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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHL643
Library VH
(Link to library)
Clone ID VHL643
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11580-1
Original site URL
Representative seq. ID VHL643P
(Link to Original site)
Representative DNA sequence 
>VHL643 (VHL643Q) /CSM/VH/VHL6-B/VHL643Q.Seq.d/
AACAAATATTAGATAAAAACGATCGTATTATTATATAATTTTCATAATATATATATATAA
ATCTTTTTATTCTTTTAATTTTTTCAAAAACCAAAAAAAAAAXXXXXXXXXXGGAGATGG
AAGAAGAAGCTTTCCTCGAAGAGTTAAAGAATGCCGAAGACGATGAAGAATCTGATCTCG
ATGAAGAGAACGAAGCACTCTATGACGAAATCCAAGAGAAGAAACACGAACTTCGTATCA
ATCATCAAATTAAAGACTCTTCAAAACCACAATTATCCAAAGGTCGTAGAGGTATCGATA
CTAAAGAGATGGCTTCTCATTTGAAATCTATGCATCATGAAGATGATGAAATCGGTGATA
TCATCCAAAGTGTACGTGATCATTCCAAGTCTCGTATCTCTGGTAAGAAACGTTCTCGTT
CAGCCTCACGTTCAGACTCTCAAGCTCCAACCTCTGAAGAAAGAGGTCTCTCTCTCAATC
GTTCAAAATCACGTCAACGTTCTACCACCAGAATCGCTTCTC
sequence update 2002.10.25
Translated Amino Acid sequence 
tnir*KRSYYYIIFIIYIYKSFYSFNFFKNQKK---

---EMEEEAFLEELKNAEDDEESDLDEENEALYDEIQEKKHELRINHQIKDSSKPQLSKG
RRGIDTKEMASHLKSMHHEDDEIGDIIQSVRDHSKSRISGKKRSRSASRSDSQAPTSEER
GLSLNRSKSRQRSTTRIAS
Translated Amino Acid sequence (All Frames) 
Frame A:
nky*iktivllynfhniyi*iflff*ffqkpkkk---

---gdgrrsfprrvkecrrr*ri*sr*rerstl*rnpreetrtsyqssn*rlfkttiiqr
s*ryry*rdgfsfeiyas*r**nr*yhpkct*sfqvsylw*etfsfsltfrlsssnl*rk
rslsqsfkitstfyhqnrf

Frame B:
tnir*KRSYYYIIFIIYIYKSFYSFNFFKNQKK---

---EMEEEAFLEELKNAEDDEESDLDEENEALYDEIQEKKHELRINHQIKDSSKPQLSKG
RRGIDTKEMASHLKSMHHEDDEIGDIIQSVRDHSKSRISGKKRSRSASRSDSQAPTSEER
GLSLNRSKSRQRSTTRIAS

Frame C:
qildkndriii*fs*yiyinlfillifsktkkk---

---rwkkklssks*rmpktmknlismkrtkhsmtkskrrntnfvsiiklktlqnhnypkv
vevsilkrwlli*nlcimkmmksvisskvyviipslvslvrnvlvqphvqtlklqplkke
vslsivqnhvnvlppesll
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL643 (VHL643Q) /CSM/VH/VHL6-B/VHL643Q.Seq.d/                        813   0.0
VHK275 (VHK275Q) /CSM/VH/VHK2-D/VHK275Q.Seq.d/                        813   0.0
VHJ193 (VHJ193Q) /CSM/VH/VHJ1-D/VHJ193Q.Seq.d/                        813   0.0
VHA843 (VHA843Q) /CSM/VH/VHA8-B/VHA843Q.Seq.d/                        813   0.0
VHA814 (VHA814Q) /CSM/VH/VHA8-A/VHA814Q.Seq.d/                        813   0.0
CHN390 (CHN390Q) /CSM/CH/CHN3-D/CHN390Q.Seq.d/                        813   0.0
VHN175 (VHN175Q) /CSM/VH/VHN1-D/VHN175Q.Seq.d/                        807   0.0
VHB452 (VHB452Q) /CSM/VH/VHB4-C/VHB452Q.Seq.d/                        805   0.0
VHK128 (VHK128Q) /CSM/VH/VHK1-B/VHK128Q.Seq.d/                        801   0.0
VHL275 (VHL275Q) /CSM/VH/VHL2-D/VHL275Q.Seq.d/                        799   0.0
own update 2004. 5.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ443839) Dictyostelium discoideum cDNA clone:ddv54e12, 3' ...   809   0.0    1
(BJ443063) Dictyostelium discoideum cDNA clone:ddv51e20, 3' ...   809   0.0    1
(BJ442432) Dictyostelium discoideum cDNA clone:ddv49i23, 3' ...   809   0.0    1
(BJ436816) Dictyostelium discoideum cDNA clone:ddv32f12, 3' ...   809   0.0    1
(BJ436761) Dictyostelium discoideum cDNA clone:ddv32l04, 3' ...   809   0.0    1
(BJ384251) Dictyostelium discoideum cDNA clone:ddc48d23, 3' ...   809   0.0    1
(BJ444900) Dictyostelium discoideum cDNA clone:ddv57e19, 3' ...   807   0.0    1
(BJ437223) Dictyostelium discoideum cDNA clone:ddv33h14, 3' ...   801   0.0    1
(BJ442908) Dictyostelium discoideum cDNA clone:ddv51g07, 3' ...   797   0.0    1
(BJ443691) Dictyostelium discoideum cDNA clone:ddv53e20, 3' ...   569   0.0    2
dna update 2008.11.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54N72) RecName: Full=Probable nucleolar GTP-binding protein 1;      169   3e-41
CP001393_799(CP001393|pid:none) Anaerocellum thermophilum DSM 67...    33   3.3
AM910991_451(AM910991|pid:none) Plasmodium knowlesi strain H chr...    33   5.6
CP000679_2597(CP000679|pid:none) Caldicellulosiruptor saccharoly...    32   9.5
protein update 2009. 3.15
PSORT 

 psg: 0.94  gvh: 0.19  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall

>> prediction for VHL643 is nuc
5' end seq. ID VHL643F
5' end seq. 
>VHL643F.Seq
AACAAATATTAGATAAAAACGATCGTATTATTATATAATTTTCATAATATATATATATAA
ATCTTTTTATTCTTTTAATTTTTTCAAAAACCAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 112
3' end seq. ID VHL643Z
3' end seq. 
>VHL643Z.Seq
NNNNNNNNNNGGAGATGGAAGAAGAAGCTTTCCTCGAAGAGTTAAAGAATGCCGAAGACG
ATGAAGAATCTGATCTCGATGAAGAGAACGAAGCACTCTATGACGAAATCCAAGAGAAGA
AACACGAACTTCGTATCAATCATCAAATTAAAGACTCTTCAAAACCACAATTATCCAAAG
GTCGTAGAGGTATCGATACTAAAGAGATGGCTTCTCATTTGAAATCTATGCATCATGAAG
ATGATGAAATCGGTGATATCATCCAAAGTGTACGTGATCATTCCAAGTCTCGTATCTCTG
GTAAGAAACGTTCTCGTTCAGCCTCACGTTCAGACTCTCAAGCTCCAACCTCTGAAGAAA
GAGGTCTCTCTCTCAATCGTTCAAAATCACGTCAACGTTCTACCACCAGAATCGCTTCTC
Length of 3' end seq. 420
Connected seq. ID VHL643P
Connected seq. 
>VHL643P.Seq
AACAAATATTAGATAAAAACGATCGTATTATTATATAATTTTCATAATATATATATATAA
ATCTTTTTATTCTTTTAATTTTTTCAAAAACCAAAAAAAAAA----------GGAGATGG
AAGAAGAAGCTTTCCTCGAAGAGTTAAAGAATGCCGAAGACGATGAAGAATCTGATCTCG
ATGAAGAGAACGAAGCACTCTATGACGAAATCCAAGAGAAGAAACACGAACTTCGTATCA
ATCATCAAATTAAAGACTCTTCAAAACCACAATTATCCAAAGGTCGTAGAGGTATCGATA
CTAAAGAGATGGCTTCTCATTTGAAATCTATGCATCATGAAGATGATGAAATCGGTGATA
TCATCCAAAGTGTACGTGATCATTCCAAGTCTCGTATCTCTGGTAAGAAACGTTCTCGTT
CAGCCTCACGTTCAGACTCTCAAGCTCCAACCTCTGAAGAAAGAGGTCTCTCTCTCAATC
GTTCAAAATCACGTCAACGTTCTACCACCAGAATCGCTTCTC
Length of connected seq. 512
Full length Seq ID -
Full length Seq. -
Length of full length seq. -