGCAAGCTCTTGATACTCATTATGA
TCAAATGGATCCAGAATTCGTTCCACTCCGTACCAGAGCCAAGGAAATTCTTCAAATGGA
AGAAGATCTCTCTGAAATCGTCCAATTGGTCGGTCAAGATTCTTTAGGTGAATCTGAAAA
GATTACCATTGAAGTCGCTCGTATTATTCGTGATGATTTCCTTCAACAAAATGGTTTCTC
TCCATACGATAAATGTTGTCCATTCTTCAAGACCGTTTGGATGTTAAAGAATATGATGAC
TTTCTACAATTTAGCACAAAAAGCTGTTGAATCAAGTACCGCTGATAATAAAGTTACTTG
GAATCAAATTAAAAATGAATTAAAAGAAATCATTCACAGAATTACTTCAATGAAATTCCA
AGATCCAACTGACGGTGAACAAACTTTAACTGCTCATTTCTCAACTCTCAATGAAGATAT
CATTACTGCTTTCAGAAACTTTAGTGATTTAGTTTAAAAT
sequence update 2002. 9.10
Translated Amino Acid sequence 
---CIMYWSSQLVLVQLQLSVQSLPPGGDFADPVTAATLGIVQVFWGLDKKLAQRKHFPS
INWLISFSKYMQALDTHYDQMDPEFVPLRTRAKEILQMEEDLSEIVQLVGQDSLGESEKI
TIEVARIIRDDFLQQNGFSPYDKCCPFFKTVWMLKNMMTFYNLAQKAVESSTADNKVTWN
QIKNELKEIIHRITSMKFQDPTDGEQTLTAHFSTLNEDIITAFRNFSDLV*n
Translated Amino Acid sequence (All Frames) 
Frame A:
---rvscighpnsywfsyncrcslspqveilliqsllpl*vsskysgv*ikn*hnvnish
psig*flspnickllilimikwiqnsfhsvpeprkffkwkkislkssnwsvkil*vnlkr
lplkslvlfvmisfnkmvslhtinvvhssrpfgc*ri**lsti*hkkllnqvpliikllg
iklkmn*kksftellq*nskiqltvnkl*llisqlsmkislllsetlvi*fk


Frame B:
---vyhvlviptrigsvtivgavspprwrfc*sshcchfryrpsilgfr*kistt*tfpi
hqlvnfflqiyass*ysl*sngsrirstpyqsqgnssngrrsl*nrpigrsrffr*i*kd
yh*srsyys**fpstkwflsir*mlsilqdrldvkeyddflqfstksc*ikyr***syle
sn*k*ikrnhsqnyfneiprsn*r*tnfncsflnsq*ryhycfqkl**fslk


Frame C:
---CIMYWSSQLVLVQLQLSVQSLPPGGDFADPVTAATLGIVQVFWGLDKKLAQRKHFPS
INWLISFSKYMQALDTHYDQMDPEFVPLRTRAKEILQMEEDLSEIVQLVGQDSLGESEKI
TIEVARIIRDDFLQQNGFSPYDKCCPFFKTVWMLKNMMTFYNLAQKAVESSTADNKVTWN
QIKNELKEIIHRITSMKFQDPTDGEQTLTAHFSTLNEDIITAFRNFSDLV*n
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHM213 (VHM213Q) /CSM/VH/VHM2-A/VHM213Q.Seq.d/                       1368   0.0
VHL630 (VHL630Q) /CSM/VH/VHL6-B/VHL630Q.Seq.d/                       1336   0.0
VFC742 (VFC742Q) /CSM/VF/VFC7-B/VFC742Q.Seq.d/                       1336   0.0
VFC688 (VFC688Q) /CSM/VF/VFC6-D/VFC688Q.Seq.d/                       1336   0.0
VFC543 (VFC543Q) /CSM/VF/VFC5-B/VFC543Q.Seq.d/                       1334   0.0
VHP385 (VHP385Q) /CSM/VH/VHP3-D/VHP385Q.Seq.d/                       1330   0.0
VHH516 (VHH516Q) /CSM/VH/VHH5-A/VHH516Q.Seq.d/                       1330   0.0
VHD171 (VHD171Q) /CSM/VH/VHD1-C/VHD171Q.Seq.d/                       1330   0.0
SLE162 (SLE162Q) /CSM/SL/SLE1-C/SLE162Q.Seq.d/                       1324   0.0
VHJ289 (VHJ289Q) /CSM/VH/VHJ2-D/VHJ289Q.Seq.d/                       1322   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U49169|U49169.1 Dictyostelium discoideum V-ATPase A subunit (vatA) mRNA, complete cds.  1237   0.0    3
BI772943|BI772943.1 kq08f06.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:Q9XW92 Q9XW92 Y49A3A.2 PROTEIN ;, mRNA sequence.    94   2e-33  4
BI073337|BI073337.1 kt29f11.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q9XW92 Q9XW92 Y49A3A.2 PROTEIN ;, mRNA sequence.    94   2e-24  4
BI773050|BI773050.1 kq33c01.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:Q9XW92 Q9XW92 Y49A3A.2 PROTEIN ;, mRNA sequence.    94   5e-22  2
BI772898|BI772898.1 kp97e10.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:Q9XW92 Q9XW92 Y49A3A.2 PROTEIN ;, mRNA sequence.    80   5e-19  3
BI703941|BI703941.1 kt23d10.y3 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q9XW92 Q9XW92 Y49A3A.2 PROTEIN ;, mRNA sequence.    86   2e-17  2
BI501052|BI501052.1 kx27d07.y1 Parastrongyloides trichosuri PA pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:Q9XW92 Q9XW92 Y49A3A.2 PROTEIN ;, mRNA sequence.    66   9e-17  3
AB093509|AB093509.1 Saccharomyces exiguus VMA1-1 gene for vacuolar membrane ATPase subunit a precursor 1, partial cds, strain:IFO1128.    74   1e-10  3
AB093510|AB093510.1 Saccharomyces exiguus VMA1-2 gene for vacuolar membrane ATPase subunit a precursor 2, partial cds, strain:IFO1128.    74   9e-10  2
AB093511|AB093511.1 Saccharomyces unisporus VMA1 gene for vacuolar membrane ATPase subunit a precursor, partial cds, strain:IFO0316.    74   3e-09  1
dna update 2004. 3.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54647) RecName: Full=V-type proton ATPase catalytic subunit A;...   420   e-120
(P38607) Vacuolar ATP synthase catalytic subunit A, osteoclast i...   288   1e-78
A56807(A56807) H+-transporting two-sector ATPase (EC 3.6.3.14), ...   285   3e-78
(Q90647) RecName: Full=V-type proton ATPase catalytic subunit A;...   283   1e-77
I50715(I50715) A2 isoform of vacuolar H+-ATPase subunit A - chic...   283   1e-77
AX407287_1(AX407287|pid:none) Sequence 58 from Patent WO0226984.      284   2e-77
(P31404) RecName: Full=V-type proton ATPase catalytic subunit A;...   284   2e-77
M80430_1(M80430|pid:none) Bovine vacuolar H+-ATPase A subunit mR...   284   2e-77
BC105145_1(BC105145|pid:none) Bos taurus ATPase, H+ transporting...   284   2e-77
(P31400) RecName: Full=V-type proton ATPase catalytic subunit A;...   283   4e-77
protein update 2009. 7.16
PSORT 

 psg: 0.86  gvh: 0.63  alm: 0.41  top: 0.33  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: extracellular, including cell wall
	 24.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VHM213 is exc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHM213Z
3' end seq. 
>VHM213Z.Seq
NNNNNNNNNNTCGTGTATCATGTATTGGTCATCCCAACTCGTATTGGTTCAGTTACAATT
GTCGGTGCAGTCTCTCCCCCCAGGTGGAGATTTTGCTGATCCAGTCACTGCTGCCACTTT
AGGTATCGTCCAAGTATTCTGGGGTTTAGATAAAAAATTAGCACAACGTAAACATTTCCC
ATCCATCAATTGGTTAATTTCTTTCTCCAAATATATGCAAGCTCTTGATACTCATTATGA
TCAAATGGATCCAGAATTCGTTCCACTCCGTACCAGAGCCAAGGAAATTCTTCAAATGGA
AGAAGATCTCTCTGAAATCGTCCAATTGGTCGGTCAAGATTCTTTAGGTGAATCTGAAAA
GATTACCATTGAAGTCGCTCGTATTATTCGTGATGATTTCCTTCAACAAAATGGTTTCTC
TCCATACGATAAATGTTGTCCATTCTTCAAGACCGTTTGGATGTTAAAGAATATGATGAC
TTTCTACAATTTAGCACAAAAAGCTGTTGAATCAAGTACCGCTGATAATAAAGTTACTTG
GAATCAAATTAAAAATGAATTAAAAGAAATCATTCACAGAATTACTTCAATGAAATTCCA
AGATCCAACTGACGGTGAACAAACTTTAACTGCTCATTTCTCAACTCTCAATGAAGATAT
CATTACTGCTTTCAGAAACTTTAGTGATTTAGTTTAAAAT
Length of 3' end seq. 700
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -