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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHL444
Library VH
(Link to library)
Clone ID VHL444
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15033-1
Original site URL
Representative seq. ID VHL444P
(Link to Original site)
Representative DNA sequence 
>VHL444 (VHL444Q) /CSM/VH/VHL4-B/VHL444Q.Seq.d/
CACTGTTGGCCTACTGGTATAGTTACAAATAAATAATGAAATTGTTATTATATTTACTTT
CATTATTTATTATTTTAATATCCCAAAACCTAGTTAATTGTGAAAATTATTATTTAACAG
AATGGGATATATTAGCACCATTTCCAAGTGCACCAAGAGAAGATGTTGATGTATTAAATT
GTTATGGTGGAATTGATAATATACCAATAGGTGATAATTCAACATATATTAGTGAATTAG
TTAATGGAGCAAGAGTTGGATGGAATCATTATACAACAAATGTTGATGGTATGGTTAATT
TAAATTTTTCAAATAATGTAAATTGGGATTTAATAAATAATTGGGCAGGATCAAGTGGCA
CATATTTTAGTGGTTGGGGAATTTCAACATTTTCATTGAATACTAGTGAAACCATTTTAG
TTACATGTTCAGGTATTGCAAAGTTTTGGATAGATTCAACAGTGATGCAAGGTGATTCAT
ATGGATTGGGATTACAATTTAATTCAATTCAATTATCAAGTGGTACACATCAATTAAAAG
TTAGAATCATTGGATCANAGGCAGCAAGTTATCAATGTGAAATCAXXXXXXXXXXGAGTG
GTTCAAGTGTAGTTTGGTCAATTTGTAATGATGGTAATGATTGGATGTGGAGTGAAAGAT
TACCATTAAATTCTGGTCCAATGGTACAAATATTAGATTATCCAATTTTAATTGTTTATG
GTACAATTGGAAGTGAACAACAAACCAATCAACGTCAACAATCTGCAGTTTATTTATCAA
ATGTTTTAATGTATCAAATGAGATATTCAATAAATGTTTTAGAGGATACTCAATTCACAA
ATGACTTATTCACAACTTATAATGTAATATTTATGGGAGGCCCACAAACAAATAAAGCAG
TTTACTCAATTCAATCAGTTTTACCATCACCAATTGGTTTCCATGGTTCAAGTGATAATA
TGTCATTCTCTTTAAATGATGATTCAAATATGTTTTCAGGTCCTTCTGTTGGTTTATTGT
TTTTATCATCATGTTATTCACCAGAGGCCATTATGAAAATTACACCAAAAGAACGTTATA
CTCAAGCTAGACAAGGTTGTATGCTTACAGTTATTGAGGGTACTGATACTATTGGTTTCC
AAAATAGTCTTTTCAATTTCCCAACTAAATCATCTTTCCCAATGCCAGATTTCANATATT
AGGTCCAAATTTGGTTATCAAGGTGTATCGGGTGCTAATGCTCTGGATTTGGGATAANA
sequence update 2002.10.25
Translated Amino Acid sequence 
llaywysyk*IMKLLLYLLSLFIILISQNLVNCENYYLTEWDILAPFPSAPREDVDVLNC
YGGIDNIPIGDNSTYISELVNGARVGWNHYTTNVDGMVNLNFSNNVNWDLINNWAGSSGT
YFSGWGISTFSLNTSETILVTCSGIAKFWIDSTVMQGDSYGLGLQFNSIQLSSGTHQLKV
RIIGSXAASYQCEI---

---SGSSVVWSICNDGNDWMWSERLPLNSGPMVQILDYPILIVYGTIGSEQQTNQRQQSA
VYLSNVLMYQMRYSINVLEDTQFTNDLFTTYNVIFMGGPQTNKAVYSIQSVLPSPIGFHG
SSDNMSFSLNDDSNMFSGPSVGLLFLSSCYSPEAIMKITPKERYTQARQGCMLTVIEGTD
TIGFQNSLFNFPTKSSFPMPDFXY*vqiwlsrcigc*csgfgix
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwptgivtnk**ncyyiyfhyllf*ypkt*livkiii*qngiy*hhfqvhqekmlmy*i
vmveliiyq*viiqhilvn*lmeqeldgiiiqqmlmvwli*ifqim*igi**iigqdqva
hilvvgefqhfh*ilvkpf*lhvqvlqsfg*iqq*ckvihmdwdynliqfnyqvvhin*k
lesldxrqqvinvks---

---ewfkcslvnl**w**ldve*kitikfwsngtnirlsnfnclwynwk*ttnqststic
slfikcfnvsneifnkcfrgysihk*lihnl*cniygrptnk*ssllnsisftitnwfpw
fk**yvilfk**fkyvfrsfcwfivfiimlftrghyenytkrtlyss*trlyaysy*gy*
yywfpk*sfqfpn*iifpnarfxilgpnlvikvyrvlmlwiwdx

Frame B:
tvgllv*lqinneiviiftfiiyyfnipkps*l*kllfnrmgyistiskctkrrc*cikl
lwwn**ytnr**fniy**is*wskswmeslynkc*wyg*fkffk*cklgfnk*lgrikwh
if*wlgnfnifiey**nhfsymfryckvldrfnsdar*fiwigiti*fnsiikwytsiks
*nhwixgsklsm*n---

---SGSSVVWSICNDGNDWMWSERLPLNSGPMVQILDYPILIVYGTIGSEQQTNQRQQSA
VYLSNVLMYQMRYSINVLEDTQFTNDLFTTYNVIFMGGPQTNKAVYSIQSVLPSPIGFHG
SSDNMSFSLNDDSNMFSGPSVGLLFLSSCYSPEAIMKITPKERYTQARQGCMLTVIEGTD
TIGFQNSLFNFPTKSSFPMPDFXY*vqiwlsrcigc*csgfgix

Frame C:
llaywysyk*IMKLLLYLLSLFIILISQNLVNCENYYLTEWDILAPFPSAPREDVDVLNC
YGGIDNIPIGDNSTYISELVNGARVGWNHYTTNVDGMVNLNFSNNVNWDLINNWAGSSGT
YFSGWGISTFSLNTSETILVTCSGIAKFWIDSTVMQGDSYGLGLQFNSIQLSSGTHQLKV
RIIGSXAASYQCEI---

---vvqv*fgqfvmmvmigcgvkdyh*ilvqwyky*iiqf*lfmvqlevnnkpinvnnlq
fiyqmf*cik*diq*mf*rilnsqmtysqlim*ylweahkqikqftqfnqfyhhqlvsmv
qviichsl*mmiqicfqvlllvycfyhhvihqrpl*klhqknvilkldkvvclqllrvli
llvskivfsisqlnhlsqcqisxirskfgyqgvsganaldlg*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL444 (VHL444Q) /CSM/VH/VHL4-B/VHL444Q.Seq.d/                       2420   0.0
VHN389 (VHN389Q) /CSM/VH/VHN3-D/VHN389Q.Seq.d/                       1285   0.0
VHL373 (VHL373Q) /CSM/VH/VHL3-D/VHL373Q.Seq.d/                       1285   0.0
CHO337 (CHO337Q) /CSM/CH/CHO3-B/CHO337Q.Seq.d/                       1285   0.0
VHM674 (VHM674Q) /CSM/VH/VHM6-D/VHM674Q.Seq.d/                       1283   0.0
VHN350 (VHN350Q) /CSM/VH/VHN3-C/VHN350Q.Seq.d/                       1279   0.0
VHM309 (VHM309Q) /CSM/VH/VHM3-A/VHM309Q.Seq.d/                       1279   0.0
VHD334 (VHD334Q) /CSM/VH/VHD3-B/VHD334Q.Seq.d/                       1277   0.0
VHM812 (VHM812Q) /CSM/VH/VHM8-A/VHM812Q.Seq.d/                       1271   0.0
VHK792 (VHK792Q) /CSM/VH/VHK7-D/VHK792Q.Seq.d/                       1271   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ443566) Dictyostelium discoideum cDNA clone:ddv53h12, 3' ...  1304   0.0    1
(BJ444559) Dictyostelium discoideum cDNA clone:ddv56c20, 3' ...  1283   0.0    1
(BJ444349) Dictyostelium discoideum cDNA clone:ddv56h04, 3' ...  1269   0.0    1
(BJ428961) Dictyostelium discoideum cDNA clone:ddv1i24, 3' e...  1245   0.0    1
(BJ443891) Dictyostelium discoideum cDNA clone:ddv54a18, 3' ...  1221   0.0    1
(BJ444889) Dictyostelium discoideum cDNA clone:ddv57b23, 3' ...  1207   0.0    2
(BJ444812) Dictyostelium discoideum cDNA clone:ddv57d13, 3' ...  1207   0.0    2
(BJ443678) Dictyostelium discoideum cDNA clone:ddv53b19, 3' ...  1207   0.0    2
(BJ384992) Dictyostelium discoideum cDNA clone:ddc51o07, 3' ...  1193   0.0    2
(BJ446242) Dictyostelium discoideum cDNA clone:ddv62i03, 3' ...  1178   0.0    3
dna update 2008.11.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE008691_1920(AE008691|pid:none) Thermoanaerobacter tengcongensi...    43   0.021
CP000267_695(CP000267|pid:none) Rhodoferax ferrireducens T118, c...    39   0.39
AC116957_137(AC116957|pid:none) Dictyostelium discoideum chromos...    39   0.51
AE017341_213(AE017341|pid:none) Cryptococcus neoformans var. neo...    37   1.1
CP000394_1465(CP000394|pid:none) Granulibacter bethesdensis CGDN...    37   1.1
CP001025_1096(CP001025|pid:none) Burkholderia ambifaria MC40-6 c...    35   4.4
CP000151_1147(CP000151|pid:none) Burkholderia sp. 383 chromosome...    35   4.4
CP000269_2198(CP000269|pid:none) Janthinobacterium sp. Marseille...    35   5.7
AL844509_38(AL844509|pid:none) Plasmodium falciparum 3D7 chromos...    34   9.7
CP000614_1118(CP000614|pid:none) Burkholderia vietnamiensis G4 c...    34   9.7
protein update 2009. 7.16
PSORT 

 psg: 0.98  gvh: 0.73  alm: 0.39  top: 0.20  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: extracellular, including cell wall
	 12.0 %: cytoplasmic
	 12.0 %: endoplasmic reticulum
	  8.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for VHL444 is exc
5' end seq. ID VHL444F
5' end seq. 
>VHL444F.Seq
CACTGTTGGCCTACTGGTATAGTTACAAATAAATAATGAAATTGTTATTATATTTACTTT
CATTATTTATTATTTTAATATCCCAAAACCTAGTTAATTGTGAAAATTATTATTTAACAG
AATGGGATATATTAGCACCATTTCCAAGTGCACCAAGAGAAGATGTTGATGTATTAAATT
GTTATGGTGGAATTGATAATATACCAATAGGTGATAATTCAACATATATTAGTGAATTAG
TTAATGGAGCAAGAGTTGGATGGAATCATTATACAACAAATGTTGATGGTATGGTTAATT
TAAATTTTTCAAATAATGTAAATTGGGATTTAATAAATAATTGGGCAGGATCAAGTGGCA
CATATTTTAGTGGTTGGGGAATTTCAACATTTTCATTGAATACTAGTGAAACCATTTTAG
TTACATGTTCAGGTATTGCAAAGTTTTGGATAGATTCAACAGTGATGCAAGGTGATTCAT
ATGGATTGGGATTACAATTTAATTCAATTCAATTATCAAGTGGTACACATCAATTAAAAG
TTAGAATCATTGGATCANAGGCAGCAAGTTATCAATGTGAAATCANNNNNNNNNN
Length of 5' end seq. 595
3' end seq. ID VHL444Z
3' end seq. 
>VHL444Z.Seq
NNNNNNNNNNGAGTGGTTCAAGTGTAGTTTGGTCAATTTGTAATGATGGTAATGATTGGA
TGTGGAGTGAAAGATTACCATTAAATTCTGGTCCAATGGTACAAATATTAGATTATCCAA
TTTTAATTGTTTATGGTACAATTGGAAGTGAACAACAAACCAATCAACGTCAACAATCTG
CAGTTTATTTATCAAATGTTTTAATGTATCAAATGAGATATTCAATAAATGTTTTAGAGG
ATACTCAATTCACAAATGACTTATTCACAACTTATAATGTAATATTTATGGGAGGCCCAC
AAACAAATAAAGCAGTTTACTCAATTCAATCAGTTTTACCATCACCAATTGGTTTCCATG
GTTCAAGTGATAATATGTCATTCTCTTTAAATGATGATTCAAATATGTTTTCAGGTCCTT
CTGTTGGTTTATTGTTTTTATCATCATGTTATTCACCAGAGGCCATTATGAAAATTACAC
CAAAAGAACGTTATACTCAAGCTAGACAAGGTTGTATGCTTACAGTTATTGAGGGTACTG
ATACTATTGGTTTCCAAAATAGTCTTTTCAATTTCCCAACTAAATCATCTTTCCCAATGC
CAGATTTCANATATTAGGTCCAAATTTGGTTATCAAGGTGTATCGGGTGCTAATGCTCTG
GATTTGGGATAANA
Length of 3' end seq. 674
Connected seq. ID VHL444P
Connected seq. 
>VHL444P.Seq
CACTGTTGGCCTACTGGTATAGTTACAAATAAATAATGAAATTGTTATTATATTTACTTT
CATTATTTATTATTTTAATATCCCAAAACCTAGTTAATTGTGAAAATTATTATTTAACAG
AATGGGATATATTAGCACCATTTCCAAGTGCACCAAGAGAAGATGTTGATGTATTAAATT
GTTATGGTGGAATTGATAATATACCAATAGGTGATAATTCAACATATATTAGTGAATTAG
TTAATGGAGCAAGAGTTGGATGGAATCATTATACAACAAATGTTGATGGTATGGTTAATT
TAAATTTTTCAAATAATGTAAATTGGGATTTAATAAATAATTGGGCAGGATCAAGTGGCA
CATATTTTAGTGGTTGGGGAATTTCAACATTTTCATTGAATACTAGTGAAACCATTTTAG
TTACATGTTCAGGTATTGCAAAGTTTTGGATAGATTCAACAGTGATGCAAGGTGATTCAT
ATGGATTGGGATTACAATTTAATTCAATTCAATTATCAAGTGGTACACATCAATTAAAAG
TTAGAATCATTGGATCANAGGCAGCAAGTTATCAATGTGAAATCA----------GAGTG
GTTCAAGTGTAGTTTGGTCAATTTGTAATGATGGTAATGATTGGATGTGGAGTGAAAGAT
TACCATTAAATTCTGGTCCAATGGTACAAATATTAGATTATCCAATTTTAATTGTTTATG
GTACAATTGGAAGTGAACAACAAACCAATCAACGTCAACAATCTGCAGTTTATTTATCAA
ATGTTTTAATGTATCAAATGAGATATTCAATAAATGTTTTAGAGGATACTCAATTCACAA
ATGACTTATTCACAACTTATAATGTAATATTTATGGGAGGCCCACAAACAAATAAAGCAG
TTTACTCAATTCAATCAGTTTTACCATCACCAATTGGTTTCCATGGTTCAAGTGATAATA
TGTCATTCTCTTTAAATGATGATTCAAATATGTTTTCAGGTCCTTCTGTTGGTTTATTGT
TTTTATCATCATGTTATTCACCAGAGGCCATTATGAAAATTACACCAAAAGAACGTTATA
CTCAAGCTAGACAAGGTTGTATGCTTACAGTTATTGAGGGTACTGATACTATTGGTTTCC
AAAATAGTCTTTTCAATTTCCCAACTAAATCATCTTTCCCAATGCCAGATTTCANATATT
AGGTCCAAATTTGGTTATCAAGGTGTATCGGGTGCTAATGCTCTGGATTTGGGATAANA
Length of connected seq. 1249
Full length Seq ID -
Full length Seq. -
Length of full length seq. -