>VHM207 (VHM207Q) /CSM/VH/VHM2-A/VHM207Q.Seq.d/
XXXXXXXXXXATACATTCAGATTCAATCAANCTTTAAAAAATAATACATGTACAATAATT
TATACCGTTGAGGAGATTAAATCAAATGAAAAGAGTTTTACATTTGGAATGGCTTCATTC
ACACTTAAAAAAGGTGCGATTAAATTATCAGTTTTAATTAAAGATTACCAATATCAAAGT
ACATTGAATACATTGCAATTAGTATTCTACTCAACATCTGGAAATGACGTTGAAACTGAT
TGTAATCAACAAGAATCTTTAACTGATACAACCAATGTTGATAATCAACAATTATCAAGT
TATATTCAAATTACTAAAAATTCTAAAAAGTTAGTTGGTCGTTTCATTAATCAAGTGATT
GCAGACTCAAGATCAACTTTTATGTCAAGTACTATTATTAAAAATGATGATTCATCAATT
ACACTTGGTCTAAATCTTCCACATTGCAATGAATGTTTAATTGATCCTGATTTTTCAGTA
TTGGTTACTGATGATTTCCAAGATTCATGTGGTAAATCAACTAGAAATAAATGGGTAGTT
CCTGTTGCCGTTGTAATACCAGTTGTTACTATTGCTGCCATATAGTAATAGTTTCAATTT
TATATATAA

---TFRFNQXLKNNTCTIIYTVEEIKSNEKSFTFGMASFTLKKGAIKLSVLIKDYQYQST
LNTLQLVFYSTSGNDVETDCNQQESLTDTTNVDNQQLSSYIQITKNSKKLVGRFINQVIA
DSRSTFMSSTIIKNDDSSITLGLNLPHCNECLIDPDFSVLVTDDFQDSCGKSTRNKWVVP
VAVVIPVVTIAAI***fqfyi*

Frame A:
---yiqiqsxfkk*ymynnlyr*gd*ik*kefyiwngfiht*krcd*iisfn*rlpisky
ieyiaisillniwk*r*n*l*strifn*ynqc**stiiklysny*kf*kvswsfh*ssdc
rlkinfyvkyyy*k**finytwsksstlq*mfn*s*ffsigy**fprfmw*in*k*mgss
ccrcntscyycchivivsilyi


Frame B:
---TFRFNQXLKNNTCTIIYTVEEIKSNEKSFTFGMASFTLKKGAIKLSVLIKDYQYQST
LNTLQLVFYSTSGNDVETDCNQQESLTDTTNVDNQQLSSYIQITKNSKKLVGRFINQVIA
DSRSTFMSSTIIKNDDSSITLGLNLPHCNECLIDPDFSVLVTDDFQDSCGKSTRNKWVVP
VAVVIPVVTIAAI***fqfyi*


Frame C:
---hsdsixl*kiihvq*fiplrrlnqmkrvlhlewlhshlkkvrlnyqf*lkitnikvh
*ihcn*ystqhlemtlklivinknl*liqpmliinnyqvifkllkilks*lvvslik*lq
tqdqllcqvlllkmmihqlhlv*ifhiamnv*lilifqywllmiskihvvnqleing*fl
lpl*yqlllllpysnsfnfiy

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHM207 (VHM207Q) /CSM/VH/VHM2-A/VHM207Q.Seq.d/                       1181   0.0
VHD417 (VHD417Q) /CSM/VH/VHD4-A/VHD417Q.Seq.d/                        157   2e-37
SHB303 (SHB303Q) /CSM/SH/SHB3-A/SHB303Q.Seq.d/                        149   6e-35
SSG785 (SSG785Q) /CSM/SS/SSG7-D/SSG785Q.Seq.d/                        141   1e-32
VHF813 (VHF813Q) /CSM/VH/VHF8-A/VHF813Q.Seq.d/                         54   3e-06
SHG715 (SHG715Q) /CSM/SH/SHG7-A/SHG715Q.Seq.d/                         54   3e-06
VHM478 (VHM478Q) /CSM/VH/VHM4-D/VHM478Q.Seq.d/                         52   1e-05
AHQ752 (AHQ752Q) /CSM/AH/AHQ7-C/AHQ752Q.Seq.d/                         52   1e-05
VHG584 (VHG584Q) /CSM/VH/VHG5-D/VHG584Q.Seq.d/                         50   4e-05
VHK830 (VHK830Q) /CSM/VH/VHK8-B/VHK830Q.Seq.d/                         46   6e-04

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    56   5e-10  13
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    50   1e-08  11
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    52   2e-06  10
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    36   3e-06  13
AR409405|AR409405.1 Sequence 1 from patent US 6632935.             34   3e-05  19
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid.     34   3e-05  19
AL731825|AL731825.1 Bacillus thuringiensis subsp. israelensis plasmid pBtoxis.    32   2e-04  8
AE014016|AE014016.1 Buchnera aphidicola str. Bp (Baizongia pistaciae), section 1 of 2 of the complete genome.    32   6e-04  14
AC116920|AC116920.3 Dictyostelium discoideum chromosome 2 map 4415041-4520361 strain AX4, complete sequence.    34   0.003  9
CE342555|CE342555.1 tigr-gss-dog-17000334100264 Dog Library Canis familiaris genomic, genomic survey sequence.    32   0.004  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116963_42(AC116963|pid:none) Dictyostelium discoideum chromoso...   167   2e-40
AC117075_64(AC117075|pid:none) Dictyostelium discoideum chromoso...   155   1e-36
AC116960_61(AC116960|pid:none) Dictyostelium discoideum chromoso...   154   1e-36
AC116982_41(AC116982|pid:none) Dictyostelium discoideum chromoso...   152   9e-36
AC117081_43(AC117081|pid:none) Dictyostelium discoideum chromoso...   144   3e-33
AC116956_34(AC116956|pid:none) Dictyostelium discoideum chromoso...   142   1e-32
AC117081_39(AC117081|pid:none) Dictyostelium discoideum chromoso...   142   1e-32
AC117075_41(AC117075|pid:none) Dictyostelium discoideum chromoso...   135   9e-31
AC116920_25(AC116920|pid:none) Dictyostelium discoideum chromoso...   133   3e-30
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso...   133   5e-30

 psg: 0.90  gvh: 0.32  alm: 0.20  top: 0.53  tms: 0.07  mit: 0.34  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  8.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for VHM207 is cyt

>VHM207Z.Seq
NNNNNNNNNNATACATTCAGATTCAATCAANCTTTAAAAAATAATACATGTACAATAATT
TATACCGTTGAGGAGATTAAATCAAATGAAAAGAGTTTTACATTTGGAATGGCTTCATTC
ACACTTAAAAAAGGTGCGATTAAATTATCAGTTTTAATTAAAGATTACCAATATCAAAGT
ACATTGAATACATTGCAATTAGTATTCTACTCAACATCTGGAAATGACGTTGAAACTGAT
TGTAATCAACAAGAATCTTTAACTGATACAACCAATGTTGATAATCAACAATTATCAAGT
TATATTCAAATTACTAAAAATTCTAAAAAGTTAGTTGGTCGTTTCATTAATCAAGTGATT
GCAGACTCAAGATCAACTTTTATGTCAAGTACTATTATTAAAAATGATGATTCATCAATT
ACACTTGGTCTAAATCTTCCACATTGCAATGAATGTTTAATTGATCCTGATTTTTCAGTA
TTGGTTACTGATGATTTCCAAGATTCATGTGGTAAATCAACTAGAAATAAATGGGTAGTT
CCTGTTGCCGTTGTAATACCAGTTGTTACTATTGCTGCCATATAGTAATAGTTTCAATTT
TATATATAA