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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHL663
Library VH
(Link to library)
Clone ID VHL663
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15767-1
Original site URL
Representative seq. ID VHL663P
(Link to Original site)
Representative DNA sequence 
>VHL663 (VHL663Q) /CSM/VH/VHL6-C/VHL663Q.Seq.d/
ATTATTTTACCACTCATCAAAAAACAACAAATAAAAAATAAGAAAGTCTAAAATATTAAA
AGAATAAAAAAAATATATACAATAAAATAAAAAAACAAAATGTTCATTCAAAGAACATTT
TTAAAAGTTCTTACTCTTTTGAGTATAGTAACAGTTTTGGTCCATGGACAAACTCAACCA
AAAGATAAAATTACATTGAAGGCCGTAATTTATGATCAACACAAGTTTTATAATCCAAAT
TTCCAACCAAAAAATGAGGGAGAATTTGTTTTAACTAAGGGAATTGTCAAATCAGATATT
GATCAAGAAAAAAGAATTCCAGTTTTAAATAGTATGGATGCCAATGATTCTATAAATAAA
AAGGCAAGAATTAGTTGGCCAGATGGTTTTAAGTATTTTTTTGTAGATAACCAAGCTGGT
GATTCAGAATCTGCCAAATCTGGTAAAAATCTTCCAATTCAAAGAGATATCGAGTTAAAT
TGGAATGGAGAAGCATATGAATATAGTAATTCAAATTACTTCCCAATTAACGGACAAGGT
TTCAATGATGTAAGCTATCCAGTTXXXXXXXXXXTTCATACGCTACCGGTAAATGTGAAC
CAGATAGTTCACTTTGTAATGATAACAATATTTGTACCATTGATATTTGTGTCCATGAAG
GTATTCTCGATGGTCTACCACAAGGTAATTGTTCAAATACTCCAGTTGATTGTGGTGCCA
ATGATGAAGATAAATGTAAAACTTGGTCTTGTGATCCAACTAAAGGTGGCTGTCAATCAA
CCCCAGTCGTTTGTGAAGATAAAGGTAAATGTTTAGTTGGTACTTGTCAACCATCCACTG
GTCAATGTGAATACTCTGATAGAGTTTGTGATAATGGTGGTGCTTTCTGTGTTATTGGCC
AATGTGATCAAAGACTTGGTTGTTTAGTTTTCGATAGAGTTTGTTCATCTGATAATAGTA
GATGTGAAGAAGGTGTTTGTGTAAATGGTACTGAATCTGAAGAAGGTCATTGTAAATCTG
TTAAATATGACCCATTACCATTCAATTGTAATACTGGTGCTGTTGTTTCAACTGCTGTTA
TTGCTGGTTCTACTGTCGCTGGTGCTGTTGCTCTTGGTATTTTCCTTTATGGTGGTAAAA
AAGGTTAGACTATTGGAAAGACTCAAGAAATATTTCAATGGGCTCATCAAATAGTATCCA
TTGTATAAGAACAACAAACGGAAGAGGTGTCAACCCAAGTAGACGATCCAGCGCNNATNA
ACAAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
iilplikkqqiknkkv*nikrikkiytik*KNKMFIQRTFLKVLTLLSIVTVLVHGQTQP
KDKITLKAVIYDQHKFYNPNFQPKNEGEFVLTKGIVKSDIDQEKRIPVLNSMDANDSINK
KARISWPDGFKYFFVDNQAGDSESAKSGKNLPIQRDIELNWNGEAYEYSNSNYFPINGQG
FNDVSYPV---

---SYATGKCEPDSSLCNDNNICTIDICVHEGILDGLPQGNCSNTPVDCGANDEDKCKTW
SCDPTKGGCQSTPVVCEDKGKCLVGTCQPSTGQCEYSDRVCDNGGAFCVIGQCDQRLGCL
VFDRVCSSDNSRCEEGVCVNGTESEEGHCKSVKYDPLPFNCNTGAVVSTAVIAGSTVAGA
VALGIFLYGGKKG*tigktqeifqwahqivsiv*eqqteevstqvddpaxxnk
Translated Amino Acid sequence (All Frames) 
Frame A:
iilplikkqqiknkkv*nikrikkiytik*KNKMFIQRTFLKVLTLLSIVTVLVHGQTQP
KDKITLKAVIYDQHKFYNPNFQPKNEGEFVLTKGIVKSDIDQEKRIPVLNSMDANDSINK
KARISWPDGFKYFFVDNQAGDSESAKSGKNLPIQRDIELNWNGEAYEYSNSNYFPINGQG
FNDVSYPV---

---firyr*m*tr*ftl***qylyh*ylcp*rysrwsttr*lfkyss*lwcq**r*m*nl
vl*sn*rwlsinpsrl*r*r*mfswylstihwsm*il**sl**wwcflcywpm*sktwlf
sfr*slfi****m*rrclckwy*i*rrsl*ic*i*pitiql*ywcccfnccycwfycrwc
ccswyfplww*krldywkdsrnismgssnsihcirttngrgvnpsrrssaxxq

Frame B:
lfyhssknnk*kirkskilke*kkyiq*nkktkcsfkehf*kfllf*v**qfwsmdklnq
kiklh*rp*fmintsfiiqisnqkmrenlf*lrelsnqilikkkefqf*ivwmpmil*ik
rqelvgqmvlsifl*itklviqnlpnlvkifqfkeiss*igmekhmniviqitsqltdkv
smm*aiq---

---SYATGKCEPDSSLCNDNNICTIDICVHEGILDGLPQGNCSNTPVDCGANDEDKCKTW
SCDPTKGGCQSTPVVCEDKGKCLVGTCQPSTGQCEYSDRVCDNGGAFCVIGQCDQRLGCL
VFDRVCSSDNSRCEEGVCVNGTESEEGHCKSVKYDPLPFNCNTGAVVSTAVIAGSTVAGA
VALGIFLYGGKKG*tigktqeifqwahqivsiv*eqqteevstqvddpaxxnk

Frame C:
yftthqkttnkk*eslky*knkkniynkikkqnvhsknifkssysfeysnsfgpwtnstk
r*nyiegrnl*stqvl*skfptkk*gricfn*gncqiry*srkknssfk*ygcq*fyk*k
gkn*larwf*vffcr*psw*fricqiw*kssnskryrvklewrsi*i**fkllpn*rtrf
q*cklss---

---htlpvnvnqivhfvmitifvplifvsmkvfsmvyhkvivqilqlivvpmmkinvklg
lviqlkvavnqpqsfvkikvnv*lvlvnhplvnvntliefvimvvlsvllanvikdlvv*
fsiefvhliivdvkkvfv*mvlnlkkvivnllnmthyhsivilvllfqlllllvllslvl
lllvfsfmvvkkvrllerlkkyfnglik*yplyknnkrkrcqpk*tiqrxxtn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL663 (VHL663Q) /CSM/VH/VHL6-C/VHL663Q.Seq.d/                       2192   0.0
VHM522 (VHM522Q) /CSM/VH/VHM5-A/VHM522Q.Seq.d/                       1324   0.0
VHA321 (VHA321Q) /CSM/VH/VHA3-A/VHA321Q.Seq.d/                       1289   0.0
VHQ393 (VHQ393Q) /CSM/VH/VHQ3-D/VHQ393Q.Seq.d/                       1287   0.0
VHJ737 (VHJ737Q) /CSM/VH/VHJ7-B/VHJ737Q.Seq.d/                       1287   0.0
VHA622 (VHA622Q) /CSM/VH/VHA6-A/VHA622Q.Seq.d/                       1287   0.0
VHN636 (VHN636Q) /CSM/VH/VHN6-B/VHN636Q.Seq.d/                       1285   0.0
VHP613 (VHP613Q) /CSM/VH/VHP6-A/VHP613Q.Seq.d/                       1283   0.0
VHI218 (VHI218Q) /CSM/VH/VHI2-A/VHI218Q.Seq.d/                       1279   0.0
VHC809 (VHC809Q) /CSM/VH/VHC8-A/VHC809Q.Seq.d/                       1275   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ443938) Dictyostelium discoideum cDNA clone:ddv54m16, 3' ...  1354   0.0    1
(BJ444013) Dictyostelium discoideum cDNA clone:ddv54m24, 3' ...  1213   0.0    1
(BJ446801) Dictyostelium discoideum cDNA clone:ddv63j23, 3' ...  1136   0.0    3
(BJ446243) Dictyostelium discoideum cDNA clone:ddv62i04, 3' ...  1136   0.0    3
(BJ444364) Dictyostelium discoideum cDNA clone:ddv56k05, 3' ...  1136   0.0    2
(BJ443757) Dictyostelium discoideum cDNA clone:ddv54d04, 3' ...  1136   0.0    2
(BJ442594) Dictyostelium discoideum cDNA clone:ddv50j09, 3' ...  1136   0.0    3
(BJ441540) Dictyostelium discoideum cDNA clone:ddv47c06, 3' ...  1136   0.0    3
(BJ436757) Dictyostelium discoideum cDNA clone:ddv32k06, 3' ...  1136   0.0    3
(BJ436422) Dictyostelium discoideum cDNA clone:ddv31j06, 3' ...  1136   0.0    3
dna update 2008.11.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                406   e-112
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...   193   1e-51
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...   192   4e-49
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...   163   4e-39
(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                157   6e-37
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                114   7e-24
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 98   6e-19
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    85   5e-15
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...    82   3e-14
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...    78   8e-13
protein update 2009. 7.16
PSORT 

 psg: 0.84  gvh: 0.70  alm: 0.27  top: 0.37  tms: 0.13  mit: 0.40  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: endoplasmic reticulum
	 24.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  8.0 %: plasma membrane
	  4.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: peroxisomal
	  4.0 %: vacuolar

>> prediction for VHL663 is end
5' end seq. ID VHL663F
5' end seq. 
>VHL663F.Seq
ATTATTTTACCACTCATCAAAAAACAACAAATAAAAAATAAGAAAGTCTAAAATATTAAA
AGAATAAAAAAAATATATACAATAAAATAAAAAAACAAAATGTTCATTCAAAGAACATTT
TTAAAAGTTCTTACTCTTTTGAGTATAGTAACAGTTTTGGTCCATGGACAAACTCAACCA
AAAGATAAAATTACATTGAAGGCCGTAATTTATGATCAACACAAGTTTTATAATCCAAAT
TTCCAACCAAAAAATGAGGGAGAATTTGTTTTAACTAAGGGAATTGTCAAATCAGATATT
GATCAAGAAAAAAGAATTCCAGTTTTAAATAGTATGGATGCCAATGATTCTATAAATAAA
AAGGCAAGAATTAGTTGGCCAGATGGTTTTAAGTATTTTTTTGTAGATAACCAAGCTGGT
GATTCAGAATCTGCCAAATCTGGTAAAAATCTTCCAATTCAAAGAGATATCGAGTTAAAT
TGGAATGGAGAAGCATATGAATATAGTAATTCAAATTACTTCCCAATTAACGGACAAGGT
TTCAATGATGTAAGCTATCCAGTTNNNNNNNNNN
Length of 5' end seq. 574
3' end seq. ID VHL663Z
3' end seq. 
>VHL663Z.Seq
NNNNNNNNNNTTCATACGCTACCGGTAAATGTGAACCAGATAGTTCACTTTGTAATGATA
ACAATATTTGTACCATTGATATTTGTGTCCATGAAGGTATTCTCGATGGTCTACCACAAG
GTAATTGTTCAAATACTCCAGTTGATTGTGGTGCCAATGATGAAGATAAATGTAAAACTT
GGTCTTGTGATCCAACTAAAGGTGGCTGTCAATCAACCCCAGTCGTTTGTGAAGATAAAG
GTAAATGTTTAGTTGGTACTTGTCAACCATCCACTGGTCAATGTGAATACTCTGATAGAG
TTTGTGATAATGGTGGTGCTTTCTGTGTTATTGGCCAATGTGATCAAAGACTTGGTTGTT
TAGTTTTCGATAGAGTTTGTTCATCTGATAATAGTAGATGTGAAGAAGGTGTTTGTGTAA
ATGGTACTGAATCTGAAGAAGGTCATTGTAAATCTGTTAAATATGACCCATTACCATTCA
ATTGTAATACTGGTGCTGTTGTTTCAACTGCTGTTATTGCTGGTTCTACTGTCGCTGGTG
CTGTTGCTCTTGGTATTTTCCTTTATGGTGGTAAAAAAGGTTAGACTATTGGAAAGACTC
AAGAAATATTTCAATGGGCTCATCAAATAGTATCCATTGTATAAGAACAACAAACGGAAG
AGGTGTCAACCCAAGTAGACGATCCAGCGCNNATNAACAAAT
Length of 3' end seq. 702
Connected seq. ID VHL663P
Connected seq. 
>VHL663P.Seq
ATTATTTTACCACTCATCAAAAAACAACAAATAAAAAATAAGAAAGTCTAAAATATTAAA
AGAATAAAAAAAATATATACAATAAAATAAAAAAACAAAATGTTCATTCAAAGAACATTT
TTAAAAGTTCTTACTCTTTTGAGTATAGTAACAGTTTTGGTCCATGGACAAACTCAACCA
AAAGATAAAATTACATTGAAGGCCGTAATTTATGATCAACACAAGTTTTATAATCCAAAT
TTCCAACCAAAAAATGAGGGAGAATTTGTTTTAACTAAGGGAATTGTCAAATCAGATATT
GATCAAGAAAAAAGAATTCCAGTTTTAAATAGTATGGATGCCAATGATTCTATAAATAAA
AAGGCAAGAATTAGTTGGCCAGATGGTTTTAAGTATTTTTTTGTAGATAACCAAGCTGGT
GATTCAGAATCTGCCAAATCTGGTAAAAATCTTCCAATTCAAAGAGATATCGAGTTAAAT
TGGAATGGAGAAGCATATGAATATAGTAATTCAAATTACTTCCCAATTAACGGACAAGGT
TTCAATGATGTAAGCTATCCAGTT----------TTCATACGCTACCGGTAAATGTGAAC
CAGATAGTTCACTTTGTAATGATAACAATATTTGTACCATTGATATTTGTGTCCATGAAG
GTATTCTCGATGGTCTACCACAAGGTAATTGTTCAAATACTCCAGTTGATTGTGGTGCCA
ATGATGAAGATAAATGTAAAACTTGGTCTTGTGATCCAACTAAAGGTGGCTGTCAATCAA
CCCCAGTCGTTTGTGAAGATAAAGGTAAATGTTTAGTTGGTACTTGTCAACCATCCACTG
GTCAATGTGAATACTCTGATAGAGTTTGTGATAATGGTGGTGCTTTCTGTGTTATTGGCC
AATGTGATCAAAGACTTGGTTGTTTAGTTTTCGATAGAGTTTGTTCATCTGATAATAGTA
GATGTGAAGAAGGTGTTTGTGTAAATGGTACTGAATCTGAAGAAGGTCATTGTAAATCTG
TTAAATATGACCCATTACCATTCAATTGTAATACTGGTGCTGTTGTTTCAACTGCTGTTA
TTGCTGGTTCTACTGTCGCTGGTGCTGTTGCTCTTGGTATTTTCCTTTATGGTGGTAAAA
AAGGTTAGACTATTGGAAAGACTCAAGAAATATTTCAATGGGCTCATCAAATAGTATCCA
TTGTATAAGAACAACAAACGGAAGAGGTGTCAACCCAAGTAGACGATCCAGCGCNNATNA
ACAAAT
Length of connected seq. 1256
Full length Seq ID -
Full length Seq. -
Length of full length seq. -