NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHL846
Library VH
(Link to library)
Clone ID VHL846
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U10981-1|Contig-U13737-1
Original site URL
Representative seq. ID VHL846P
(Link to Original site)
Representative DNA sequence 
>VHL846 (VHL846Q) /CSM/VH/VHL8-B/VHL846Q.Seq.d/
AAAACCCAATAAATTTAAACATACGAATATAACATGTATTCGATTAATAGAATTGGTATA
CATGGTATATCAAATAAAATACTAAGTAGGCCAAAATTTTTTCATTCAAGTTCATCAATA
TTCTCCCTAAACCAAAATTTAAATAATTTTAAAAATAATAATAATTATATTTTAAATGGT
TACAATAAAATAACACATAATCATCATCATCAAACATTATTTCATAGACATTATTCAAAT
TTAAAGCAAGAGCAAGAAAATAAACAACAAAATGTAGGGAAAAATAGCGAAACATCACCT
TCATCAACAACAACAACAGAAAATATAACAACAGCAACAACAGCAACAACAAAAACAGAT
ATTAAAGAAACTCAAAATTCTACAATGTCAATGTTAAAAACAGTATTTAAATATTTATGG
CCAAAAGATAATAATGATTCAAAGATTAGAATTATAACATCAGTATTATTATTATTAAGT
GCCAAAGTGTTAACGGTTCAAATACCATTTATATTTAAAGATATAGTTGATAGTTTAACG
ACTACACAATCAGAGATGTTAACATTACCATTAGGATTATTATTAGCATATGGTGCAGTG
AAGATAACATCAAATGGTXXXXXXXXXXAAAATTAGAAAATGGTACAATTGTTTTTAGAG
ATATTTCATTTAAATATAATGATTCAGTACAAGTTTTAAATAATGTATCATTTGAATGTG
AAGGTGGTAAAAGAATTGCAATTGTTGGATCATCAGGTTCAGGTAAATCAACTCTATTAA
GATTATTATATAGATTTTATGACGTTTCATCTGGTTCCATTGAAATCGATGGTCAAGATA
TTAGAGGTATTCAATTGGAAAGTTTAAGAAAACATATTGGTGTTGTACCACAAGATACTG
TTCTATTCAATGATACCATTTACTATAACATTGCCTATGGTAATCCAAACGCTACAAAAG
AACAAGTTGAAAATGCTGCTCGTGCTGCTCACATTCATGAAGTTATTTTAAATATGAAAA
ATGGTTATGATACAATCTTAAAGGATTCTCCAATCGTTTTCTATGATGAGGCTACCTCTT
CATTGGATACTGAAAAAGAGAAATTAATTATGGACGCTCTAAGAGAATTATTTAAAGGTC
GTACCACTATTATGATAGCTCATCGTTTAAGTACAATCGTAGATGCTGATGAAATCATAG
TTTTAGGTACTGGGGTATTATTTTAGAACGGGTAATCATCAACAATTATTAGAATAGAAG
GAAAATATAGATCAATGGGGTGGCACAACAA
sequence update 2002.10.25
Translated Amino Acid sequence 
ktq*i*TYEYNMYSINRIGIHGISNKILSRPKFFHSSSSIFSLNQNLNNFKNNNNYILNG
YNKITHNHHHQTLFHRHYSNLKQEQENKQQNVGKNSETSPSSTTTTENITTATTATTKTD
IKETQNSTMSMLKTVFKYLWPKDNNDSKIRIITSVLLLLSAKVLTVQIPFIFKDIVDSLT
TTQSEMLTLPLGLLLAYGAVKITSNG---

---KLENGTIVFRDISFKYNDSVQVLNNVSFECEGGKRIAIVGSSGSGKSTLLRLLYRFY
DVSSGSIEIDGQDIRGIQLESLRKHIGVVPQDTVLFNDTIYYNIAYGNPNATKEQVENAA
RAAHIHEVILNMKNGYDTILKDSPIVFYDEATSSLDTEKEKLIMDALRELFKGRTTIMIA
HRLSTIVDADEIIVLGTGVLF*ng*sstiiriegkyrsmgwhn
Translated Amino Acid sequence (All Frames) 
Frame A:
ktq*i*TYEYNMYSINRIGIHGISNKILSRPKFFHSSSSIFSLNQNLNNFKNNNNYILNG
YNKITHNHHHQTLFHRHYSNLKQEQENKQQNVGKNSETSPSSTTTTENITTATTATTKTD
IKETQNSTMSMLKTVFKYLWPKDNNDSKIRIITSVLLLLSAKVLTVQIPFIFKDIVDSLT
TTQSEMLTLPLGLLLAYGAVKITSNG---

---kirkwyncf*ryfi*i**fstsfk*cii*m*rw*kncncwiirfr*insikiii*il
*rfiwfh*nrwsry*rysigkfkktywccttrycsiq*yhll*hclw*skrykrts*kcc
sccshs*syfkyekwl*ynlkgfsnrfl**gylfigy*kreinygrskrii*rsyhyyds
ssfkynrrc**nhsfrywgiilerviinny*nrrki*ingvaqq

Frame B:
kpnkfkhtnitcirlielvymvyqiky*vgqnffiqvhqysp*tki*iilkiiiiif*mv
tik*hiiiiikhyfidiiqi*skskkinnkm*gkiakhhlhqqqqqki*qqqqqqqqkqi
lkklkilqcqc*kqylniygqkiimiqrlel*hqyyyy*vpkc*rfkyhlylki*liv*r
lhnqrc*hyh*dyy*hmvq*r*hqm---

---KLENGTIVFRDISFKYNDSVQVLNNVSFECEGGKRIAIVGSSGSGKSTLLRLLYRFY
DVSSGSIEIDGQDIRGIQLESLRKHIGVVPQDTVLFNDTIYYNIAYGNPNATKEQVENAA
RAAHIHEVILNMKNGYDTILKDSPIVFYDEATSSLDTEKEKLIMDALRELFKGRTTIMIA
HRLSTIVDADEIIVLGTGVLF*ng*sstiiriegkyrsmgwhn

Frame C:
npinlniri*hvfd**nwytwyik*ntk*akifsfkfinilpkpkfk*f*k***lyfkwl
q*nnt*ssssniis*tlfkfkarark*ttkcrek*rnitfinnnnrkynnsnnsnnknry
*rnskfynvnvknsi*ifmakr***fkd*nynisiiiikcqsvngsntiyi*rys**fnd
ytirdvnitiriiisiwcsednikw---

---n*kmvqlfleifhlnimiqykf*imyhlnvkvvkelqlldhqvqvnqly*dyyidfm
tfhlvplksmvkilevfnwkv*enilvlyhkilfysmipftitlpmviqtlqknklkmll
vlltfmklf*i*kmvmiqs*rilqsfsmmrlplhwilkkrn*lwtl*enylkvvpll**l
iv*vqs*mlmks*f*vlgyyfrtgnhqqlle*kenidqwggtt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL846 (VHL846Q) /CSM/VH/VHL8-B/VHL846Q.Seq.d/                       1792   0.0
VHQ133 (VHQ133Q) /CSM/VH/VHQ1-B/VHQ133Q.Seq.d/                        805   0.0
VHD846 (VHD846Q) /CSM/VH/VHD8-B/VHD846Q.Seq.d/                        801   0.0
AFJ482 (AFJ482Q) /CSM/AF/AFJ4-D/AFJ482Q.Seq.d/                        781   0.0
VHH259 (VHH259Q) /CSM/VH/VHH2-C/VHH259Q.Seq.d/                        716   0.0
VHL510 (VHL510Q) /CSM/VH/VHL5-A/VHL510Q.Seq.d/                        533   e-150
VHK274 (VHK274Q) /CSM/VH/VHK2-D/VHK274Q.Seq.d/                        428   e-119
VHH355 (VHH355Q) /CSM/VH/VHH3-C/VHH355Q.Seq.d/                        428   e-119
VHL579 (VHL579Q) /CSM/VH/VHL5-D/VHL579Q.Seq.d/                         48   3e-04
VHA206 (VHA206Q) /CSM/VH/VHA2-A/VHA206Q.Seq.d/                         48   3e-04
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ443870) Dictyostelium discoideum cDNA clone:ddv54l12, 3' ...  1314   0.0    1
(AF466308) Dictyostelium discoideum ABC transporter AbcB5 (a...   805   0.0    8
(BJ446598) Dictyostelium discoideum cDNA clone:ddv63a09, 3' ...   805   0.0    6
(BJ438766) Dictyostelium discoideum cDNA clone:ddv38l12, 3' ...   801   0.0    3
(BJ344571) Dictyostelium discoideum cDNA clone:dda19d22, 3' ...   781   0.0    3
(BJ441058) Dictyostelium discoideum cDNA clone:ddv45e16, 3' ...   716   0.0    6
(BJ425036) Dictyostelium discoideum cDNA clone:ddv54l12, 5' ...   478   0.0    3
(BJ422318) Dictyostelium discoideum cDNA clone:ddv45e16, 5' ...   478   0.0    3
(BJ427678) Dictyostelium discoideum cDNA clone:ddv63a09, 5' ...   478   0.0    3
(BJ424912) Dictyostelium discoideum cDNA clone:ddv54c03, 5' ...   470   0.0    3
dna update 2008.11.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000087_1092(CP000087|pid:none) Rickettsia bellii RML369-C, com...   229   2e-58
CP000683_198(CP000683|pid:none) Rickettsia massiliae MTU5, compl...   226   2e-57
CP001635_813(CP001635|pid:none) Variovorax paradoxus S110 chromo...   225   3e-57
AE017197_189(AE017197|pid:none) Rickettsia typhi str. Wilmington...   223   9e-57
CP000053_1057(CP000053|pid:none) Rickettsia felis URRWXCal2, com...   223   1e-56
BX640446_157(BX640446|pid:none) Bordetella bronchiseptica strain...   222   3e-56
CP000143_1282(CP000143|pid:none) Rhodobacter sphaeroides 2.4.1 c...   221   4e-56
CP000577_1343(CP000577|pid:none) Rhodobacter sphaeroides ATCC 17...   221   4e-56
CP000720_2923(CP000720|pid:none) Yersinia pseudotuberculosis IP ...   221   6e-56
BX640427_333(BX640427|pid:none) Bordetella parapertussis strain ...   221   6e-56
protein update 2009. 7.16
PSORT 

 psg: 0.80  gvh: 0.43  alm: 0.28  top: 0.20  tms: 0.07  mit: 0.38  mip: 0.12
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 24.0 %: mitochondrial
	 16.0 %: cytoplasmic
	 16.0 %: nuclear
	  8.0 %: Golgi
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for VHL846 is end
5' end seq. ID VHL846F
5' end seq. 
>VHL846F.Seq
AAAACCCAATAAATTTAAACATACGAATATAACATGTATTCGATTAATAGAATTGGTATA
CATGGTATATCAAATAAAATACTAAGTAGGCCAAAATTTTTTCATTCAAGTTCATCAATA
TTCTCCCTAAACCAAAATTTAAATAATTTTAAAAATAATAATAATTATATTTTAAATGGT
TACAATAAAATAACACATAATCATCATCATCAAACATTATTTCATAGACATTATTCAAAT
TTAAAGCAAGAGCAAGAAAATAAACAACAAAATGTAGGGAAAAATAGCGAAACATCACCT
TCATCAACAACAACAACAGAAAATATAACAACAGCAACAACAGCAACAACAAAAACAGAT
ATTAAAGAAACTCAAAATTCTACAATGTCAATGTTAAAAACAGTATTTAAATATTTATGG
CCAAAAGATAATAATGATTCAAAGATTAGAATTATAACATCAGTATTATTATTATTAAGT
GCCAAAGTGTTAACGGTTCAAATACCATTTATATTTAAAGATATAGTTGATAGTTTAACG
ACTACACAATCAGAGATGTTAACATTACCATTAGGATTATTATTAGCATATGGTGCAGTG
AAGATAACATCAAATGGTNNNNNNNNNN
Length of 5' end seq. 628
3' end seq. ID VHL846Z
3' end seq. 
>VHL846Z.Seq
NNNNNNNNNNAAAATTAGAAAATGGTACAATTGTTTTTAGAGATATTTCATTTAAATATA
ATGATTCAGTACAAGTTTTAAATAATGTATCATTTGAATGTGAAGGTGGTAAAAGAATTG
CAATTGTTGGATCATCAGGTTCAGGTAAATCAACTCTATTAAGATTATTATATAGATTTT
ATGACGTTTCATCTGGTTCCATTGAAATCGATGGTCAAGATATTAGAGGTATTCAATTGG
AAAGTTTAAGAAAACATATTGGTGTTGTACCACAAGATACTGTTCTATTCAATGATACCA
TTTACTATAACATTGCCTATGGTAATCCAAACGCTACAAAAGAACAAGTTGAAAATGCTG
CTCGTGCTGCTCACATTCATGAAGTTATTTTAAATATGAAAAATGGTTATGATACAATCT
TAAAGGATTCTCCAATCGTTTTCTATGATGAGGCTACCTCTTCATTGGATACTGAAAAAG
AGAAATTAATTATGGACGCTCTAAGAGAATTATTTAAAGGTCGTACCACTATTATGATAG
CTCATCGTTTAAGTACAATCGTAGATGCTGATGAAATCATAGTTTTAGGTACTGGGGTAT
TATTTTAGAACGGGTAATCATCAACAATTATTAGAATAGAAGGAAAATATAGATCAATGG
GGTGGCACAACAA
Length of 3' end seq. 673
Connected seq. ID VHL846P
Connected seq. 
>VHL846P.Seq
AAAACCCAATAAATTTAAACATACGAATATAACATGTATTCGATTAATAGAATTGGTATA
CATGGTATATCAAATAAAATACTAAGTAGGCCAAAATTTTTTCATTCAAGTTCATCAATA
TTCTCCCTAAACCAAAATTTAAATAATTTTAAAAATAATAATAATTATATTTTAAATGGT
TACAATAAAATAACACATAATCATCATCATCAAACATTATTTCATAGACATTATTCAAAT
TTAAAGCAAGAGCAAGAAAATAAACAACAAAATGTAGGGAAAAATAGCGAAACATCACCT
TCATCAACAACAACAACAGAAAATATAACAACAGCAACAACAGCAACAACAAAAACAGAT
ATTAAAGAAACTCAAAATTCTACAATGTCAATGTTAAAAACAGTATTTAAATATTTATGG
CCAAAAGATAATAATGATTCAAAGATTAGAATTATAACATCAGTATTATTATTATTAAGT
GCCAAAGTGTTAACGGTTCAAATACCATTTATATTTAAAGATATAGTTGATAGTTTAACG
ACTACACAATCAGAGATGTTAACATTACCATTAGGATTATTATTAGCATATGGTGCAGTG
AAGATAACATCAAATGGT----------AAAATTAGAAAATGGTACAATTGTTTTTAGAG
ATATTTCATTTAAATATAATGATTCAGTACAAGTTTTAAATAATGTATCATTTGAATGTG
AAGGTGGTAAAAGAATTGCAATTGTTGGATCATCAGGTTCAGGTAAATCAACTCTATTAA
GATTATTATATAGATTTTATGACGTTTCATCTGGTTCCATTGAAATCGATGGTCAAGATA
TTAGAGGTATTCAATTGGAAAGTTTAAGAAAACATATTGGTGTTGTACCACAAGATACTG
TTCTATTCAATGATACCATTTACTATAACATTGCCTATGGTAATCCAAACGCTACAAAAG
AACAAGTTGAAAATGCTGCTCGTGCTGCTCACATTCATGAAGTTATTTTAAATATGAAAA
ATGGTTATGATACAATCTTAAAGGATTCTCCAATCGTTTTCTATGATGAGGCTACCTCTT
CATTGGATACTGAAAAAGAGAAATTAATTATGGACGCTCTAAGAGAATTATTTAAAGGTC
GTACCACTATTATGATAGCTCATCGTTTAAGTACAATCGTAGATGCTGATGAAATCATAG
TTTTAGGTACTGGGGTATTATTTTAGAACGGGTAATCATCAACAATTATTAGAATAGAAG
GAAAATATAGATCAATGGGGTGGCACAACAA
Length of connected seq. 1281
Full length Seq ID -
Full length Seq. -
Length of full length seq. -