>VHM176 (VHM176Q) /CSM/VH/VHM1-D/VHM176Q.Seq.d/
XXXXXXXXXXCAGGTGTATTTAATTCAAGTTTATGAAGGTGAACGTGCTATGACCAAAGA
TAATAATTTATTGGGTAAATTTGAACTTTCTGGTATTCCACCAGCACCAAGAGGTGTACC
ACAAGTTGAAGTTACATTTGATGTTGATGCAAATGGTATCTTAAATGTATCAGCTGAAGA
TAAATCAACTGGTAACAAACAAAAGATTACAATTACCAATGATAAAGGTCGTCTTTCAAA
AGAAGAAATTGAAAAAATGGTTGCTGATGCAGAGAAATTCAAACAACAAGATGAACAACA
AAAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCACTGTTAAAAATTC
AATTAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAATCAACTATTGAATC
TGAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAAAAGGATGAATA
TGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGAGTAAACTCTATCA
AGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAAAGTGATTCACCAA
AGAGTTCAAACAACAAAGTAGACGAATT

---VYLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQVEVTFDVDANGILNVSAEDK
STGNKQKITITNDKGRLSKEEIEKMVADAEKFKQQDEQQKDRVESKNKLENYAFTVKNSI
KDEKVAAKISDSDKSTIESETESVLKWLESNQTAEKDEYEDKMKALEAVVNPIMSKLYQE
GGMPQGGGMPGGMSK*ftkefkqqsrri

Frame A:
---rci*fkfmkvnvl*pkiiiywvnlnflvfhqhqevyhklklhlmlmqmvs*myqlki
nqlvtnkrlqlpmikvvfqkkklkkwllmqrnsnnkmnnkkivlnqrinwkimhsllkiq
lkmkklqpkfqiqinqllnlklkvysng*nqikpqkrmnmkir*kp*kqlsiqs*vnsik
kevchkvvvcqvvcqsdspkssnnkvde


Frame B:
---gvfnssl*r*tcydqr**fig*i*tfwyststkrctts*syi*c*ckwylkcis*r*
inw*qtkdynyq**rssfkrrn*kngc*creiqttr*ttkrsc*ike*igklcihc*kfn
*r*kscsqnfrfr*iny*i*n*kctqmvriksnrrkg*i*r*deslrsscqsnhe*tlsr
rryatrwwyarwyvkvihqrvqttk*tn


Frame C:
---VYLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQVEVTFDVDANGILNVSAEDK
STGNKQKITITNDKGRLSKEEIEKMVADAEKFKQQDEQQKDRVESKNKLENYAFTVKNSI
KDEKVAAKISDSDKSTIESETESVLKWLESNQTAEKDEYEDKMKALEAVVNPIMSKLYQE
GGMPQGGGMPGGMSK*ftkefkqqsrri

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHM176 (VHM176Q) /CSM/VH/VHM1-D/VHM176Q.Seq.d/                       1225   0.0
VHQ260 (VHQ260Q) /CSM/VH/VHQ2-C/VHQ260Q.Seq.d/                       1193   0.0
VHQ240 (VHQ240Q) /CSM/VH/VHQ2-B/VHQ240Q.Seq.d/                       1193   0.0
VHP873 (VHP873Q) /CSM/VH/VHP8-D/VHP873Q.Seq.d/                       1193   0.0
VHP719 (VHP719Q) /CSM/VH/VHP7-A/VHP719Q.Seq.d/                       1193   0.0
VHP716 (VHP716Q) /CSM/VH/VHP7-A/VHP716Q.Seq.d/                       1193   0.0
VHP437 (VHP437Q) /CSM/VH/VHP4-B/VHP437Q.Seq.d/                       1193   0.0
VHP420 (VHP420Q) /CSM/VH/VHP4-A/VHP420Q.Seq.d/                       1193   0.0
VHP266 (VHP266Q) /CSM/VH/VHP2-C/VHP266Q.Seq.d/                       1193   0.0
VHP236 (VHP236Q) /CSM/VH/VHP2-B/VHP236Q.Seq.d/                       1193   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X75263|X75263.1 D.discoideum (AX3) mRNA for heat shock cognate protein (hsc70).  1128   0.0    2
L22736|L22736.1 Dictyostelium discoideum heat shock protein (hspB) gene,.  1120   0.0    2
AJ310880|AJ310880.1 Cryptosporidium baileyi partial hsp70 gene for heat shock protein  70.    84   2e-41  4
AF221539|AF221539.1 Cryptosporidium baileyi heat shock protein 70 (HSP70) gene, partial cds.    84   2e-41  4
AF221542|AF221542.1 Cryptosporidium muris isolate 589 heat shock protein 70 (HSP70) gene, partial cds.    96   8e-40  5
AF221543|AF221543.1 Cryptosporidium muris isolate 707 heat shock protein 70 (HSP70) gene, partial cds.    92   3e-36  3
AF221541|AF221541.1 Cryptosporidium serpentis heat shock protein 70 (HSP70) gene, partial cds.    84   3e-36  5
BI773123|BI773123.1 kq45c07.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:Q23954 Q23954 HEAT SHOCK PROTEIN 70 ;, mRNA sequence.    90   4e-35  3
BI772941|BI772941.1 kq08c08.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:Q23954 Q23954 HEAT SHOCK PROTEIN 70 ;, mRNA sequence.    90   4e-35  3
BI773212|BI773212.1 kq63e05.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:Q23954 Q23954 HEAT SHOCK PROTEIN 70 ;, mRNA sequence.    90   4e-35  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...   312   5e-86
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ...   312   5e-86
AF033852_1(AF033852|pid:none) Spinacia oleracea cytosolic heat s...   244   1e-63
FB790108_1(FB790108|pid:none) Sequence 9381 from Patent WO200803...   244   2e-63
(Q54BE0) RecName: Full=Heat shock cognate 70 kDa protein 3;           244   2e-63
EF506932_1(EF506932|pid:none) Fasciola hepatica heat shock prote...   243   3e-63
FB790112_1(FB790112|pid:none) Sequence 9385 from Patent WO200803...   243   4e-63
EF506931_1(EF506931|pid:none) Fasciola gigantica heat shock prot...   242   7e-63
AC147536_23(AC147536|pid:none) Medicago truncatula clone mth2-9l...   241   2e-62
AY830127_1(AY830127|pid:none) Medicago sativa heat shock protein...   241   2e-62

 psg: 0.75  gvh: 0.39  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for VHM176 is cyt

>VHM176Z.Seq
NNNNNNNNNNCAGGTGTATTTAATTCAAGTTTATGAAGGTGAACGTGCTATGACCAAAGA
TAATAATTTATTGGGTAAATTTGAACTTTCTGGTATTCCACCAGCACCAAGAGGTGTACC
ACAAGTTGAAGTTACATTTGATGTTGATGCAAATGGTATCTTAAATGTATCAGCTGAAGA
TAAATCAACTGGTAACAAACAAAAGATTACAATTACCAATGATAAAGGTCGTCTTTCAAA
AGAAGAAATTGAAAAAATGGTTGCTGATGCAGAGAAATTCAAACAACAAGATGAACAACA
AAAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCACTGTTAAAAATTC
AATTAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAATCAACTATTGAATC
TGAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAAAAGGATGAATA
TGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGAGTAAACTCTATCA
AGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAAAGTGATTCACCAA
AGAGTTCAAACAACAAAGTAGACGAATT