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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHL670
Library VH
(Link to library)
Clone ID VHL670
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12401-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHL670 (VHL670Q) /CSM/VH/VHL6-C/VHL670Q.Seq.d/
ATTGTTGTTGGTATCCAAATAAACAAAACCAAACAAATAAAAATAATATTAATACAAAAA
AAAAAATANTAAAAAAAAATAATAATAATAATANCAATAATAAAAATAAANGATNGAAAA
TAATAAAGAAATTACNCTNGATNTAATCAAACTATTACCAAAAGCTGANCTTCATANACN
TTTAAANGGTTCAATTAAAATTTCAACATTATTAAAATTANCCAAANAACAAAANGTTGA
ATTACCANCCTATGATCAAAANGAATNGGCAAAATTAATTCNTAAANATGAAAATNGTXX
XXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
lllvsk*tkpnk*k*y*ykkknxkkk****xq**k*XXENNKEITLDXIKLLPKAXLHXX
LXGSIKISTLLKLXKXQXVELPXYDQXEXAKLIXKXEN---
Translated Amino Acid sequence (All Frames) 
Frame A:
ivvgiqinktkqikiiliqkkkx*kkiiiiixiikixdxk**rnyxxxnqtitks*xsxt
fkxfn*nfniikixqxtkx*itxl*skxxgkins*x*kx---


Frame B:
lllvsk*tkpnk*k*y*ykkknxkkk****xq**k*XXENNKEITLDXIKLLPKAXLHXX
LXGSIKISTLLKLXKXQXVELPXYDQXEXAKLIXKXEN---


Frame C:
ccwypnkqnqtnknnintkkkixkknnnnnxnnknkxxkiikklxxx*snyyqklxfixx
*xvqlkfqhy*nxpxnkxlnyxpmikxnxqn*fxxmkx---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL670 (VHL670Q) /CSM/VH/VHL6-C/VHL670Q.Seq.d/                        234   6e-61
VHN448 (VHN448Q) /CSM/VH/VHN4-B/VHN448Q.Seq.d/                        216   1e-55
VHQ492 (VHQ492Q) /CSM/VH/VHQ4-D/VHQ492Q.Seq.d/                        210   9e-54
VHP101 (VHP101Q) /CSM/VH/VHP1-A/VHP101Q.Seq.d/                        210   9e-54
VHM327 (VHM327Q) /CSM/VH/VHM3-B/VHM327Q.Seq.d/                        210   9e-54
VHB575 (VHB575Q) /CSM/VH/VHB5-D/VHB575Q.Seq.d/                        210   9e-54
VHQ204 (VHQ204Q) /CSM/VH/VHQ2-A/VHQ204Q.Seq.d/                        202   2e-51
VHP178 (VHP178Q) /CSM/VH/VHP1-D/VHP178Q.Seq.d/                        202   2e-51
VHI592 (VHI592Q) /CSM/VH/VHI5-D/VHI592Q.Seq.d/                        202   2e-51
VHD722 (VHD722Q) /CSM/VH/VHD7-A/VHD722Q.Seq.d/                        163   2e-39
own update 2003. 1. 2
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ425102) Dictyostelium discoideum cDNA clone:ddv54k18, 5' ...   234   1e-59  2
(BJ419024) Dictyostelium discoideum cDNA clone:ddv34e19, 5' ...   210   2e-52  2
(BJ427008) Dictyostelium discoideum cDNA clone:ddv61a01, 5' ...   208   7e-52  2
(BJ425908) Dictyostelium discoideum cDNA clone:ddv57p12, 5' ...   214   1e-51  1
(BJ427862) Dictyostelium discoideum cDNA clone:ddv63h24, 5' ...   210   2e-50  1
(BJ425304) Dictyostelium discoideum cDNA clone:ddv55f07, 5' ...   208   8e-50  1
(BJ427636) Dictyostelium discoideum cDNA clone:ddv63g02, 5' ...   202   5e-48  1
(BJ427274) Dictyostelium discoideum cDNA clone:ddv61k19, 5' ...   202   5e-48  1
(BJ423327) Dictyostelium discoideum cDNA clone:ddv48g23, 5' ...   202   5e-48  1
(BJ420075) Dictyostelium discoideum cDNA clone:ddv38l05, 5' ...   163   4e-36  1
dna update 2008.11.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54KF3) RecName: Full=Probable adenosine deaminase;          EC...    77   2e-13
CP001055_1146(CP001055|pid:none) Elusimicrobium minutum Pei191, ...    36   0.49
AE017340_359(AE017340|pid:none) Idiomarina loihiensis L2TR, comp...    35   1.1
CP001359_114(CP001359|pid:none) Anaeromyxobacter dehalogenans 2C...    33   4.1
CP000251_97(CP000251|pid:none) Anaeromyxobacter dehalogenans 2CP...    32   5.4
(A5I0I2) RecName: Full=Adenosine deaminase;          EC=3.5.4.4;...    32   9.2
CP000769_100(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, co...    32   9.2
CP000962_1049(CP000962|pid:none) Clostridium botulinum A3 str. L...    32   9.2
protein update 2009. 7.16
PSORT 

 psg: 0.75  gvh: 0.50  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.12  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VHL670 is cyt
5' end seq. ID VHL670F
5' end seq. 
>VHL670F.Seq
ATTGTTGTTGGTATCCAAATAAACAAAACCAAACAAATAAAAATAATATTAATACAAAAA
AAAAAATANTAAAAAAAAATAATAATAATAATANCAATAATAAAAATAAANGATNGAAAA
TAATAAAGAAATTACNCTNGATNTAATCAAACTATTACCAAAAGCTGANCTTCATANACN
TTTAAANGGTTCAATTAAAATTTCAACATTATTAAAATTANCCAAANAACAAAANGTTGA
ATTACCANCCTATGATCAAAANGAATNGGCAAAATTAATTCNTAAANATGAAAATNGTNN
NNNNNNNN
Length of 5' end seq. 308
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -