AFO507 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

AFO507
Library	AF (Link to library)
Clone ID	AFO507 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15540-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/AF/AFO5-A/AFO507Q.Seq.d/
Representative seq. ID	AFO507P (Link to Original site)
Representative DNA sequence	>AFO507 (AFO507Q) /CSM/AF/AFO5-A/AFO507Q.Seq.d/ ATAGCAACAACACTAATAATAATAATAATAATAATAATAATAATAATAATAATCAACAAC AACAATTATCATCGAACCAAAACTCATCACCATTGATTTACTCTGTTCCATCCTACTATG TTCCAAATTATGGTGTTGTTCTCTCTGCTCCAATGAAAGGTAATTCAAGTTCTTCTATTT TACCACCACAAGCTTGGCCACAAAATAATAATAACAACAATGGTAATAGCAATAGCAACA ATGGAAACAATAATGCCAGTGGTTTCTCTGATTTCATGTTCAATGGCTCTAACATTGACT ACAACTCAATCATGAACAATAATAATAATAATAATAATAATAATAACAACAACAACAACA ACAACAACAACAACAACAACAATAGTAATAATAACAACAACAACAGCAACAACAACAACG GCAACAATGGTGGTATGNTTAATGGAGGATTTGTTAACAATAACAACCATAATAATAATA ACAACAACAATAATAACAATGGTAACTTAAACTTCCACAACTTTTTACAAXXXXXXXXXX GTTTAGATCCATCAAGTTTACAAAAACAAAATGAAATTAATCCACCAATTTCCGTTCGTT CCAATGTCGTTTTCTTTGAACCATACTTGGCCGGTGAACCAGGCAGACACAAGGCATGTT GGAATCTCCTCGAACCAATGCATAGAAACTACTACCAACCAATCCAATTCAAATTACCAT CATTCCCAGACACTTCATTACCAATCACACAAATCGATGATAAAACCGGTATCTTTGATT CTCAACGTTTCCTCGCATTCAATAATCCACAAGCCATGAGTAAATATGAATCCTATCGTA TCTACATTCATCCTTCACTCGGTTACAGTGGTAATGCAAAGAGATTCAAACAACAACCAG ATGTCAATGAGAAAGCTTTGATTTTGGATGGCAATGTCTACGATGGACATTTAAATCCAA TTTACAACTGTAAAATCTGTACCGAATATTATCAAACCAAATCTTACTTTTCCGCTAATC CACATGCAAAAGGTAAAGTTCTTTTGGTCAAAAATAACATATTAACTCGTGTCAAAGATG GTGGTTTCACTCTCTCCTTAAAGCCAATGTGTTGCAGTGGTCATAACTCTCATATCCCAC TCTACTTTCACTTTACCCTTACAAATCCACTCACAAATGAAGTTGTACTCCAATCACTCA TTAATGTTAATGTTAAGCAATGGAAAAAATCAGTTCCAAATAAATCGAAAAAACAAAGAT TNNAATAAATAATNAATAATA
sequence update	2001. 6. 1
Translated Amino Acid sequence	SNNTNNNNNNNNNNNNNQQQQLSSNQNSSPLIYSVPSYYVPNYGVVLSAPMKGNSSSSIL PPQAWPQNNNNNNGNSNSNNGNNNASGFSDFMFNGSNIDYNSIMNNNNNNNNNNNNNNNN NNNNNNNSNNNNNNSNNNNGNNGGMXNGGFVNNNNHNNNNNNNNNNGNLNFHNFLQ--- ---LDPSSLQKQNEINPPISVRSNVVFFEPYLAGEPGRHKACWNLLEPMHRNYYQPIQFK LPSFPDTSLPITQIDDKTGIFDSQRFLAFNNPQAMSKYESYRIYIHPSLGYSGNAKRFKQ QPDVNEKALILDGNVYDGHLNPIYNCKICTEYYQTKSYFSANPHAKGKVLLVKNNILTRV KDGGFTLSLKPMCCSGHNSHIPLYFHFTLTNPLTNEVVLQSLINVNVKQWKKSVPNKSKK QRXX*ixnn
Translated Amino Acid sequence (All Frames)	Frame A: iattliiiiiiiiiiiiinnnnyhrtkthhhftlfhptmfqimvlfsllqkviqvllf yhhklghkiiittmviaiatmetimpvvsliscsmaltltttqstiiiiiiiiittttt tttttttiviittttattttatmvvxlmedlltittiiiitttiitmvttsttfy--- ---vihqvyknkmklihqfpfvpmsfslnhtwpvnqadtrhvgissnqcietttnqsns nyhhsqtlhyqshksmikpvslilnvsshsiihkpvnmnpivstfilhsvtvvmqrdsn nnqmsmrklfwmamstmdiiqfttvksvpniikpnltfplihmqkvkffwskitylv skmvvslspsqcvavvitlishstftlplqihsqmklysnhslmlmlsngknqfqinrk nkdxnkxii Frame B: qqh************stttiiiepklitidllcsillcsklwccslcsnerfkffyf tttslatk*qqwqqqwkqcqwflfhvqwlhlqlnheq******qqqqq qqqqqqq*qqqqqqqqrqqwwyxwricqqp**qqqqwlklpqlft--- ---frsikftktknstnfrsfqcrfltilgrtrqtqgmlesprtnakllptnpiq itiiprhfitnhtnr*nrylfstfpriqstsheiilsylhssftrlqwckeiqt ttrcqesfdfgwqclrwtfksnlqlnlyrilsnqillfrstckrssfgqkhinsc qrwwfhsllkanvlqwslsyptllslypyksthksctpithccamekisskiek tkixinnx Frame C: SNNTNNNNNNNNNNNNNQQQQLSSNQNSSPLIYSVPSYYVPNYGVVLSAPMKGNSSSSIL PPQAWPQNNNNNNGNSNSNNGNNNASGFSDFMFNGSNIDYNSIMNNNNNNNNNNNNNNNN NNNNNNNSNNNNNNSNNNNGNNGGMXNGGFVNNNNHNNNNNNNNNNGNLNFHNFLQ--- ---LDPSSLQKQNEINPPISVRSNVVFFEPYLAGEPGRHKACWNLLEPMHRNYYQPIQFK LPSFPDTSLPITQIDDKTGIFDSQRFLAFNNPQAMSKYESYRIYIHPSLGYSGNAKRFKQ QPDVNEKALILDGNVYDGHLNPIYNCKICTEYYQTKSYFSANPHAKGKVLLVKNNILTRV KDGGFTLSLKPMCCSGHNSHIPLYFHFTLTNPLTNEVVLQSLINVNVKQWKKSVPNKSKK QRXX*ixnn
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value AFO507 (AFO507Q) /CSM/AF/AFO5-A/AFO507Q.Seq.d/ 1471 0.0 VHJ792 (VHJ792Q) /CSM/VH/VHJ7-D/VHJ792Q.Seq.d/ 1425 0.0 VFA838 (VFA838Q) /CSM/VF/VFA8-B/VFA838Q.Seq.d/ 1407 0.0 CHD534 (CHD534Q) /CSM/CH/CHD5-B/CHD534Q.Seq.d/ 1405 0.0 CHR159 (CHR159Q) /CSM/CH/CHR1-C/CHR159Q.Seq.d/ 1366 0.0 CFJ232 (CFJ232Q) /CSM/CF/CFJ2-B/CFJ232Q.Seq.d/ 1336 0.0 CHO693 (CHO693Q) /CSM/CH/CHO6-D/CHO693Q.Seq.d/ 1318 0.0 SHL560 (SHL560Q) /CSM/SH/SHL5-C/SHL560Q.Seq.d/ 1312 0.0 SHA665 (SHA665Q) /CSM/SH/SHA6-C/SHA665Q.Seq.d/ 1261 0.0 SHJ550 (SHJ550Q) /CSM/SH/SHJ5-C/SHJ550Q.Seq.d/ 1231 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC128719\|AC128719.4 Rattus norvegicus clone CH230-89G7, * SEQUENCING IN PROGRESS , 2 unordered pieces. 54 0.004 1 AC098574\|AC098574.1 Oryza sativa chromosome 5 clone OJ1781E07, SEQUENCING IN PROGRESS , 5 ordered pieces. 38 0.058 5 AC121376\|AC121376.4 Rattus norvegicus clone CH230-461B14, SEQUENCING IN PROGRESS , 1 ordered piece. 54 0.16 5 U32174\|U32174.1 Dictyostelium discoideum spore lysis A (splA) gene, complete cds. 42 0.26 3 AL409150\|AL409150.1 T3 end of clone AV0AA013A06 of library AV0AA from strain CBS 379 of Saccharomyces exiguus. 48 0.27 1 BX548028\|BX548028.2 Zebrafish DNA sequence SEQUENCING IN PROGRESS * from clone CH211-260H24. 48 0.27 1 AC130025\|AC130025.4 Rattus norvegicus clone CH230-44M13, WORKING DRAFT SEQUENCE, 2 unordered pieces. 48 0.27 1 BX231032\|BX231032.1 Danio rerio genomic clone DKEY-254O18, genomic survey sequence. 44 0.55 2 AC116918\|AC116918.3 Dictyostelium discoideum chromosome 2 map 6143698-6163521 strain AX4, complete sequence. 48 0.77 2 AC129710\|AC129710.4 Rattus norvegicus clone CH230-2O7, * SEQUENCING IN PROGRESS *, 4 unordered pieces. 38 0.94 4
dna update	2003. 9.16
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value BA000040_1129(BA000040\|pid:none) Bradyrhizobium japonicum USDA 1... 35 7.1 AF438165_8(AF438165\|pid:none) Camelpox virus M-96 from Kazakhsta... 34 9.3 AY698061_1(AY698061\|pid:none) Schistosoma mansoni nuclear recept... 34 9.3
protein update	2008.11.27
PSORT	psg: 0.67 gvh: 0.48 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.38 mip: 0.00 nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 32.0 %: nuclear 28.0 %: mitochondrial 28.0 %: cytoplasmic 4.0 %: cytoskeletal 4.0 %: plasma membrane 4.0 %: peroxisomal >> prediction for AFO507 is nuc
5' end seq. ID	AFO507F
5' end seq.	>AFO507F.Seq ATAGCAACAACACTAATAATAATAATAATAATAATAATAATAATAATAATAATCAACAAC AACAATTATCATCGAACCAAAACTCATCACCATTGATTTACTCTGTTCCATCCTACTATG TTCCAAATTATGGTGTTGTTCTCTCTGCTCCAATGAAAGGTAATTCAAGTTCTTCTATTT TACCACCACAAGCTTGGCCACAAAATAATAATAACAACAATGGTAATAGCAATAGCAACA ATGGAAACAATAATGCCAGTGGTTTCTCTGATTTCATGTTCAATGGCTCTAACATTGACT ACAACTCAATCATGAACAATAATAATAATAATAATAATAATAATAACAACAACAACAACA ACAACAACAACAACAACAACAATAGTAATAATAACAACAACAACAGCAACAACAACAACG GCAACAATGGTGGTATGNTTAATGGAGGATTTGTTAACAATAACAACCATAATAATAATA ACAACAACAATAATAACAATGGTAACTTAAACTTCCACAACTTTTTACAA----------
Length of 5' end seq.	530
3' end seq. ID	AFO507Z
3' end seq.	>AFO507Z.Seq ----------GTTTAGATCCATCAAGTTTACAAAAACAAAATGAAATTAATCCACCAATT TCCGTTCGTTCCAATGTCGTTTTCTTTGAACCATACTTGGCCGGTGAACCAGGCAGACAC AAGGCATGTTGGAATCTCCTCGAACCAATGCATAGAAACTACTACCAACCAATCCAATTC AAATTACCATCATTCCCAGACACTTCATTACCAATCACACAAATCGATGATAAAACCGGT ATCTTTGATTCTCAACGTTTCCTCGCATTCAATAATCCACAAGCCATGAGTAAATATGAA TCCTATCGTATCTACATTCATCCTTCACTCGGTTACAGTGGTAATGCAAAGAGATTCAAA CAACAACCAGATGTCAATGAGAAAGCTTTGATTTTGGATGGCAATGTCTACGATGGACAT TTAAATCCAATTTACAACTGTAAAATCTGTACCGAATATTATCAAACCAAATCTTACTTT TCCGCTAATCCACATGCAAAAGGTAAAGTTCTTTTGGTCAAAAATAACATATTAACTCGT GTCAAAGATGGTGGTTTCACTCTCTCCTTAAAGCCAATGTGTTGCAGTGGTCATAACTCT CATATCCCACTCTACTTTCACTTTACCCTTACAAATCCACTCACAAATGAAGTTGTACTC CAATCACTCATTAATGTTAATGTTAAGCAATGGAAAAAATCAGTTCCAAATAAATCGAAA AAACAAAGATTNNAATAAATAATNAATAATA
Length of 3' end seq.	741
Connected seq. ID	AFO507P
Connected seq.	>AFO507P.Seq ATAGCAACAACACTAATAATAATAATAATAATAATAATAATAATAATAATAATCAACAAC AACAATTATCATCGAACCAAAACTCATCACCATTGATTTACTCTGTTCCATCCTACTATG TTCCAAATTATGGTGTTGTTCTCTCTGCTCCAATGAAAGGTAATTCAAGTTCTTCTATTT TACCACCACAAGCTTGGCCACAAAATAATAATAACAACAATGGTAATAGCAATAGCAACA ATGGAAACAATAATGCCAGTGGTTTCTCTGATTTCATGTTCAATGGCTCTAACATTGACT ACAACTCAATCATGAACAATAATAATAATAATAATAATAATAATAACAACAACAACAACA ACAACAACAACAACAACAACAATAGTAATAATAACAACAACAACAGCAACAACAACAACG GCAACAATGGTGGTATGNTTAATGGAGGATTTGTTAACAATAACAACCATAATAATAATA ACAACAACAATAATAACAATGGTAACTTAAACTTCCACAACTTTTTACAA---------- GTTTAGATCCATCAAGTTTACAAAAACAAAATGAAATTAATCCACCAATTTCCGTTCGTT CCAATGTCGTTTTCTTTGAACCATACTTGGCCGGTGAACCAGGCAGACACAAGGCATGTT GGAATCTCCTCGAACCAATGCATAGAAACTACTACCAACCAATCCAATTCAAATTACCAT CATTCCCAGACACTTCATTACCAATCACACAAATCGATGATAAAACCGGTATCTTTGATT CTCAACGTTTCCTCGCATTCAATAATCCACAAGCCATGAGTAAATATGAATCCTATCGTA TCTACATTCATCCTTCACTCGGTTACAGTGGTAATGCAAAGAGATTCAAACAACAACCAG ATGTCAATGAGAAAGCTTTGATTTTGGATGGCAATGTCTACGATGGACATTTAAATCCAA TTTACAACTGTAAAATCTGTACCGAATATTATCAAACCAAATCTTACTTTTCCGCTAATC CACATGCAAAAGGTAAAGTTCTTTTGGTCAAAAATAACATATTAACTCGTGTCAAAGATG GTGGTTTCACTCTCTCCTTAAAGCCAATGTGTTGCAGTGGTCATAACTCTCATATCCCAC TCTACTTTCACTTTACCCTTACAAATCCACTCACAAATGAAGTTGTACTCCAATCACTCA TTAATGTTAATGTTAAGCAATGGAAAAAATCAGTTCCAAATAAATCGAAAAAACAAAGAT TNNAATAAATAATNAATAATA
Length of connected seq.	1271
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas