AFO550 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

AFO550
Library	AF (Link to library)
Clone ID	AFO550 (Link to dictyBase)
Atlas ID	-
NBRP ID	G01482
dictyBase ID	DDB0231540
Link to Contig	Contig-U13840-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/AF/AFO5-C/AFO550Q.Seq.d/
Representative seq. ID	AFO550P (Link to Original site)
Representative DNA sequence	>AFO550 (AFO550Q) /CSM/AF/AFO5-C/AFO550Q.Seq.d/ ACTGTTGGCCTACTGGAAATATCATAAAACCCAAATATTAAAATGAGCGATATTCAATAC TCAAAATACGTTTCAAATCAATATGGTTTTGAACTTGAATATCCATCAAATTGGATAGTA AAGGAACATTCAGCAATGTTTTTAGCATCTTTCATGGAATCAAACGATAAAAACTCACCA AGTCTTAATGTTACAATTCAAAATTTAGAAGGATCAACTGGATCAGATCAATCTATGACA CCAAAACAATTATTAGATATTTCAATTCAACAAATTCAACAAATTAATGCAACCCGTATT GAAACAGGTTCATGTAAAATCGGTTCAAACAGTGCAGACTTTTTATCATATTATGCACCA GAACAAAAAGTAAGAAATAAACAATGTTTCTTCATAAAGAATAACAATGTATTCATCATT TCATATACCTCATCAAATGGTGAATTCACAAAGAATTTACCAGCATTGGAACATTGTTGT AAAACCTTTAAGAATTTCGAAGCAAAAGGATTTAAATACACTCAAATGGAAGCATTCACA TCAAGTATTAAAAGCTCATCATCAGCAGCAACCTATTATTACCAATATTGGGTACCAAAG ACATGGAAATCAAAAAAAGAATCTAAACATCAAGAATATACAGACTCTTXXXXXXXXXXC AAGTTAAAGAAACTAAAAAAATCAACTACCATCACTAATAATAAACATCATTTCCACTAC GGATGTAACCATTGAAGATATTCATCTCTCATTGGTCTTTACATGTTTAGAGAATGAATC AAACTCTTGGGAACCACTATTCGAACGTTTTATAGCCGATTTAAAGATTGGCACATCATT TTTAGAATCACCAGTTTACAATCGTTTCTATAATTTCATCTTCAAATTCTACGTTCACAT TCCAAAATCATTCGCAATGGACCCAAGATCATCCAATTTCACCTCTTTAATTTTCCTCGA TCAAGATTATCCAATGTATCCAATATTTAATATCACATTGGAGGACTTGGGTGCTCCAAT CAAATTGGAGCAATATAAAGATCTCCTCTTGTCTTTCTATGAAAACTCTGTCGAAAATGC ACGTATCATCTCTCAAGATCCTGCTCGTATCGATAATTATCGTGCTCTTCGTATCAATAT GGATGGTCGTGATCCTGAAATCGATAAAGATTGTAAAGTCATCATTCAATGTGCTGTCGT TCAACGTACAAAAGGTTTATTATTAAATCTTCGTCTTCCAAAAAATATTTTCGACACTGC TTATAAAAAATACTTTTATATATTCCCAAGTTTAGTATTTTATAATTAAAAATAAAATAA AAATAAAATAAAAATAAAAATAAAAAATAATCATTTAAAATAATAATTATAATAATAA
sequence update	2001. 6. 1
Translated Amino Acid sequence	tvglleisNPNIKMSDIQYSKYVSNQYGFELEYPSNWIVKEHSAMFLASFMESNDKNSP SLNVTIQNLEGSTGSDQSMTPKQLLDISIQQIQQINATRIETGSCKIGSNSADFLSYYAP EQKVRNKQCFFIKNNNVFIISYTSSNGEFTKNLPALEHCCKTFKNFEAKGFKYTQMEAFT SSIKSSSSAATYYYQYWVPKTWKSKKESKHQEYTDS--- ---KLKKLKKSTTITNNKHHFHYGCNHryssliglymfreikllgttirtfysrfkdw hiifritslqsflfhlqilrshskiirngpkiiqfhlfnfprsrlsnvsniyhigglg csnqigairsplvflklcrkctyhlsrscsyrlscssyqygwssnrrlshhsm ccrstykrfiiksssskkyfrhclkillyipkfsillkikknknknkk*sfkiiii ii
Translated Amino Acid sequence (All Frames)	Frame A: tvglleisNPNIKMSDIQYSKYVSNQYGFELEYPSNWIVKEHSAMFLASFMESNDKNSP SLNVTIQNLEGSTGSDQSMTPKQLLDISIQQIQQINATRIETGSCKIGSNSADFLSYYAP EQKVRNKQCFFIKNNNVFIISYTSSNGEFTKNLPALEHCCKTFKNFEAKGFKYTQMEAFT SSIKSSSSAATYYYQYWVPKTWKSKKESKHQEYTDS--- ---qvketkkinyhh*tsfplrmplkifishwslhvrmnqtlgnhysnvlpirl ahhfnhqftivsiisssnstftfqnhsqwtqdhpisplfssikiiqciqylishwrtw vlqsnwsnikissclsmktlskmhvsslkillvsiiivlfvsiwmvvilksikivkssfn vlsfnvqkvyyifvfqkifstllikntfiysqvyfiiknkikikkkkiiinnny nn Frame B: llaywkyhktqilkaifntqntfqinmvlnlnihqig*rniqqcfhlswnqtikthq vlmlqfkikdqldqinlhqnnyifqfnkfnklmqpvlkqvhvksvqtvqtfyhimhq nkkeinnvssritmyssfhiphqmvnsqriyqhwnivvkplriskqkdlntlkwkhsh qvlkahhqqqpiitnigyqrhgnqkknlnikniqtl--- ---KLKKLKKSTTITNNKHHFHYGCNHryssliglymfreikllgttirtfysrfkdw hiifritslqsflfhlqilrshskiirngpkiiqfhlfnfprsrlsnvsniyhigglg csnqigairsplvflklcrkctyhlsrscsyrlscssyqygwssnrrlshhsm ccrstykrfiiksssskkyfrhclkillyipkfsillkikknknknkksfkiiii ii Frame C: cwptgniikpkynerysilkirfksiwftisikldskgtfsnvfsifhgikrkltk scynskfrrinwirsiydtktiiryfnstnstncnpynrfmnrfkqcrlfiilctr tkskktmflhkeqcihhfiylikwihkeftsigtllnlefrskriihsngsihi kykliissnlllpilgtkdmeikkritsriyrl--- ---srnknqlpsliiniisttdvtiedihlslvftclenesnsweplferfiadlkig tsflespvynrfynfifkfyvhipksfamdprssnftslifldqdypmypifnitledlg apikleqykdlllsfyensvenariisqdparidnyralrinmdgrdpeidkdckviiqc avvqrtkglllnlrlpknifdtaykkyfyifpslvfynknknkikikiknnhlkl **
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value AFO550 (AFO550Q) /CSM/AF/AFO5-C/AFO550Q.Seq.d/ 2446 0.0 VSD889 (VSD889Q) /CSM/VS/VSD8-D/VSD889Q.Seq.d/ 1223 0.0 VFI524 (VFI524Q) /CSM/VF/VFI5-A/VFI524Q.Seq.d/ 1217 0.0 VFK321 (VFK321Q) /CSM/VF/VFK3-A/VFK321Q.Seq.d/ 1215 0.0 VFK269 (VFK269Q) /CSM/VF/VFK2-C/VFK269Q.Seq.d/ 1201 0.0 VFD288 (VFD288Q) /CSM/VF/VFD2-D/VFD288Q.Seq.d/ 1201 0.0 VFA865 (VFA865Q) /CSM/VF/VFA8-C/VFA865Q.Seq.d/ 1199 0.0 VFM127 (VFM127Q) /CSM/VF/VFM1-B/VFM127Q.Seq.d/ 1181 0.0 VFB458 (VFB458Q) /CSM/VF/VFB4-C/VFB458Q.Seq.d/ 1164 0.0 CHC532 (CHC532Q) /CSM/CH/CHC5-B/CHC532Q.Seq.d/ 1162 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC128846\|AC128846.3 Rattus norvegicus clone CH230-500I12, WORKING DRAFT SEQUENCE, 2 unordered pieces. 50 0.036 2 AC137429\|AC137429.1 Rattus norvegicus clone CH230-unknown, * SEQUENCING IN PROGRESS , 6 unordered pieces. 50 0.074 1 BU715947\|BU715947.1 SJM2AJC04 SJM Schistosoma japonicum cDNA, mRNA sequence. 30 0.39 4 AC094174\|AC094174.7 Rattus norvegicus clone CH230-2M9, SEQUENCING IN PROGRESS *, 4 unordered pieces. 40 0.63 2 AZ166366\|AZ166366.1 SP_0088_A1_D01_T7A Strongylocentrotus purpuratus, purple sea urchin , sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=88 Col=1 Row=G, DNA sequence. 32 0.66 3 AZ528750\|AZ528750.1 ENTCQ35TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 44 0.67 2 AC115577\|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 44 0.78 11 AR347477\|AR347477.1 Sequence 2088 from patent US 6583275. 36 0.86 3 BE581924\|BE581924.1 kq56d12.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to WP:F01F1.12 CE01225 FRUCTOSE-BIPHOSPHATE ALDOLASE ;, mRNA sequence. 46 1.2 1 AC141749\|AC141749.1 Apis mellifera clone CH224-59E23, WORKING DRAFT SEQUENCE, 14 unordered pieces. 46 1.2 1
dna update	2003. 9.16
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value CP001251_1578(CP001251\|pid:none) Dictyoglomus turgidum DSM 6724,... 47 0.001 AL021504_1(AL021504\|pid:none) Caenorhabditis elegans YAC Y61B8B,... 39 0.54 BT056028_1(BT056028\|pid:none) Zea mays full-length cDNA clone ZM... 36 2.7 EU962844_1(EU962844\|pid:none) Zea mays clone 245965 unknown mRNA. 36 2.7 CP000117_4740(CP000117\|pid:none) Anabaena variabilis ATCC 29413,... 36 3.5 CP001011_1453(CP001011\|pid:none) Xylella fastidiosa M23, complet... 35 6.0 CP001071_1263(CP001071\|pid:none) Akkermansia muciniphila ATCC BA... 35 7.9
protein update	2009. 4.26
PSORT	psg: 0.68 gvh: 0.41 alm: 0.51 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00 nuc: 0.06 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 40.0 %: nuclear 32.0 %: cytoplasmic 20.0 %: mitochondrial 4.0 %: cytoskeletal 4.0 %: Golgi >> prediction for AFO550 is nuc
5' end seq. ID	AFO550F
5' end seq.	>AFO550F.Seq ACTGTTGGCCTACTGGAAATATCATAAAACCCAAATATTAAAATGAGCGATATTCAATAC TCAAAATACGTTTCAAATCAATATGGTTTTGAACTTGAATATCCATCAAATTGGATAGTA AAGGAACATTCAGCAATGTTTTTAGCATCTTTCATGGAATCAAACGATAAAAACTCACCA AGTCTTAATGTTACAATTCAAAATTTAGAAGGATCAACTGGATCAGATCAATCTATGACA CCAAAACAATTATTAGATATTTCAATTCAACAAATTCAACAAATTAATGCAACCCGTATT GAAACAGGTTCATGTAAAATCGGTTCAAACAGTGCAGACTTTTTATCATATTATGCACCA GAACAAAAAGTAAGAAATAAACAATGTTTCTTCATAAAGAATAACAATGTATTCATCATT TCATATACCTCATCAAATGGTGAATTCACAAAGAATTTACCAGCATTGGAACATTGTTGT AAAACCTTTAAGAATTTCGAAGCAAAAGGATTTAAATACACTCAAATGGAAGCATTCACA TCAAGTATTAAAAGCTCATCATCAGCAGCAACCTATTATTACCAATATTGGGTACCAAAG ACATGGAAATCAAAAAAAGAATCTAAACATCAAGAATATACAGACTCTT----------
Length of 5' end seq.	649
3' end seq. ID	AFO550Z
3' end seq.	>AFO550Z.Seq ----------CAAGTTAAAGAAACTAAAAAAATCAACTACCATCACTAATAATAAACATC ATTTCCACTACGGATGTAACCATTGAAGATATTCATCTCTCATTGGTCTTTACATGTTTA GAGAATGAATCAAACTCTTGGGAACCACTATTCGAACGTTTTATAGCCGATTTAAAGATT GGCACATCATTTTTAGAATCACCAGTTTACAATCGTTTCTATAATTTCATCTTCAAATTC TACGTTCACATTCCAAAATCATTCGCAATGGACCCAAGATCATCCAATTTCACCTCTTTA ATTTTCCTCGATCAAGATTATCCAATGTATCCAATATTTAATATCACATTGGAGGACTTG GGTGCTCCAATCAAATTGGAGCAATATAAAGATCTCCTCTTGTCTTTCTATGAAAACTCT GTCGAAAATGCACGTATCATCTCTCAAGATCCTGCTCGTATCGATAATTATCGTGCTCTT CGTATCAATATGGATGGTCGTGATCCTGAAATCGATAAAGATTGTAAAGTCATCATTCAA TGTGCTGTCGTTCAACGTACAAAAGGTTTATTATTAAATCTTCGTCTTCCAAAAAATATT TTCGACACTGCTTATAAAAAATACTTTTATATATTCCCAAGTTTAGTATTTTATAATTAA AAATAAAATAAAAATAAAATAAAAATAAAAATAAAAAATAATCATTTAAAATAATAATTA TAATAATAA
Length of 3' end seq.	719
Connected seq. ID	AFO550P
Connected seq.	>AFO550P.Seq ACTGTTGGCCTACTGGAAATATCATAAAACCCAAATATTAAAATGAGCGATATTCAATAC TCAAAATACGTTTCAAATCAATATGGTTTTGAACTTGAATATCCATCAAATTGGATAGTA AAGGAACATTCAGCAATGTTTTTAGCATCTTTCATGGAATCAAACGATAAAAACTCACCA AGTCTTAATGTTACAATTCAAAATTTAGAAGGATCAACTGGATCAGATCAATCTATGACA CCAAAACAATTATTAGATATTTCAATTCAACAAATTCAACAAATTAATGCAACCCGTATT GAAACAGGTTCATGTAAAATCGGTTCAAACAGTGCAGACTTTTTATCATATTATGCACCA GAACAAAAAGTAAGAAATAAACAATGTTTCTTCATAAAGAATAACAATGTATTCATCATT TCATATACCTCATCAAATGGTGAATTCACAAAGAATTTACCAGCATTGGAACATTGTTGT AAAACCTTTAAGAATTTCGAAGCAAAAGGATTTAAATACACTCAAATGGAAGCATTCACA TCAAGTATTAAAAGCTCATCATCAGCAGCAACCTATTATTACCAATATTGGGTACCAAAG ACATGGAAATCAAAAAAAGAATCTAAACATCAAGAATATACAGACTCTT----------C AAGTTAAAGAAACTAAAAAAATCAACTACCATCACTAATAATAAACATCATTTCCACTAC GGATGTAACCATTGAAGATATTCATCTCTCATTGGTCTTTACATGTTTAGAGAATGAATC AAACTCTTGGGAACCACTATTCGAACGTTTTATAGCCGATTTAAAGATTGGCACATCATT TTTAGAATCACCAGTTTACAATCGTTTCTATAATTTCATCTTCAAATTCTACGTTCACAT TCCAAAATCATTCGCAATGGACCCAAGATCATCCAATTTCACCTCTTTAATTTTCCTCGA TCAAGATTATCCAATGTATCCAATATTTAATATCACATTGGAGGACTTGGGTGCTCCAAT CAAATTGGAGCAATATAAAGATCTCCTCTTGTCTTTCTATGAAAACTCTGTCGAAAATGC ACGTATCATCTCTCAAGATCCTGCTCGTATCGATAATTATCGTGCTCTTCGTATCAATAT GGATGGTCGTGATCCTGAAATCGATAAAGATTGTAAAGTCATCATTCAATGTGCTGTCGT TCAACGTACAAAAGGTTTATTATTAAATCTTCGTCTTCCAAAAAATATTTTCGACACTGC TTATAAAAAATACTTTTATATATTCCCAAGTTTAGTATTTTATAATTAAAAATAAAATAA AAATAAAATAAAAATAAAAATAAAAAATAATCATTTAAAATAATAATTATAATAATAA
Length of connected seq.	1368
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas