VHL471
Library VH
(Link to library)
Clone ID VHL471
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15912-1
Original site URL
Representative seq. ID VHL471P
(Link to Original site)
Representative DNA sequence
>VHL471 (VHL471Q) /CSM/VH/VHL4-C/VHL471Q.Seq.d/
AATTTAAATTATTTTCTCCAAATTTATTTTTAATATACAAATAATATATATATAAAATGG
CTACACCAGTCCAAGCTTCTACTGTAATTCGTGTTAAACCACATCATTATATTCATGTAT
TAGATAATAATACAAATGTTACAAGAGTTGAAGTTGGACCACAAACATTTACTAGACAAG
ATCATGAACGTGTATTAAATCCAACTCCATTACCAATGATTTTGATCCCACCAAGACAAT
ATTGTATTATTGAAAACCCAATTATTAGAGATAAAGAAGGTAAATTAGTTGTTGATAAAT
TCAATCAACCAAAACTCCGTCATGGTGATCAAGAAATTCGTTTCTCTCAAGATCCATTCC
CATTATATCCAGGTGAAGTTGTCATTGCTCAACCAGTTCCATTACAAGTCATCCAAACCA
ATAGTGCACTTCGTTTGAAATGTCTTCGTGATTTCGTTGAAGTCAAAGCTGACAAAACCA
CAGTCAGTCACATTGCTGGTGATGAATGGTTATTCGXXXXXXXXXXTGAAGCCAAGAACG
AAGAATCTCGTTCCAAATTGGTCCAATTACAAGCTCAATCAGCTGCTGTCGAATCAACTG
GTCAAGCTGTTGCTGAAGCTCGTGCTCGTGCTGAAGCCGCCATCATTGAAGCTGAAAGTG
AAATCAAACAAGCTCGTCTCTCAACCAGAGCCATTGAAATTGAAGCTCTCTCNAAATTAA
AATCTTAAAGCCAAACATATTGTNAAATCCAACACATCAAATCACTCAACANNC
sequence update 2002.10.25
Translated Amino Acid sequence
fklfspnlfliyk*YIYKMATPVQASTVIRVKPHHYIHVLDNNTNVTRVEVGPQTFTRQD
HERVLNPTPLPMILIPPRQYCIIENPIIRDKEGKLVVDKFNQPKLRHGDQEIRFSQDPFP
LYPGEVVIAQPVPLQVIQTNSALRLKCLRDFVEVKADKTTVSHIAGDEWLF---

---EAKNEESRSKLVQLQAQSAAVESTGQAVAEARARAEAAIIEAESEIKQARLSTRAIE
IEALSKLKS*sqtycxiqhikslnx


Translated Amino Acid sequence (All Frames)
Frame A:
nlnyflqiyf*ytnniyikwlhqsklll*fvlnhiiifmy*iiiqmlqelkldhkhlldk
imnvy*iqlhyq*f*shqdnivllktqlleikkvn*llinsinqnsvmvikkfvslkihs
hyiqvklsllnqfhyksskpivhfv*nvfvislkskltkpqsvtllvmngys---

---*sqerrisfqigpitssisccrinwsscc*sscsc*srhh*s*k*nqtssslnqsh*
n*sslxikilkpnilxnpthqitqx

Frame B:
i*iifskfifniqiiyi*ngytspsfycnsc*ttslyscir**ykcyks*swttniy*tr
s*tciksnsitndfdptktilyy*kpny*r*rr*isc**iqstktpsw*srnsflsrsip
iisr*schcstssitshpnq*ctsfemss*fr*sqs*qnhsqshcw**mvi---

---EAKNEESRSKLVQLQAQSAAVESTGQAVAEARARAEAAIIEAESEIKQARLSTRAIE
IEALSKLKS*sqtycxiqhikslnx

Frame C:
fklfspnlfliyk*YIYKMATPVQASTVIRVKPHHYIHVLDNNTNVTRVEVGPQTFTRQD
HERVLNPTPLPMILIPPRQYCIIENPIIRDKEGKLVVDKFNQPKLRHGDQEIRFSQDPFP
LYPGEVVIAQPVPLQVIQTNSALRLKCLRDFVEVKADKTTVSHIAGDEWLF---

---kprtknlvpnwsnyklnqllsnqlvklllklvlvlkppslklkvksnklvsqpeplk
lklsxn*nlkakhivksntsnhstx

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHL471 (VHL471Q) /CSM/VH/VHL4-C/VHL471Q.Seq.d/ 1342 0.0
VHM426 (VHM426Q) /CSM/VH/VHM4-B/VHM426Q.Seq.d/ 908 0.0
VHJ558 (VHJ558Q) /CSM/VH/VHJ5-C/VHJ558Q.Seq.d/ 908 0.0
VHI718 (VHI718Q) /CSM/VH/VHI7-A/VHI718Q.Seq.d/ 908 0.0
VHG741 (VHG741Q) /CSM/VH/VHG7-B/VHG741Q.Seq.d/ 908 0.0
VHG660 (VHG660Q) /CSM/VH/VHG6-C/VHG660Q.Seq.d/ 908 0.0
VHC370 (VHC370Q) /CSM/VH/VHC3-C/VHC370Q.Seq.d/ 908 0.0
VHA647 (VHA647Q) /CSM/VH/VHA6-B/VHA647Q.Seq.d/ 908 0.0
SHL153 (SHL153Q) /CSM/SH/SHL1-C/SHL153Q.Seq.d/ 908 0.0
CHS384 (CHS384Q) /CSM/CH/CHS3-D/CHS384Q.Seq.d/ 908 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(Z37109) D.discoideum mRNA for major vault protein B. 898 0.0 4
(BJ425293) Dictyostelium discoideum cDNA clone:ddv55d08, 5' ... 906 0.0 1
(BJ424820) Dictyostelium discoideum cDNA clone:ddv53n18, 5' ... 906 0.0 1
(BJ423817) Dictyostelium discoideum cDNA clone:ddv50c15, 5' ... 906 0.0 1
(BJ423090) Dictyostelium discoideum cDNA clone:ddv48d05, 5' ... 906 0.0 1
(BJ422022) Dictyostelium discoideum cDNA clone:ddv44g16, 5' ... 906 0.0 1
(BJ421916) Dictyostelium discoideum cDNA clone:ddv44b11, 5' ... 906 0.0 1
(BJ419298) Dictyostelium discoideum cDNA clone:ddv35l17, 5' ... 906 0.0 1
(BJ418342) Dictyostelium discoideum cDNA clone:ddv32m12, 5' ... 906 0.0 1
(BJ397516) Dictyostelium discoideum cDNA clone:dds46i13, 5' ... 906 0.0 1
dna update 2008.11.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54659) RecName: Full=Major vault protein beta; Short=... 316 6e-85
(Q90405) RecName: Full=Major vault protein; AltName: Full=MVP100... 170 4e-41
BC049344_1(BC049344|pid:none) Danio rerio major vault protein, m... 169 9e-41
(Q62667) RecName: Full=Major vault protein; Short=MVP; ... 169 1e-40
AK167899_1(AK167899|pid:none) Mus musculus TIB-55 BB88 cDNA, RIK... 168 2e-40
AK152534_1(AK152534|pid:none) Mus musculus bone marrow macrophag... 168 2e-40
AK088046_1(AK088046|pid:none) Mus musculus 2 days neonate thymus... 168 2e-40
(Q9EQK5) RecName: Full=Major vault protein; Short=MVP; ... 168 2e-40
S57723(S57723)lrp protein - human 167 4e-40
(Q14764) RecName: Full=Major vault protein; Short=MVP; ... 167 4e-40
protein update 2009. 7.16
PSORT

psg: 0.83 gvh: 0.28 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.37 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
40.0 %: cytoplasmic
12.0 %: mitochondrial
4.0 %: vacuolar

>> prediction for VHL471 is nuc

5' end seq. ID VHL471F
5' end seq.
>VHL471F.Seq
AATTTAAATTATTTTCTCCAAATTTATTTTTAATATACAAATAATATATATATAAAATGG
CTACACCAGTCCAAGCTTCTACTGTAATTCGTGTTAAACCACATCATTATATTCATGTAT
TAGATAATAATACAAATGTTACAAGAGTTGAAGTTGGACCACAAACATTTACTAGACAAG
ATCATGAACGTGTATTAAATCCAACTCCATTACCAATGATTTTGATCCCACCAAGACAAT
ATTGTATTATTGAAAACCCAATTATTAGAGATAAAGAAGGTAAATTAGTTGTTGATAAAT
TCAATCAACCAAAACTCCGTCATGGTGATCAAGAAATTCGTTTCTCTCAAGATCCATTCC
CATTATATCCAGGTGAAGTTGTCATTGCTCAACCAGTTCCATTACAAGTCATCCAAACCA
ATAGTGCACTTCGTTTGAAATGTCTTCGTGATTTCGTTGAAGTCAAAGCTGACAAAACCA
CAGTCAGTCACATTGCTGGTGATGAATGGTTATTCGNNNNNNNNNN
Length of 5' end seq. 526
3' end seq. ID VHL471Z
3' end seq.
>VHL471Z.Seq
NNNNNNNNNNTGAAGCCAAGAACGAAGAATCTCGTTCCAAATTGGTCCAATTACAAGCTC
AATCAGCTGCTGTCGAATCAACTGGTCAAGCTGTTGCTGAAGCTCGTGCTCGTGCTGAAG
CCGCCATCATTGAAGCTGAAAGTGAAATCAAACAAGCTCGTCTCTCAACCAGAGCCATTG
AAATTGAAGCTCTCTCNAAATTAAAATCTTAAAGCCAAACATATTGTNAAATCCAACACA
TCAAATCACTCAACANNC
Length of 3' end seq. 258
Connected seq. ID VHL471P
Connected seq.
>VHL471P.Seq
AATTTAAATTATTTTCTCCAAATTTATTTTTAATATACAAATAATATATATATAAAATGG
CTACACCAGTCCAAGCTTCTACTGTAATTCGTGTTAAACCACATCATTATATTCATGTAT
TAGATAATAATACAAATGTTACAAGAGTTGAAGTTGGACCACAAACATTTACTAGACAAG
ATCATGAACGTGTATTAAATCCAACTCCATTACCAATGATTTTGATCCCACCAAGACAAT
ATTGTATTATTGAAAACCCAATTATTAGAGATAAAGAAGGTAAATTAGTTGTTGATAAAT
TCAATCAACCAAAACTCCGTCATGGTGATCAAGAAATTCGTTTCTCTCAAGATCCATTCC
CATTATATCCAGGTGAAGTTGTCATTGCTCAACCAGTTCCATTACAAGTCATCCAAACCA
ATAGTGCACTTCGTTTGAAATGTCTTCGTGATTTCGTTGAAGTCAAAGCTGACAAAACCA
CAGTCAGTCACATTGCTGGTGATGAATGGTTATTCG----------TGAAGCCAAGAACG
AAGAATCTCGTTCCAAATTGGTCCAATTACAAGCTCAATCAGCTGCTGTCGAATCAACTG
GTCAAGCTGTTGCTGAAGCTCGTGCTCGTGCTGAAGCCGCCATCATTGAAGCTGAAAGTG
AAATCAAACAAGCTCGTCTCTCAACCAGAGCCATTGAAATTGAAGCTCTCTCNAAATTAA
AATCTTAAAGCCAAACATATTGTNAAATCCAACACATCAAATCACTCAACANNC
Length of connected seq. 764
Full length Seq ID -
Full length Seq. -
Length of full length seq. -