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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHL788
Library VH
(Link to library)
Clone ID VHL788
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15732-1
Original site URL
Representative seq. ID VHL788P
(Link to Original site)
Representative DNA sequence 
>VHL788 (VHL788Q) /CSM/VH/VHL7-D/VHL788Q.Seq.d/
GTAAAACCATTATTGAAAAAGACATAAATATATAATAAATAATGTCAGAACCAAAACCAA
CTCAACCAATCAAAGAGATTGATGAGGAAACTAAAAGAAAGAATGAAGAGAAAAAGAAAG
CCAAAGAGGCAGAGAAAGCAGAGAAATTAGCAAAAATGAAAGAAAAGGAAGCTAAACAAG
CAGCAGCAAAAGAAAAAGAATTACAAAATAAACTTAAAAAAGAACAAGAGAAAAAAGAAA
AAGAAGCTGAAGAAAAAGAAAAACAAGAAGCTGAAGAAAAAATTGTTAGAGAACATATTG
AAAAAATTTTAAAAACCCCAAAGGGTGAAAAGAAAGATGTTTCAAGTTTATTATCATCAT
ATCATCCAACAGCAGTTGAATCAATTTGGTATGATTATTGGTTAGATAATGGATATTTTT
CACCAGAGAAACAAATGGAGATTCAACCACATGTAGTTAAAGATAAAAAGTTTGTAATTG
TTATTCCACCACCAAATGTTACAGGTAGTTTACATTTAGGACATGCATTAACCAATTCAA
TTCAAGATGCAGTTGTTCGTTATCATCGTATGAAGGGTGAAGTTTGTTTATGGGTACCAG
GTACAGATCATGCAGGXXXXXXXXXXTTTATTACATCCATTCATGCCATACCTCACCGAG
GAGTTGTATCAATCATTACCACGTCGTCCAGAAGATGTCATTCCAACCATTATGTTATGT
CCATACCCACAATCTCAATCATGTTGGGCCAATTCTGACATTGAGGAAGAAATGAAACAA
TGTCAAGATATCATCAAATCAATTCGTTCACTTCGTGCTACCTATACCATTCCAGCCTCT
AAAAAACTTCACACTTATCTTCACGTTAAAAATCAAGAGAATCTCGAACGTTTCACTAAA
AACTCTTCATTCATTCGTGTTTTAGCTTATGCCTCTGAACTCGAAGTTTCCATTAGTGAT
GAATCTCGTCCTGGTTGTATCGTTAATGTTGTCAATGAAAATGTTTCAACCCTTTTAGAT
GTTAGAGGATCTGTTGATTTCAATCTTGAAATTGCTCGTCTCGAAACAAAGAAACAACAA
TTGGTCAAAAACTATGAAACTTTAGTTTCAAAAACTACCATACCTTCTTATGATAAAGTT
CCACAAAATATCAGAGATGATAATACTCAAAAAATTAAAGCTTTAGATGAAGAAATTAAT
ATTACAAACAAAACCATGAAAGTTTTACAAAATTAAATATTTAAAATTATAAATAAATAA
TAATAATAAAAAAAGTTTAATACTAA
sequence update 2002.10.25
Translated Amino Acid sequence 
ktiiekdini**IMSEPKPTQPIKEIDEETKRKNEEKKKAKEAEKAEKLAKMKEKEAKQA
AAKEKELQNKLKKEQEKKEKEAEEKEKQEAEEKIVREHIEKILKTPKGEKKDVSSLLSSY
HPTAVESIWYDYWLDNGYFSPEKQMEIQPHVVKDKKFVIVIPPPNVTGSLHLGHALTNSI
QDAVVRYHRMKGEVCLWVPGTDHA---

---LLHPFMPYLTEELYQSLPRRPEDVIPTIMLCPYPQSQSCWANSDIEEEMKQCQDIIK
SIRSLRATYTIPASKKLHTYLHVKNQENLERFTKNSSFIRVLAYASELEVSISDESRPGC
IVNVVNENVSTLLDVRGSVDFNLEIARLETKKQQLVKNYETLVSKTTIPSYDKVPQNIRD
DNTQKIKALDEEINITNKTMKVLQN*ifkiink****kkfnt
Translated Amino Acid sequence (All Frames) 
Frame A:
vkpllkkt*iynk*cqnqnqlnqskrlmrklkermkrkrkpkrqrkqrn*qk*kkrklnk
qqqkkknykinlkknkrkkkkklkkkknkklkkkllenilkkf*kpqrvkrkmfqvyyhh
iiqqqlnqfgmiig*imdifhqrnkwrfnhm*lkiksl*llfhhqmlqvvyi*dmh*piq
fkmqlfviiv*rvkfvygyqvqimq---

---fitsihaiphrgvvsiittssrrchsnhyvmsiptisimlgqf*h*grnetmsryhq
insftscylyhssl*ktshlssr*ksresrtfh*klfihscfslcl*trsfh***isswl
yr*ccq*kcfnpfrc*ric*fqs*ncssrnkettigqkl*nfsfknyhtfl**sstkyqr
**yskn*sfr*rn*yykqnhesftklni*nyk*iiiikkv*y*

Frame B:
*nhy*krhkyiinnvrtktnstnqrd**gn*kke*rekesqrgresreisknerkgs*ts
sskrkritk*t*krtrekrkrs*rkrktrs*rknc*rty*knfknpkg*kercfkfiiii
ssnss*inlv*llvr*wifftretngdsttcs*r*kvcncysttkcyr*ftfrtcinqfn
srcscslssyeg*slfmgtryrscr---

---LLHPFMPYLTEELYQSLPRRPEDVIPTIMLCPYPQSQSCWANSDIEEEMKQCQDIIK
SIRSLRATYTIPASKKLHTYLHVKNQENLERFTKNSSFIRVLAYASELEVSISDESRPGC
IVNVVNENVSTLLDVRGSVDFNLEIARLETKKQQLVKNYETLVSKTTIPSYDKVPQNIRD
DNTQKIKALDEEINITNKTMKVLQN*ifkiink****kkfnt

Frame C:
ktiiekdini**IMSEPKPTQPIKEIDEETKRKNEEKKKAKEAEKAEKLAKMKEKEAKQA
AAKEKELQNKLKKEQEKKEKEAEEKEKQEAEEKIVREHIEKILKTPKGEKKDVSSLLSSY
HPTAVESIWYDYWLDNGYFSPEKQMEIQPHVVKDKKFVIVIPPPNVTGSLHLGHALTNSI
QDAVVRYHRMKGEVCLWVPGTDHA---

---yyihschtsprscinhyhvvqkmsfqplcyvhthnlnhvgpiltlrkk*nnvkissn
qfvhfvlpipfqplknftliftlkikrisnvslktlhsfvf*lmplnskfplvmnlvlvv
slmlsmkmfqpf*mledllisilkllvskqrnnnwsktmkl*fqklpyllmikfhkisem
iilkklkl*mkklilqtkp*kfykikylkl*innnnkkslil
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL788 (VHL788Q) /CSM/VH/VHL7-D/VHL788Q.Seq.d/                       1748   0.0
VHL460 (VHL460Q) /CSM/VH/VHL4-C/VHL460Q.Seq.d/                       1191   0.0
VHL308 (VHL308Q) /CSM/VH/VHL3-A/VHL308Q.Seq.d/                       1191   0.0
VHM840 (VHM840Q) /CSM/VH/VHM8-B/VHM840Q.Seq.d/                       1185   0.0
VHA717 (VHA717Q) /CSM/VH/VHA7-A/VHA717Q.Seq.d/                       1178   0.0
SHD476 (SHD476Q) /CSM/SH/SHD4-D/SHD476Q.Seq.d/                       1178   0.0
CHO422 (CHO422Q) /CSM/CH/CHO4-A/CHO422Q.Seq.d/                       1178   0.0
VHP692 (VHP692Q) /CSM/VH/VHP6-D/VHP692Q.Seq.d/                       1172   0.0
VHJ111 (VHJ111Q) /CSM/VH/VHJ1-A/VHJ111Q.Seq.d/                       1170   0.0
AHC525 (AHC525Q) /CSM/AH/AHC5-B/AHC525Q.Seq.d/                       1170   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC115612) Dictyostelium discoideum chromosome 2 map 6245135...  1122   0.0    1
(BJ444023) Dictyostelium discoideum cDNA clone:ddv54p21, 3' ...  1122   0.0    1
(BJ443635) Dictyostelium discoideum cDNA clone:ddv53h16, 3' ...  1122   0.0    1
(BJ443525) Dictyostelium discoideum cDNA clone:ddv53p01, 3' ...  1122   0.0    1
(BJ436707) Dictyostelium discoideum cDNA clone:ddv32b05, 3' ...  1122   0.0    1
(BJ405177) Dictyostelium discoideum cDNA clone:dds30h20, 3' ...  1122   0.0    1
(BJ446472) Dictyostelium discoideum cDNA clone:ddv62g24, 3' ...  1116   0.0    1
(BJ444468) Dictyostelium discoideum cDNA clone:ddv56p10, 3' ...  1116   0.0    1
(BJ442168) Dictyostelium discoideum cDNA clone:ddv49e03, 3' ...  1114   0.0    1
(BJ349352) Dictyostelium discoideum cDNA clone:dda36a07, 3' ...  1114   0.0    1
dna update 2008.11.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86KU2) RecName: Full=Probable valyl-tRNA synthetase, cytoplasm...   392   e-107
AB092433_1(AB092433|pid:none) Entamoeba histolytica mRNA for val...   127   7e-28
CR954203_287(CR954203|pid:none) Ostreococcus tauri strain OTTH05...   127   9e-28
AE013599_1725(AE013599|pid:none) Drosophila melanogaster chromos...   125   3e-27
AB008527_1(AB008527|pid:none) Trichomonas vaginalis gene for Val...   122   3e-26
AB008526_1(AB008526|pid:none) Trichomonas vaginalis gene for Val...   122   3e-26
FN357900_10(FN357900|pid:none) Schistosoma mansoni genome sequen...   120   8e-26
EU282356_1(EU282356|pid:none) Sus scrofa valyl-tRNA synthetase (...   119   2e-25
(P26640) RecName: Full=Valyl-tRNA synthetase;          EC=6.1.1....   119   2e-25
BC012808_1(BC012808|pid:none) Homo sapiens valyl-tRNA synthetase...   119   2e-25
protein update 2009. 7.16
PSORT 

 psg: 0.61  gvh: 0.07  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for VHL788 is nuc
5' end seq. ID VHL788F
5' end seq. 
>VHL788F.Seq
GTAAAACCATTATTGAAAAAGACATAAATATATAATAAATAATGTCAGAACCAAAACCAA
CTCAACCAATCAAAGAGATTGATGAGGAAACTAAAAGAAAGAATGAAGAGAAAAAGAAAG
CCAAAGAGGCAGAGAAAGCAGAGAAATTAGCAAAAATGAAAGAAAAGGAAGCTAAACAAG
CAGCAGCAAAAGAAAAAGAATTACAAAATAAACTTAAAAAAGAACAAGAGAAAAAAGAAA
AAGAAGCTGAAGAAAAAGAAAAACAAGAAGCTGAAGAAAAAATTGTTAGAGAACATATTG
AAAAAATTTTAAAAACCCCAAAGGGTGAAAAGAAAGATGTTTCAAGTTTATTATCATCAT
ATCATCCAACAGCAGTTGAATCAATTTGGTATGATTATTGGTTAGATAATGGATATTTTT
CACCAGAGAAACAAATGGAGATTCAACCACATGTAGTTAAAGATAAAAAGTTTGTAATTG
TTATTCCACCACCAAATGTTACAGGTAGTTTACATTTAGGACATGCATTAACCAATTCAA
TTCAAGATGCAGTTGTTCGTTATCATCGTATGAAGGGTGAAGTTTGTTTATGGGTACCAG
GTACAGATCATGCAGGNNNNNNNNNN
Length of 5' end seq. 626
3' end seq. ID VHL788Z
3' end seq. 
>VHL788Z.Seq
NNNNNNNNNNTTTATTACATCCATTCATGCCATACCTCACCGAGGAGTTGTATCAATCAT
TACCACGTCGTCCAGAAGATGTCATTCCAACCATTATGTTATGTCCATACCCACAATCTC
AATCATGTTGGGCCAATTCTGACATTGAGGAAGAAATGAAACAATGTCAAGATATCATCA
AATCAATTCGTTCACTTCGTGCTACCTATACCATTCCAGCCTCTAAAAAACTTCACACTT
ATCTTCACGTTAAAAATCAAGAGAATCTCGAACGTTTCACTAAAAACTCTTCATTCATTC
GTGTTTTAGCTTATGCCTCTGAACTCGAAGTTTCCATTAGTGATGAATCTCGTCCTGGTT
GTATCGTTAATGTTGTCAATGAAAATGTTTCAACCCTTTTAGATGTTAGAGGATCTGTTG
ATTTCAATCTTGAAATTGCTCGTCTCGAAACAAAGAAACAACAATTGGTCAAAAACTATG
AAACTTTAGTTTCAAAAACTACCATACCTTCTTATGATAAAGTTCCACAAAATATCAGAG
ATGATAATACTCAAAAAATTAAAGCTTTAGATGAAGAAATTAATATTACAAACAAAACCA
TGAAAGTTTTACAAAATTAAATATTTAAAATTATAAATAAATAATAATAATAAAAAAAGT
TTAATACTAA
Length of 3' end seq. 670
Connected seq. ID VHL788P
Connected seq. 
>VHL788P.Seq
GTAAAACCATTATTGAAAAAGACATAAATATATAATAAATAATGTCAGAACCAAAACCAA
CTCAACCAATCAAAGAGATTGATGAGGAAACTAAAAGAAAGAATGAAGAGAAAAAGAAAG
CCAAAGAGGCAGAGAAAGCAGAGAAATTAGCAAAAATGAAAGAAAAGGAAGCTAAACAAG
CAGCAGCAAAAGAAAAAGAATTACAAAATAAACTTAAAAAAGAACAAGAGAAAAAAGAAA
AAGAAGCTGAAGAAAAAGAAAAACAAGAAGCTGAAGAAAAAATTGTTAGAGAACATATTG
AAAAAATTTTAAAAACCCCAAAGGGTGAAAAGAAAGATGTTTCAAGTTTATTATCATCAT
ATCATCCAACAGCAGTTGAATCAATTTGGTATGATTATTGGTTAGATAATGGATATTTTT
CACCAGAGAAACAAATGGAGATTCAACCACATGTAGTTAAAGATAAAAAGTTTGTAATTG
TTATTCCACCACCAAATGTTACAGGTAGTTTACATTTAGGACATGCATTAACCAATTCAA
TTCAAGATGCAGTTGTTCGTTATCATCGTATGAAGGGTGAAGTTTGTTTATGGGTACCAG
GTACAGATCATGCAGG----------TTTATTACATCCATTCATGCCATACCTCACCGAG
GAGTTGTATCAATCATTACCACGTCGTCCAGAAGATGTCATTCCAACCATTATGTTATGT
CCATACCCACAATCTCAATCATGTTGGGCCAATTCTGACATTGAGGAAGAAATGAAACAA
TGTCAAGATATCATCAAATCAATTCGTTCACTTCGTGCTACCTATACCATTCCAGCCTCT
AAAAAACTTCACACTTATCTTCACGTTAAAAATCAAGAGAATCTCGAACGTTTCACTAAA
AACTCTTCATTCATTCGTGTTTTAGCTTATGCCTCTGAACTCGAAGTTTCCATTAGTGAT
GAATCTCGTCCTGGTTGTATCGTTAATGTTGTCAATGAAAATGTTTCAACCCTTTTAGAT
GTTAGAGGATCTGTTGATTTCAATCTTGAAATTGCTCGTCTCGAAACAAAGAAACAACAA
TTGGTCAAAAACTATGAAACTTTAGTTTCAAAAACTACCATACCTTCTTATGATAAAGTT
CCACAAAATATCAGAGATGATAATACTCAAAAAATTAAAGCTTTAGATGAAGAAATTAAT
ATTACAAACAAAACCATGAAAGTTTTACAAAATTAAATATTTAAAATTATAAATAAATAA
TAATAATAAAAAAAGTTTAATACTAA
Length of connected seq. 1276
Full length Seq ID -
Full length Seq. -
Length of full length seq. -