VHL684
Library VH
(Link to library)
Clone ID VHL684
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15708-1
Original site URL
Representative seq. ID VHL684P
(Link to Original site)
Representative DNA sequence
>VHL684 (VHL684Q) /CSM/VH/VHL6-D/VHL684Q.Seq.d/
ATATAATCCATTAATATTAAATTAATTTCATTTTATTGCATGTAATATAATAATAAATAA
AATAAAATAAAATAAAATAAAATAAAATAAAAATTTAAATAAAAAATAAAAAGAATAAAG
AAAAATAAAACTCACAACACACAAATATTAAAAAAAACTATACTTATAAAAAAAAATAAA
AAATAAAAAATAAAAAAATAACCCACACACTCGAACTAATAATAAACAATAAACAAACAC
ACACACACATACATACACACACCAATAAACTAAATATATAGTAATAATAATAATAATAAA
TGGATCAATTAATCCCAGTTATTAATAAACTTCAAGATGTATTTAATACATTAGGATCAG
ACCCATTGGATTTACCACAAATCGTTGTTGTTGGTAGTCAATCTTCAGGTAAAAGTAGTG
TACTTGAAAATATAGTAGGTCGTGATTTTTTACCAAGAGGTTCTGGTATTGTAACAAGAA
GACCTTTGATTTTACAATTAACTCATTTACCAATTGCTGATGATGGATCACAAACTCAAG
AATGGGGTGAATTTTTACATAAACCAAATGATATGTTTTATGATTTCTCAGAGATTXXXX
XXXXXXTAAACCAAGTTCAATCCCACAAAATGGTCCAACCAATAATAATAATAATACCAA
TAATAATAATAGACAAGATCATCAACAAGGTTCTTTCTTTTCATCTTTTTTCAGAGCTTC
ACCTGATCCATCTTTAGGTCAATATGGTGGTGCTAATAATAGTAATAATTCAAATAATCC
AACATCACCAATTAATTCAAGTAGTAATAGCGGTAATAATTATAATACTTTTGGTGGTCA
ACAATCATCATCTTCATCATCACAACAATTACAACAATCATCACAATCACAATATAAAAC
TAGTTATAATAATAATAATAATAGTAGCAGCAATAATAGTAGTTATAATCGTTATCAAGA
TGATTTCTATGGTAGAGGTGATAAATTAAATCAAGTACCATCAATTATTAAAGCACCAGA
TGATTTAACAAGTAAAGAGAAATTTGAAACTGAATTAATTCGTGAACTTTTAATTTCCTA
TTTTAATATCGTTAAAAAGAATGTTAAGGATTCAGTTCCAAAATCAATTATGCATTTCTT
GGTCAATCAATCAAAAGAACACATTCAAAATGAATTGGTTGCAGCCCTCTACAAAGAGGA
ATTGTTTGATGAATTATTAGAGGAATCACCACAAATCTCTAGTAAGAGAAAATCTTGTAA
AGCTATGATCGAAATTTTAAGAAAAGCAAANAAATTATTAANAAATTAGAGATTT
sequence update 2002.10.25
Translated Amino Acid sequence
iih*y*infillhvi***ik*nkik*nkiki*iknkknkek*nsqhtnikknytykkk*k
iknkkithtleliinnkqththihthtnklni*******MDQLIPVINKLQDVFNTLGSD
PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQE
WGEFLHKPNDMFYDFSEI---

---KPSSIPQNGPTNNNNNTNNNNRQDHQQGSFFSSFFRASPDPSLGQYGGANNSNNSNN
PTSPINSSSNSGNNYNTFGGQQSSSSSSQQLQQSSQSQYKTSYNNNNNSSSNNSSYNRYQ
DDFYGRGDKLNQVPSIIKAPDDLTSKEKFETELIRELLISYFNIVKKNVKDSVPKSIMHF
LVNQSKEHIQNELVAALYKEELFDELLEESPQISSKRKSCKAMIEILRKAXKLLXN*rf


Translated Amino Acid sequence (All Frames)
Frame A:
i*siniklisfycm*ynnk*nkik*nkik*kfk*kikrikknkthntqilkktilikknk
k*kikk*pthsn***tinkhthtyihtpin*iysnnnnnkwin*sqllinfkmylih*dq
thwiyhkslllvvnlqvkvvylki**vvifyqevlvl*qedl*fyn*liyqllmmdhklk
ngvnfyinqmicfmisqr---

---*tkfnptkwsnq****yq****trsstrfflfiffqsft*sifrsiwwc*****fk*
snitn*fk***r**l*yfwwstiiifiittittiititi*n*l*******qq***l*sls
r*flw*r**iksstiny*str*fnk*rei*n*ins*tfnflf*yr*kec*gfsskinyaf
lgqsikrthsk*igcsplqrgiv**iirgittnl**ekil*sydrnfkkskxiixklei

Frame B:
ynpliln*fhfiacniiinkik*nkik*nknlnkk*ke*rkikltthky*kklyl*kkik
nkk*knnphtrtnnkq*tnththtythq*tkyiviiiiingsinpsy**tsrci*yirir
pigfttnrccw*sifr*k*ct*kysrs*fftkrfwycnkktfdftinsftnc**witnsr
mg*ift*tk*yvl*flrd---

---KPSSIPQNGPTNNNNNTNNNNRQDHQQGSFFSSFFRASPDPSLGQYGGANNSNNSNN
PTSPINSSSNSGNNYNTFGGQQSSSSSSQQLQQSSQSQYKTSYNNNNNSSSNNSSYNRYQ
DDFYGRGDKLNQVPSIIKAPDDLTSKEKFETELIRELLISYFNIVKKNVKDSVPKSIMHF
LVNQSKEHIQNELVAALYKEELFDELLEESPQISSKRKSCKAMIEILRKAXKLLXN*rf

Frame C:
iih*y*infillhvi***ik*nkik*nkiki*iknkknkek*nsqhtnikknytykkk*k
iknkkithtleliinnkqththihthtnklni*******MDQLIPVINKLQDVFNTLGSD
PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQE
WGEFLHKPNDMFYDFSEI---

---nqvqshkmvqpiiiiipiiiidkiinkvlsfhlfselhlihl*vnmvvliiviiqii
qhhqliqvviaviiiillvvnnhhlhhhnnynnhhnhniklviiiiiivaaiivviivik
mismvevin*ikyhqllkhqmi*qvkrnlkln*fvnf*fpilislkrmlriqfqnqlcis
wsinqkntfkmnwlqpstkrnclmny*rnhhkslvrenlvkl*skf*ekqxny*xird

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHN494 (VHN494Q) /CSM/VH/VHN4-D/VHN494Q.Seq.d/ 714 0.0
VHL684 (VHL684Q) /CSM/VH/VHL6-D/VHL684Q.Seq.d/ 714 0.0
CHO811 (CHO811Q) /CSM/CH/CHO8-A/CHO811Q.Seq.d/ 714 0.0
AHI356 (AHI356Q) /CSM/AH/AHI3-C/AHI356Q.Seq.d/ 714 0.0
VHM709 (VHM709Q) /CSM/VH/VHM7-A/VHM709Q.Seq.d/ 708 0.0
SHE856 (SHE856Q) /CSM/SH/SHE8-C/SHE856Q.Seq.d/ 706 0.0
SHE163 (SHE163Q) /CSM/SH/SHE1-C/SHE163Q.Seq.d/ 706 0.0
SHD218 (SHD218Q) /CSM/SH/SHD2-A/SHD218Q.Seq.d/ 706 0.0
CHO333 (CHO333Q) /CSM/CH/CHO3-B/CHO333Q.Seq.d/ 706 0.0
AHI233 (AHI233Q) /CSM/AH/AHI2-B/AHI233Q.Seq.d/ 706 0.0

own update 2003. 1. 2
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ444933) Dictyostelium discoideum cDNA clone:ddv57l24, 3' ... 714 0.0 3
(BJ443983) Dictyostelium discoideum cDNA clone:ddv54g22, 3' ... 714 0.0 3
(BJ384882) Dictyostelium discoideum cDNA clone:ddc51f04, 3' ... 714 0.0 3
(BJ405711) Dictyostelium discoideum cDNA clone:dds32m15, 3' ... 706 0.0 3
(BJ404913) Dictyostelium discoideum cDNA clone:dds30c06, 3' ... 706 0.0 3
(BJ352586) Dictyostelium discoideum cDNA clone:dda47a10, 3' ... 706 0.0 3
(X99669) Dictyostelium discoideum mRNA for dynamin homologue. 676 0.0 4
(BJ403278) Dictyostelium discoideum cDNA clone:dds24j13, 3' ... 676 0.0 4
(BJ344075) Dictyostelium discoideum cDNA clone:dda18i07, 3' ... 676 0.0 4
(BJ378987) Dictyostelium discoideum cDNA clone:ddc33n12, 3' ... 692 0.0 4
dna update 2008.11.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q94464) RecName: Full=Dynamin-A; &X99669_1(X99669|pid:none) 285 3e-75
BC044291_1(BC044291|pid:none) Xenopus laevis similar to dynamin ... 116 2e-24
AF061795_1(AF061795|pid:none) Homo sapiens dynamin-like protein ... 111 7e-23
BC107763_1(BC107763|pid:none) Homo sapiens dynamin 1-like, mRNA ... 111 7e-23
AK293290_1(AK293290|pid:none) Homo sapiens cDNA FLJ59840 complet... 111 7e-23
AK298568_1(AK298568|pid:none) Homo sapiens cDNA FLJ59948 complet... 111 7e-23
BC024590_1(BC024590|pid:none) Homo sapiens dynamin 1-like, mRNA ... 111 7e-23
BC046374_1(BC046374|pid:none) Xenopus laevis dynamin 1-like, mRN... 111 7e-23
AB169569_1(AB169569|pid:none) Macaca fascicularis brain cDNA, cl... 111 7e-23
AF000430_1(AF000430|pid:none) Homo sapiens dynamin-like protein ... 111 7e-23
protein update 2009. 7.16
PSORT

psg: 0.70 gvh: 0.43 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.06 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
40.0 %: cytoplasmic
12.0 %: mitochondrial

>> prediction for VHL684 is nuc

5' end seq. ID VHL684F
5' end seq.
>VHL684F.Seq
ATATAATCCATTAATATTAAATTAATTTCATTTTATTGCATGTAATATAATAATAAATAA
AATAAAATAAAATAAAATAAAATAAAATAAAAATTTAAATAAAAAATAAAAAGAATAAAG
AAAAATAAAACTCACAACACACAAATATTAAAAAAAACTATACTTATAAAAAAAAATAAA
AAATAAAAAATAAAAAAATAACCCACACACTCGAACTAATAATAAACAATAAACAAACAC
ACACACACATACATACACACACCAATAAACTAAATATATAGTAATAATAATAATAATAAA
TGGATCAATTAATCCCAGTTATTAATAAACTTCAAGATGTATTTAATACATTAGGATCAG
ACCCATTGGATTTACCACAAATCGTTGTTGTTGGTAGTCAATCTTCAGGTAAAAGTAGTG
TACTTGAAAATATAGTAGGTCGTGATTTTTTACCAAGAGGTTCTGGTATTGTAACAAGAA
GACCTTTGATTTTACAATTAACTCATTTACCAATTGCTGATGATGGATCACAAACTCAAG
AATGGGGTGAATTTTTACATAAACCAAATGATATGTTTTATGATTTCTCAGAGATTNNNN
NNNNNN
Length of 5' end seq. 606
3' end seq. ID VHL684Z
3' end seq.
>VHL684Z.Seq
NNNNNNNNNNTAAACCAAGTTCAATCCCACAAAATGGTCCAACCAATAATAATAATAATA
CCAATAATAATAATAGACAAGATCATCAACAAGGTTCTTTCTTTTCATCTTTTTTCAGAG
CTTCACCTGATCCATCTTTAGGTCAATATGGTGGTGCTAATAATAGTAATAATTCAAATA
ATCCAACATCACCAATTAATTCAAGTAGTAATAGCGGTAATAATTATAATACTTTTGGTG
GTCAACAATCATCATCTTCATCATCACAACAATTACAACAATCATCACAATCACAATATA
AAACTAGTTATAATAATAATAATAATAGTAGCAGCAATAATAGTAGTTATAATCGTTATC
AAGATGATTTCTATGGTAGAGGTGATAAATTAAATCAAGTACCATCAATTATTAAAGCAC
CAGATGATTTAACAAGTAAAGAGAAATTTGAAACTGAATTAATTCGTGAACTTTTAATTT
CCTATTTTAATATCGTTAAAAAGAATGTTAAGGATTCAGTTCCAAAATCAATTATGCATT
TCTTGGTCAATCAATCAAAAGAACACATTCAAAATGAATTGGTTGCAGCCCTCTACAAAG
AGGAATTGTTTGATGAATTATTAGAGGAATCACCACAAATCTCTAGTAAGAGAAAATCTT
GTAAAGCTATGATCGAAATTTTAAGAAAAGCAAANAAATTATTAANAAATTAGAGATTT
Length of 3' end seq. 719
Connected seq. ID VHL684P
Connected seq.
>VHL684P.Seq
ATATAATCCATTAATATTAAATTAATTTCATTTTATTGCATGTAATATAATAATAAATAA
AATAAAATAAAATAAAATAAAATAAAATAAAAATTTAAATAAAAAATAAAAAGAATAAAG
AAAAATAAAACTCACAACACACAAATATTAAAAAAAACTATACTTATAAAAAAAAATAAA
AAATAAAAAATAAAAAAATAACCCACACACTCGAACTAATAATAAACAATAAACAAACAC
ACACACACATACATACACACACCAATAAACTAAATATATAGTAATAATAATAATAATAAA
TGGATCAATTAATCCCAGTTATTAATAAACTTCAAGATGTATTTAATACATTAGGATCAG
ACCCATTGGATTTACCACAAATCGTTGTTGTTGGTAGTCAATCTTCAGGTAAAAGTAGTG
TACTTGAAAATATAGTAGGTCGTGATTTTTTACCAAGAGGTTCTGGTATTGTAACAAGAA
GACCTTTGATTTTACAATTAACTCATTTACCAATTGCTGATGATGGATCACAAACTCAAG
AATGGGGTGAATTTTTACATAAACCAAATGATATGTTTTATGATTTCTCAGAGATT----
------TAAACCAAGTTCAATCCCACAAAATGGTCCAACCAATAATAATAATAATACCAA
TAATAATAATAGACAAGATCATCAACAAGGTTCTTTCTTTTCATCTTTTTTCAGAGCTTC
ACCTGATCCATCTTTAGGTCAATATGGTGGTGCTAATAATAGTAATAATTCAAATAATCC
AACATCACCAATTAATTCAAGTAGTAATAGCGGTAATAATTATAATACTTTTGGTGGTCA
ACAATCATCATCTTCATCATCACAACAATTACAACAATCATCACAATCACAATATAAAAC
TAGTTATAATAATAATAATAATAGTAGCAGCAATAATAGTAGTTATAATCGTTATCAAGA
TGATTTCTATGGTAGAGGTGATAAATTAAATCAAGTACCATCAATTATTAAAGCACCAGA
TGATTTAACAAGTAAAGAGAAATTTGAAACTGAATTAATTCGTGAACTTTTAATTTCCTA
TTTTAATATCGTTAAAAAGAATGTTAAGGATTCAGTTCCAAAATCAATTATGCATTTCTT
GGTCAATCAATCAAAAGAACACATTCAAAATGAATTGGTTGCAGCCCTCTACAAAGAGGA
ATTGTTTGATGAATTATTAGAGGAATCACCACAAATCTCTAGTAAGAGAAAATCTTGTAA
AGCTATGATCGAAATTTTAAGAAAAGCAAANAAATTATTAANAAATTAGAGATTT
Length of connected seq. 1305
Full length Seq ID -
Full length Seq. -
Length of full length seq. -