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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHL862
Library VH
(Link to library)
Clone ID VHL862
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16579-1
Original site URL
Representative seq. ID VHL862P
(Link to Original site)
Representative DNA sequence 
>VHL862 (VHL862Q) /CSM/VH/VHL8-C/VHL862Q.Seq.d/
CCCTCAGGATAGCTGGAGCAGTATTCTAGTTCCATCTTGTAAAGACAATGATTAGCAGTT
TCGGGGGCGTAATGCTCTCAGCTGATTCTCAAACTCTGAACGGGTGGGTATCATTTTAAT
TCACTTAATTGGATTTTAAAATTAAATTGCACATGTGCAATGAAAAATAGGAGCTCTTAG
TGGGCCATTTTTGGTAAGCAGAACTGGCGATGTGGGTTGAACCAAATATTGGGATAAGAC
GTCTAACATTCACTAATAGATACCACAAAAGGTGTTAGTTCATTAAGACAGCAGGACGGT
GGCCATGGAAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAG
CCCTGAAAATGGATGACGCTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGAT
AATACTTTTAACGTGTAGGAAGGCGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAG
TGGAGTTGTCTTTAGTGCAGATCTTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTT
GAAGGCCGAAGTGGGGAAGGGTTCCATAACAATGGAATTCACTTATGGGTGAGTCGXXXX
XXXXXXGCCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAG
CGCTCATAGCGACGCTGCTTTTTGATCCTTCGATGTCGGCTCTTCTTATCATTGTGAAGC
AGAATTCACAAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTTAGAC
CGTCGTGAGACAGGTTAGTTTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTAGCATG
ATTTAGTACGAGAGGAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGACAAAAT
AGTGACCTGCCGCTACCATCCGTTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATT
CTAGAAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGG
TGGGGGACCACTTTCAACTTTAAACCATATGATTAATCGCTGTTACACTGCAGTTTCCTT
CCGGTTATTGTGGTGGGTGGCTAAATTCTAATTTATATCCTCGTTCCGCTCAACTCTTCG
ATTGTAGACGACTATCAAATNAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACG
AGGGGTTAGGCTTTTCCATA
sequence update 2002.10.25
Translated Amino Acid sequence 
psg*leqysssil*rq*lavsga*csqlilkl*tggyhfnslnwilklnctcamknrss*
waifgkqnwrcglnqilg*dv*hslidttkgvsslrqqdgghgsryplrsv*qltcqmd*
p*kwmtlavdgrcpivkrsdntfnv*egvkvt*klecefewscl*crs*w**QIFKRIYF
EGRSGEGFHNNGIHLWVS---

---PRGVRKVTTGITGLWQPSAHSDAAF*sfdvgssyhceaeftkcwivhpltrnvswv*
tvvrqvsftlllsivcviva*fstrgtvmpdhwsvglfdkivtcryhpldng*tplsqnp
f*krkpnalececcr*h*vvgggplstlnhminrcytavsfrllwwvakf*fissfrstl
rl*ttikxtrccklpssvqlrgvrlfh
Translated Amino Acid sequence (All Frames) 
Frame A:
psg*leqysssil*rq*lavsga*csqlilkl*tggyhfnslnwilklnctcamknrss*
waifgkqnwrcglnqilg*dv*hslidttkgvsslrqqdgghgsryplrsv*qltcqmd*
p*kwmtlavdgrcpivkrsdntfnv*egvkvt*klecefewscl*crs*w**QIFKRIYF
EGRSGEGFHNNGIHLWVS---

---a*rcqksyhrdnwlvaakrs*rrcflilrcrlflsl*srihkvldcsptnkerelgl
drretg*fyptvvnclrnssmi*yernchagslvcrfi*qnsdlplpsvg*wlnaskses
iletqtkcfrv*ml*vtlgcwwgttfnfkpyd*sllhcsflpvivvgg*iliyilvplns
sivddyqxn*vl*ase*rsvtrg*afp

Frame B:
pqdswssilvpsckdnd*qfrgrnals*fsnservgiilihligf*n*iahvq*kigals
gpflvsrtgdvg*tkywdktsnih**ipqkvlvh*dsrtvamevgir*gvcnnspakwts
peng*r*qwmvdaqslkeviilltcrka*r*rrslnvnssgvvfsadldgsskyskeftl
kaevgkgsitmeftyg*v---

---PRGVRKVTTGITGLWQPSAHSDAAF*sfdvgssyhceaeftkcwivhpltrnvswv*
tvvrqvsftlllsivcviva*fstrgtvmpdhwsvglfdkivtcryhpldng*tplsqnp
f*krkpnalececcr*h*vvgggplstlnhminrcytavsfrllwwvakf*fissfrstl
rl*ttikxtrccklpssvqlrgvrlfh

Frame C:
lriagavf*fhlvktmissfggvmlsadsqtlngwvsf*ft*ldfkiklhmcnek*ellv
ghfw*aelamwvepnigirrltftnryhkrc*fiktagrwpwksvsakecvtthlpngla
lkmddassgwsmpnr*kk**yf*rvgrregnvea*m*irvelslvqilmvvaniqknll*
rpkwgrvp*qwnslmges---

---levseklpqg*lacgsqaliatllfdpsmsalliivkqnsqsvglfth*qgt*agfr
ps*drlvlpyccqlfa***hdlvreelscritgl*vyltk**paatirwimaerl*vrih
srnanqml*svnvvgnirllvgdhfql*ti*liavtlqfpsgycggwlnsnlyprsaqlf
dcrrlsnxlgavsfrvafsyeglgfsi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL862 (VHL862Q) /CSM/VH/VHL8-C/VHL862Q.Seq.d/                       2353   0.0
VHM406 (VHM406Q) /CSM/VH/VHM4-A/VHM406Q.Seq.d/                       1205   0.0
VHM596 (VHM596Q) /CSM/VH/VHM5-D/VHM596Q.Seq.d/                       1203   0.0
VHL154 (VHL154Q) /CSM/VH/VHL1-C/VHL154Q.Seq.d/                       1203   0.0
CHO780 (CHO780Q) /CSM/CH/CHO7-D/CHO780Q.Seq.d/                       1203   0.0
SFE194 (SFE194Q) /CSM/SF/SFE1-D/SFE194Q.Seq.d/                       1197   0.0
CHL604 (CHL604Q) /CSM/CH/CHL6-A/CHL604Q.Seq.d/                       1197   0.0
VHC874 (VHC874Q) /CSM/VH/VHC8-D/VHC874Q.Seq.d/                       1195   0.0
VHQ477 (VHQ477Q) /CSM/VH/VHQ4-D/VHQ477Q.Seq.d/                       1195   0.0
VHK875 (VHK875Q) /CSM/VH/VHK8-D/VHK875Q.Seq.d/                       1195   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ443932) Dictyostelium discoideum cDNA clone:ddv54l16, 3' ...  1209   0.0    1
(BJ444075) Dictyostelium discoideum cDNA clone:ddv55l02, 3' ...  1205   0.0    1
(BJ385140) Dictyostelium discoideum cDNA clone:ddc51p19, 3' ...  1203   0.0    1
(BJ444622) Dictyostelium discoideum cDNA clone:ddv56o23, 3' ...  1201   0.0    1
(BJ443646) Dictyostelium discoideum cDNA clone:ddv53k13, 3' ...  1201   0.0    1
(BJ443278) Dictyostelium discoideum cDNA clone:ddv52o12, 3' ...  1189   0.0    1
(BJ444503) Dictyostelium discoideum cDNA clone:ddv56h13, 3' ...  1185   0.0    1
(AY171066) Dictyostelium discoideum extrachromosomal palindr...  1183   0.0    1
(AU034938) Dictyostelium discoideum slug cDNA, clone SLE369.     1183   0.0    1
(BJ446798) Dictyostelium discoideum cDNA clone:ddv63j20, 3' ...  1183   0.0    1
dna update 2008.11.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU430725_1(EU430725|pid:none) Cupressus sempervirens clone CYPLP...   131   4e-29
CP000497_644(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    60   9e-14
AY436773_1(AY436773|pid:none) Pyrus communis putative senescence...    76   2e-12
CP001575_406(CP001575|pid:none) Micromonas sp. RCC299 chromosome...    74   1e-11
AK230153_1(AK230153|pid:none) Arabidopsis thaliana mRNA for hypo...    68   6e-10
EU244380_1(EU244380|pid:none) Haliotis diversicolor clone HDr4CJ...    68   8e-10
BC114377_1(BC114377|pid:none) Homo sapiens cDNA clone MGC:134704...    65   6e-09
EF192058_1(EF192058|pid:none) Trichosanthes dioica clone TDM04 p...    52   3e-05
U12823_1(U12823|pid:none) Acanthamoeba polyphaga CDC:0187:1 hemo...    45   3e-05
AL844507_287(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    45   0.004
protein update 2009. 7.16
PSORT 

 psg: 0.60  gvh: 0.45  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 32.0 %: nuclear
	 28.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VHL862 is cyt
5' end seq. ID VHL862F
5' end seq. 
>VHL862F.Seq
CCCTCAGGATAGCTGGAGCAGTATTCTAGTTCCATCTTGTAAAGACAATGATTAGCAGTT
TCGGGGGCGTAATGCTCTCAGCTGATTCTCAAACTCTGAACGGGTGGGTATCATTTTAAT
TCACTTAATTGGATTTTAAAATTAAATTGCACATGTGCAATGAAAAATAGGAGCTCTTAG
TGGGCCATTTTTGGTAAGCAGAACTGGCGATGTGGGTTGAACCAAATATTGGGATAAGAC
GTCTAACATTCACTAATAGATACCACAAAAGGTGTTAGTTCATTAAGACAGCAGGACGGT
GGCCATGGAAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAG
CCCTGAAAATGGATGACGCTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGAT
AATACTTTTAACGTGTAGGAAGGCGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAG
TGGAGTTGTCTTTAGTGCAGATCTTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTT
GAAGGCCGAAGTGGGGAAGGGTTCCATAACAATGGAATTCACTTATGGGTGAGTCGNNNN
NNNNNN
Length of 5' end seq. 606
3' end seq. ID VHL862Z
3' end seq. 
>VHL862Z.Seq
NNNNNNNNNNGCCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGC
CAAGCGCTCATAGCGACGCTGCTTTTTGATCCTTCGATGTCGGCTCTTCTTATCATTGTG
AAGCAGAATTCACAAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTT
AGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTAG
CATGATTTAGTACGAGAGGAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGACA
AAATAGTGACCTGCCGCTACCATCCGTTGGATAATGGCTGAACGCCTCTAAGTCAGAATC
CATTCTAGAAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTG
TTGGTGGGGGACCACTTTCAACTTTAAACCATATGATTAATCGCTGTTACACTGCAGTTT
CCTTCCGGTTATTGTGGTGGGTGGCTAAATTCTAATTTATATCCTCGTTCCGCTCAACTC
TTCGATTGTAGACGACTATCAAATNAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGT
TACGAGGGGTTAGGCTTTTCCATA
Length of 3' end seq. 624
Connected seq. ID VHL862P
Connected seq. 
>VHL862P.Seq
CCCTCAGGATAGCTGGAGCAGTATTCTAGTTCCATCTTGTAAAGACAATGATTAGCAGTT
TCGGGGGCGTAATGCTCTCAGCTGATTCTCAAACTCTGAACGGGTGGGTATCATTTTAAT
TCACTTAATTGGATTTTAAAATTAAATTGCACATGTGCAATGAAAAATAGGAGCTCTTAG
TGGGCCATTTTTGGTAAGCAGAACTGGCGATGTGGGTTGAACCAAATATTGGGATAAGAC
GTCTAACATTCACTAATAGATACCACAAAAGGTGTTAGTTCATTAAGACAGCAGGACGGT
GGCCATGGAAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAG
CCCTGAAAATGGATGACGCTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGAT
AATACTTTTAACGTGTAGGAAGGCGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAG
TGGAGTTGTCTTTAGTGCAGATCTTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTT
GAAGGCCGAAGTGGGGAAGGGTTCCATAACAATGGAATTCACTTATGGGTGAGTCG----
------GCCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAG
CGCTCATAGCGACGCTGCTTTTTGATCCTTCGATGTCGGCTCTTCTTATCATTGTGAAGC
AGAATTCACAAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTTAGAC
CGTCGTGAGACAGGTTAGTTTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTAGCATG
ATTTAGTACGAGAGGAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGACAAAAT
AGTGACCTGCCGCTACCATCCGTTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATT
CTAGAAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGG
TGGGGGACCACTTTCAACTTTAAACCATATGATTAATCGCTGTTACACTGCAGTTTCCTT
CCGGTTATTGTGGTGGGTGGCTAAATTCTAATTTATATCCTCGTTCCGCTCAACTCTTCG
ATTGTAGACGACTATCAAATNAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACG
AGGGGTTAGGCTTTTCCATA
Length of connected seq. 1210
Full length Seq ID -
Full length Seq. -
Length of full length seq. -