>AFB707 (AFB707Q) /CSM/AF/AFB7-A/AFB707Q.Seq.d/
XXXXXXXXXXCACTCAAAGAGATTAAACAATTCATTCTTGATGAATGTGATACCATGCTC
GAATCATTGGATATGAGAAAGGATGTACAAAAGATCTTCAAACTCATCCCAGCCAACAAA
CAAGTTATGATGTTTTCAGCTACCCTCTCTGATACCATTCGTCCAATCTGTAAGAAGTTT
ATGAACAATCCATTGGAAATCTACATCAATGATGGTAGTAAACTCACTCTCCATGGTCTT
CAACAATACTACGTACCAATCACTGAAGAACAAAAGAATAAAAAACTCATTGAACTCTTG
GATTCATTAGACTTTAATCAAGCCGTTATTTTCGTCAAATCTGTTAGACGTGCTGATGCC
TTAAATAAGATCCTCCAAGATATTGGTTTCCCATCCATCTGTATTCATCGTGACCTCGAT
CAAAAGGATCGTATCGAACAATACCGTAAATTCAAAAACTTTGAATCTCGTATCATGGTT
GCCACTAATATCTTCGGTCGTGGTATCGATATTGAACGTGTCAATGTCGTCATCAACTAC
GATATGGCTGAATCTG

---LKEIKQFILDECDTMLESLDMRKDVQKIFKLIPANKQVMMFSATLSDTIRPICKKFM
NNPLEIYINDGSKLTLHGLQQYYVPITEEQKNKKLIELLDSLDFNQAVIFVKSVRRADAL
NKILQDIGFPSICIHRDLDQKDRIEQYRKFKNFESRIMVATNIFGRGIDIERVNVVINYD
MAES

Frame A:
---tqrd*tihs**m*yhariigyekgctkdlqthpsqqtsydvfsypl*yhssnl*evy
eqsignlhq*w**thspwsstilrtnh*rtke*kth*tlgfirl*ssryfrqic*tc*cl
k*dpprywfpihlyss*prskgsyrtip*iqkl*isyhgch*ylrswyry*tcqcrhqlr
yg*i


Frame B:
---LKEIKQFILDECDTMLESLDMRKDVQKIFKLIPANKQVMMFSATLSDTIRPICKKFM
NNPLEIYINDGSKLTLHGLQQYYVPITEEQKNKKLIELLDSLDFNQAVIFVKSVRRADAL
NKILQDIGFPSICIHRDLDQKDRIEQYRKFKNFESRIMVATNIFGRGIDIERVNVVINYD
MAES


Frame C:
---skrlnnsflmnvipcsnhwi*ermykrssnssqptnkl*cfqlpslipfvqsvrsl*
tihwkstsmmvvnslsmvfnnttyqslknkriknslnswih*tlikplfssnlldvlmp*
irsskilvshpsvfivtsikrivsnntvnsktlnlvswlplissvvvsilnvsmssstti
wlnl

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFB707 (AFB707Q) /CSM/AF/AFB7-A/AFB707Q.Seq.d/                       1082   0.0
VFE359 (VFE359Q) /CSM/VF/VFE3-C/VFE359Q.Seq.d/                       1074   0.0
VFD348 (VFD348Q) /CSM/VF/VFD3-B/VFD348Q.Seq.d/                       1074   0.0
VFA442 (VFA442Q) /CSM/VF/VFA4-B/VFA442Q.Seq.d/                       1074   0.0
SFL133 (SFL133Q) /CSM/SF/SFL1-B/SFL133Q.Seq.d/                       1074   0.0
SFF569 (SFF569Q) /CSM/SF/SFF5-C/SFF569Q.Seq.d/                       1074   0.0
FC-AI06 (FC-AI06Q) /CSM/FC/FC-AI/FC-AI06Q.Seq.d/                     1074   0.0
CFK190 (CFK190Q) /CSM/CF/CFK1-D/CFK190Q.Seq.d/                       1074   0.0
CFF489 (CFF489Q) /CSM/CF/CFF4-D/CFF489Q.Seq.d/                       1074   0.0
AFO646 (AFO646Q) /CSM/AF/AFO6-B/AFO646Q.Seq.d/                       1074   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL408654|AL408654.1 T7 end of clone AV0AA009H09 of library AV0AA from strain CBS 379 of Saccharomyces exiguus.    46  3e-12  4
AX488925|AX488925.1 Sequence 6225 from Patent WO02053728.         40  6e-10  5
BF071471|BF071471.1 st59b09.y1 Gm-c1053 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1053-857 5' similar to TR:Q9ZS06 Q9ZS06 RNA HELICASE ;, mRNA sequence.    56  9e-09  2
AW759959|AW759959.1 sl56c07.y1 Gm-c1027 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1027-5317 5' similar to TR:Q9ZS06 Q9ZS06 RNA HELICASE ;, mRNA sequence.    56  1e-08  2
BI742220|BI742220.1 kt91h02.y1 Strongyloides ratti L3 adult pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:HE47_CAEEL Q18212 PROBABLE ATP-DEPENDENT RNA HELICASE P47 HOMOLOG. [1] ;, mRNA sequence.    38  4e-08  4
BI974435|BI974435.1 saj01e10.y1 Gm-c1065 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1065-9068 5' similar to TR:Q9ZS06 Q9ZS06 RNA HELICASE ;, mRNA sequence.    52  1e-07  2
Z74132|Z74132.1 S.cerevisiae chromosome IV reading frame ORF YDL084w.    42  7e-07  4
AI966749|AI966749.1 sc57c05.y1 Gm-c1016 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1016-513 5' similar to TR:O13792 O13792 PUTATIVE ATP-DEPENDENT RNA HELICASE C17G6.14C. ;, mRNA sequence.    48  1e-06  2
AK067431|AK067431.1 Oryza sativa (japonica cultivar-group) cDNA clone:J013107H03, full insert sequence.    40  1e-06  3
AZ926120|AZ926120.1 476.dio41d01.s1 Saccharomyces castellii NRRL Y-12630 Saccharomyces castellii genomic clone 476.dio41d01.s1, DNA sequence.    44  3e-06  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O13792) RecName: Full=ATP-dependent RNA helicase uap56;        ...   252   5e-66
D89270_1(D89270|pid:none) Schizosaccharomyces pombe mRNA, partia...   252   5e-66
AJ428513_1(AJ428513|pid:none) Chironomus tentans mRNA for HEL pr...   249   4e-65
AJ010466_1(AJ010466|pid:none) Arabidopsis thaliana mRNA for DEAD...   249   4e-65
AM920437_2400(AM920437|pid:none) Penicillium chrysogenum Wiscons...   248   6e-65
(A1DL85) RecName: Full=ATP-dependent RNA helicase sub2;         ...   248   6e-65
(A1CMQ7) RecName: Full=ATP-dependent RNA helicase sub2;         ...   248   6e-65
(Q1DI07) RecName: Full=ATP-dependent RNA helicase SUB2;         ...   248   7e-65
GM694469_1(GM694469|pid:none) Sequence 25 from Patent EP1953235.      248   1e-64
GM694505_1(GM694505|pid:none) Sequence 61 from Patent EP1953235....   247   1e-64

 psg: 0.75  gvh: 0.46  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for AFB707 is cyt

>AFB707Z.Seq
----------CACTCAAAGAGATTAAACAATTCATTCTTGATGAATGTGATACCATGCTC
GAATCATTGGATATGAGAAAGGATGTACAAAAGATCTTCAAACTCATCCCAGCCAACAAA
CAAGTTATGATGTTTTCAGCTACCCTCTCTGATACCATTCGTCCAATCTGTAAGAAGTTT
ATGAACAATCCATTGGAAATCTACATCAATGATGGTAGTAAACTCACTCTCCATGGTCTT
CAACAATACTACGTACCAATCACTGAAGAACAAAAGAATAAAAAACTCATTGAACTCTTG
GATTCATTAGACTTTAATCAAGCCGTTATTTTCGTCAAATCTGTTAGACGTGCTGATGCC
TTAAATAAGATCCTCCAAGATATTGGTTTCCCATCCATCTGTATTCATCGTGACCTCGAT
CAAAAGGATCGTATCGAACAATACCGTAAATTCAAAAACTTTGAATCTCGTATCATGGTT
GCCACTAATATCTTCGGTCGTGGTATCGATATTGAACGTGTCAATGTCGTCATCAACTAC
GATATGGCTGAATCTG