VHM181
Library VH
(Link to library)
Clone ID VHM181
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14929-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHM181 (VHM181Q) /CSM/VH/VHM1-D/VHM181Q.Seq.d/
XXXXXXXXXXCTCCAAAGCATCTAGAAAATTATTCAAACAAATTGGTGAACAATTCAAAA
TCGATTACTTTGAAAAGTTTTCAATCGTTGCTTCAAATGATTTAAATGAACCAACCATCA
TTGCTTTGAATAGACAAGGTCATGAAATTGATGTATTTGCAATTGGAACAAATTTGGTAA
CATGTCAAGCACAACCAGCTCTAGGTTGTGTTTATAAATTGGTAGAAATCAATGGTTCAC
CACGTATTAAATTATCACAAGAGGCAAATAAAATCACACTTCCAGGTAGAAAAACAGCCT
ATCGTTTATTTGGTTCTGAAGGTCACCCATTGGTTGACCTTTTAGTTGACGATAATGATA
TGATCAAAGATGGTTCTAAACAAATTCCACAAGTCGGTAAAAAGGTTTTATGTTTACATC
CATTTGAAGAACAAAAAAGAGTCATCGTAACACCAGTTCAAATCGAAAAATTACATCATA
TAGTTTTTGAAAAAGGTCAATTAACAATGCCCTTACCAGCATTAAATGATATTAGAGAAT
ACTGTTTCCAACAAATATCTAAAGTTAGAGAGGATCATCTTCGTAATAGTNATCCAACTC
CTTACAAAG
sequence update 2002. 9.10
Translated Amino Acid sequence
---SKASRKLFKQIGEQFKIDYFEKFSIVASNDLNEPTIIALNRQGHEIDVFAIGTNLVT
CQAQPALGCVYKLVEINGSPRIKLSQEANKITLPGRKTAYRLFGSEGHPLVDLLVDDNDM
IKDGSKQIPQVGKKVLCLHPFEEQKRVIVTPVQIEKLHHIVFEKGQLTMPLPALNDIREY
CFQQISKVREDHLRNSXPTPYK


Translated Amino Acid sequence (All Frames)
Frame A:
---SKASRKLFKQIGEQFKIDYFEKFSIVASNDLNEPTIIALNRQGHEIDVFAIGTNLVT
CQAQPALGCVYKLVEINGSPRIKLSQEANKITLPGRKTAYRLFGSEGHPLVDLLVDDNDM
IKDGSKQIPQVGKKVLCLHPFEEQKRVIVTPVQIEKLHHIVFEKGQLTMPLPALNDIREY
CFQQISKVREDHLRNSXPTPYK


Frame B:
---pkhlenysnklvnnsksitlksfqsllqmi*mnqpsll*idkvmklmylqleqiw*h
vkhnql*vvfinw*ksmvhhvlnyhkrqikshfqvekqpivylvlkvthwltf*ltimi*
skmvlnkfhksvkrfyvyihlknkkess*hqfksknyii*flkkvn*qcpyqh*milent
vsnkylkleriifviviqlltk


Frame C:
---qsi*kiiqtnw*tiqnrll*kvfnrcfk*fk*tnhhcfe*trs*n*cicnwnkfgnm
ssttssrlcl*igrnqwftty*iitrgk*nhtsr*knslsfiwf*rspig*pfs*r**yd
qrwf*tnstsr*kgfmftsi*rtkkshrntssnrkitsysf*krsinnaltsik*y*ril
fptni*s*rgsss**xsnslq


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHM181 (VHM181Q) /CSM/VH/VHM1-D/VHM181Q.Seq.d/ 1181 0.0
VFC674 (VFC674Q) /CSM/VF/VFC6-D/VFC674Q.Seq.d/ 1181 0.0
VFB587 (VFB587Q) /CSM/VF/VFB5-D/VFB587Q.Seq.d/ 1181 0.0
SFK562 (SFK562Q) /CSM/SF/SFK5-C/SFK562Q.Seq.d/ 1181 0.0
CHM731 (CHM731Q) /CSM/CH/CHM7-B/CHM731Q.Seq.d/ 1181 0.0
AFJ312 (AFJ312Q) /CSM/AF/AFJ3-A/AFJ312Q.Seq.d/ 1181 0.0
VSD869 (VSD869Q) /CSM/VS/VSD8-C/VSD869Q.Seq.d/ 1162 0.0
CHL467 (CHL467Q) /CSM/CH/CHL4-C/CHL467Q.Seq.d/ 1160 0.0
AFA496 (AFA496Q) /CSM/AF/AFA4-D/AFA496Q.Seq.d/ 1055 0.0
SSJ435 (SSJ435Q) /CSM/SS/SSJ4-B/SSJ435Q.Seq.d/ 38 0.15

own update 2003. 1. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AY214338|AY214338.1 Dictyostelium discoideum nicotinate phosphoribosyltransferase-like protein mRNA, complete cds. 1166 0.0 1
BP186499|BP186499.1 Dugesia japonica cDNA, clone: 01521_HH, expressed in the head. 38 6e-04 2
AB027295|AB027295.1 Physarum polycephalum mitochondrial DNA, complete genome. 34 0.001 8
AC119660|AC119660.7 Rattus norvegicus clone CH230-75N6, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 38 0.002 7
Z82278|Z82278.1 Caenorhabditis elegans cosmid M162. 32 0.15 5
X04465|X04465.1 Marchantia polymorpha chloroplast genome DNA. 32 0.50 7
AE014851|AE014851.1 Plasmodium falciparum 3D7 chromosome 12 section 8 of 9 of the complete sequence. 36 0.54 7
CR323511|CR323511.1 Medicago truncatula BAC ends cultivar Jemalong A17 of Medicago truncatula. 46 0.59 1
AC005140|AC005140.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 36 0.60 10
AC125226|AC125226.3 Mus musculus chromosome 7 clone RP23-39D21, complete sequence. 38 0.71 5
dna update 2004. 3.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q55G10) RecName: Full=Nicotinate phosphoribosyltransferase; ... 400 e-110
AY214338_1(AY214338|pid:none) Dictyostelium discoideum nicotinat... 397 e-109
AE014134_737(AE014134|pid:none) Drosophila melanogaster chromoso... 218 1e-55
(Q9VQX4) RecName: Full=Nicotinate phosphoribosyltransferase; ... 218 1e-55
AF395330_1(AF395330|pid:none) Aedes aegypti putative nicotinate ... 214 1e-54
AC104487_24(AC104487|pid:none) Oryza sativa chromosome 3 BAC OSJ... 196 4e-49
AC144431_11(AC144431|pid:none) Medicago truncatula clone mth2-21... 195 1e-48
AY214336_1(AY214336|pid:none) Medicago truncatula nicotinate pho... 194 2e-48
AP008210_826(AP008210|pid:none) Oryza sativa (japonica cultivar-... 193 3e-48
CR855094_1(CR855094|pid:none) Oryza sativa genomic DNA, chromoso... 193 3e-48
protein update 2009. 7.16
PSORT

psg: 0.61 gvh: 0.54 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.31 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
36.0 %: cytoplasmic
16.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: peroxisomal

>> prediction for VHM181 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHM181Z
3' end seq.
>VHM181Z.Seq
NNNNNNNNNNCTCCAAAGCATCTAGAAAATTATTCAAACAAATTGGTGAACAATTCAAAA
TCGATTACTTTGAAAAGTTTTCAATCGTTGCTTCAAATGATTTAAATGAACCAACCATCA
TTGCTTTGAATAGACAAGGTCATGAAATTGATGTATTTGCAATTGGAACAAATTTGGTAA
CATGTCAAGCACAACCAGCTCTAGGTTGTGTTTATAAATTGGTAGAAATCAATGGTTCAC
CACGTATTAAATTATCACAAGAGGCAAATAAAATCACACTTCCAGGTAGAAAAACAGCCT
ATCGTTTATTTGGTTCTGAAGGTCACCCATTGGTTGACCTTTTAGTTGACGATAATGATA
TGATCAAAGATGGTTCTAAACAAATTCCACAAGTCGGTAAAAAGGTTTTATGTTTACATC
CATTTGAAGAACAAAAAAGAGTCATCGTAACACCAGTTCAAATCGAAAAATTACATCATA
TAGTTTTTGAAAAAGGTCAATTAACAATGCCCTTACCAGCATTAAATGATATTAGAGAAT
ACTGTTTCCAACAAATATCTAAAGTTAGAGAGGATCATCTTCGTAATAGTNATCCAACTC
CTTACAAAG
Length of 3' end seq. 609
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -