NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHL434
Library VH
(Link to library)
Clone ID VHL434
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16336-1
Original site URL
Representative seq. ID VHL434P
(Link to Original site)
Representative DNA sequence 
>VHL434 (VHL434Q) /CSM/VH/VHL4-B/VHL434Q.Seq.d/
ATTTTTATATTTTCATTCACCAAAAACTATTGAAAATGTTTGAAAGAACATTGGTTGACC
TCATCAGAGGTATTAGAAACCATAAAAAGAATGAAACTAAATTTATAAATCAATGTATAA
ATGAAATTAAAGAAGAATTAAAAGGTGATATGCAAAAAAAGACAGTTGCCGTCCAAAAAT
TAACATATATTCAAATGTTAGGATTTGATATTAGTTGGGCATCATTTAAAATTGTTGAAG
TTATGAGTTGTAATAAATTTTCATCAAAAAGAATTGGATATTTAGCAGCATCACAAAGTT
TTAATGAAGGAACAGATGTTATTGTATTGGCAACTCATCAAATTAGAAAGGATTTCTTAT
CATCGAATCAAAGTGAAGCCTATTTAGCATTGAATTGTCTTTCAAATATTTGTACAACCG
ATTTAGCAAGAGAGTTGGCAAATGATATCCTAACATTATTGAGTACACAAAAAACACATA
TTTTAAAGAGAGCCATCACGGTGTTATATAAGATATTCTTGAGATATCCAGAATCGXXXX
XXXXXXTTCAATCAGTTTACATGTTAAATTCATTAAAAGTTTTCTCTCATGCTTGTGCAA
AAGCAAACGGTGACAAAATCCCATCATTAGACGATGATGATGAGGAAGAGGAAGCACAAG
AAGAAGAGGACCAAAAATGAAATCACTCATGAAATCGTTCAAGAATGTCTTGAAATTATT
AAATCACGTTTAACAATTTTCACTCATAGTATTTACCTAAATGTACAAGAACGTGCTTGT
CTTATTAATGAATTATTATCATTCTACACAGTCACTAAAGAACAAGGTAATAATATTTCA
AAGGAGTTAATTTCATTGTTCACAGAACAATTAAATCCAGTTGGTCCAAAAGCTCAAAAG
AAAGTACCAATTCCAGAAGGTTTAGATTTAGATGAATGGATTAATGATCCAAAACATCAA
GAACCAATTGAAGAGGATGAAGATGATGATATTTTCAATACAAGTACATCNTAGTCATCA
AAAGAAACATCACAAACATCACCGTGGAGGATATGATGGTGATGATGATGAAGATGATGA
AACCAATAGTTCTCATTCAGGTCATTCAAGTAGTAATTTCAAGTCGTCATCCAATTGATA
TTCAAAGACAAAAGGAAGAAAGATTAAGAAAACAAGCTAATAATCCATATATGTTGGGTG
GTAAAGTATCAAAGAAATTATCAACCAAGATCCTGAAAANATTCCAGGGTTCAACTAACT
GGGATTTAGGTCATCTTCATGTGGGCATCATCAAATGACCAAGCCATCAAAAGG
sequence update 2002.10.25
Translated Amino Acid sequence 
FYIFIHQKLLKMFERTLVDLIRGIRNHKKNETKFINQCINEIKEELKGDMQKKTVAVQKL
TYIQMLGFDISWASFKIVEVMSCNKFSSKRIGYLAASQSFNEGTDVIVLATHQIRKDFLS
SNQSEAYLALNCLSNICTTDLARELANDILTLLSTQKTHILKRAITVLYKIFLRYPES--
-

---QSVYMLNSLKVFSHACAKANGDKIPSLDDDDEEEEAQEEEDQK*nhs*nrsrms*ny
*itfnnfhs*ylpkctrtclsy**iiiilhsh*rtr**yfkgvnfivhrtiksswskssk
estnsrrfrfr*md**sktsrtn*rg*r**yfqykyixvikrnitnitvedmmvmmmkmm
kpivliqviqvvissrhpidiqrqkeerlrkqannpymlggkvskklstkilkxfqgstn
wdlghlhvgiik*pshqk
Translated Amino Acid sequence (All Frames) 
Frame A:
ififsftkny*kclkehwltssevletikrmklnl*inv*mklkkn*kvickkrqlpskn
*hifkc*dlilvghhlkllkl*vvinfhqkeldi*qhhkvlmkeqmllywqliklerisy
hrikvkpi*h*ivfqifvqpi*qeswqmis*hy*vhkkhif*repsrcyirys*diqn--
-

---fnqftc*ih*kfslmlvqkqtvtkshh*tmmmrkrkhkkkrtkneitheivqeclei
iksrltifthsiylnvqeraclinellsfytvtkeqgnniskelislfteqlnpvgpkaq
kkvpipegldldewindpkhqepieededddifntsts*ssketsqtspwri*w****r*
*nq*fsfrsfk**fqvviqlifkdkrkkd*enkliihicwvvkyqrnyqprs*kxsrvql
tgi*vifmwassndqaikr

Frame B:
flyfhspktienv*knig*phqry*kp*ke*n*iyksmyk*n*rrikr*yakkdscrpki
niysnvri*y*lgii*nc*syel**ifikknwifssitkf**rnrcycignssn*kgfli
iesk*slfsielsfkylynrfskrvgk*ypniieytkntyfkeshhgvi*dileisri--
-

---sislhvkfiksflsclckskr*qnpiirr***grgstrrrgpkmkslmksfknvlkl
lnhv*qfslivft*myknvlvllmnyyhstqslknkviifqrs*fhcsqnn*iqlvqklk
rkyqfqkv*i*mnglmiqniknqlkrmkmmifsiqvhxshqkkhhkhhrggydgdddedd
etnsshsghsssnfksssn*ysktkgrkikkts**siyvgw*sikeiinqdpexipgfn*
lgfrssscghhqmtkpsk

Frame C:
FYIFIHQKLLKMFERTLVDLIRGIRNHKKNETKFINQCINEIKEELKGDMQKKTVAVQKL
TYIQMLGFDISWASFKIVEVMSCNKFSSKRIGYLAASQSFNEGTDVIVLATHQIRKDFLS
SNQSEAYLALNCLSNICTTDLARELANDILTLLSTQKTHILKRAITVLYKIFLRYPES--
-

---QSVYMLNSLKVFSHACAKANGDKIPSLDDDDEEEEAQEEEDQK*nhs*nrsrms*ny
*itfnnfhs*ylpkctrtclsy**iiiilhsh*rtr**yfkgvnfivhrtiksswskssk
estnsrrfrfr*md**sktsrtn*rg*r**yfqykyixvikrnitnitvedmmvmmmkmm
kpivliqviqvvissrhpidiqrqkeerlrkqannpymlggkvskklstkilkxfqgstn
wdlghlhvgiik*pshqk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL434 (VHL434Q) /CSM/VH/VHL4-B/VHL434Q.Seq.d/                       1972   0.0
VHJ112 (VHJ112Q) /CSM/VH/VHJ1-A/VHJ112Q.Seq.d/                       1021   0.0
SHL605 (SHL605Q) /CSM/SH/SHL6-A/SHL605Q.Seq.d/                       1021   0.0
SHI615 (SHI615Q) /CSM/SH/SHI6-A/SHI615Q.Seq.d/                       1021   0.0
SHB371 (SHB371Q) /CSM/SH/SHB3-C/SHB371Q.Seq.d/                       1021   0.0
CHR478 (CHR478Q) /CSM/CH/CHR4-D/CHR478Q.Seq.d/                       1021   0.0
AHI847 (AHI847Q) /CSM/AH/AHI8-B/AHI847Q.Seq.d/                       1021   0.0
AHI342 (AHI342Q) /CSM/AH/AHI3-B/AHI342Q.Seq.d/                       1021   0.0
SHF187 (SHF187Q) /CSM/SH/SHF1-D/SHF187Q.Seq.d/                       1019   0.0
AHQ883 (AHQ883Q) /CSM/AH/AHQ8-D/AHQ883Q.Seq.d/                       1019   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ443546) Dictyostelium discoideum cDNA clone:ddv53d10, 3' ...   997   0.0    2
(BJ444015) Dictyostelium discoideum cDNA clone:ddv54n20, 3' ...   852   0.0    5
(BJ445109) Dictyostelium discoideum cDNA clone:ddv58p11, 3' ...   668   0.0    7
(BJ436862) Dictyostelium discoideum cDNA clone:ddv32p09, 3' ...   668   0.0    8
(BJ384317) Dictyostelium discoideum cDNA clone:ddc49d02, 3' ...   668   0.0    6
(BJ382646) Dictyostelium discoideum cDNA clone:ddc45n11, 3' ...   668   0.0    7
(BJ356421) Dictyostelium discoideum cDNA clone:dda60c07, 3' ...   668   0.0    7
(BJ355620) Dictyostelium discoideum cDNA clone:dda57n18, 3' ...   668   0.0    6
(BJ354421) Dictyostelium discoideum cDNA clone:dda53f17, 3' ...   668   0.0    8
(BJ342309) Dictyostelium discoideum cDNA clone:dda13l11, 3' ...   668   0.0    6
dna update 2008.11.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC005142_1(BC005142|pid:none) Homo sapiens adaptor-related prote...   209   1e-52
BC010065_1(BC010065|pid:none) Homo sapiens adaptor-related prote...   209   1e-52
AB384738_1(AB384738|pid:none) Synthetic construct DNA, clone: pF...   209   1e-52
(O14617) RecName: Full=AP-3 complex subunit delta-1; AltName: Fu...   209   1e-52
AB015979_1(AB015979|pid:none) Bos taurus mRNA for adaptor relate...   207   5e-52
AK141789_1(AK141789|pid:none) Mus musculus 9 days embryo whole b...   207   7e-52
AK155518_1(AK155518|pid:none) Mus musculus NOD-derived CD11c +ve...   207   7e-52
(O54774) RecName: Full=AP-3 complex subunit delta-1; AltName: Fu...   207   7e-52
BC037477_1(BC037477|pid:none) Mus musculus adaptor-related prote...   207   7e-52
BC154680_1(BC154680|pid:none) Xenopus tropicalis adaptor-related...   205   3e-51
protein update 2009. 7.16
PSORT 

 psg: 0.59  gvh: 0.42  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VHL434 is cyt
5' end seq. ID VHL434F
5' end seq. 
>VHL434F.Seq
ATTTTTATATTTTCATTCACCAAAAACTATTGAAAATGTTTGAAAGAACATTGGTTGACC
TCATCAGAGGTATTAGAAACCATAAAAAGAATGAAACTAAATTTATAAATCAATGTATAA
ATGAAATTAAAGAAGAATTAAAAGGTGATATGCAAAAAAAGACAGTTGCCGTCCAAAAAT
TAACATATATTCAAATGTTAGGATTTGATATTAGTTGGGCATCATTTAAAATTGTTGAAG
TTATGAGTTGTAATAAATTTTCATCAAAAAGAATTGGATATTTAGCAGCATCACAAAGTT
TTAATGAAGGAACAGATGTTATTGTATTGGCAACTCATCAAATTAGAAAGGATTTCTTAT
CATCGAATCAAAGTGAAGCCTATTTAGCATTGAATTGTCTTTCAAATATTTGTACAACCG
ATTTAGCAAGAGAGTTGGCAAATGATATCCTAACATTATTGAGTACACAAAAAACACATA
TTTTAAAGAGAGCCATCACGGTGTTATATAAGATATTCTTGAGATATCCAGAATCGNNNN
NNNNNN
Length of 5' end seq. 546
3' end seq. ID VHL434Z
3' end seq. 
>VHL434Z.Seq
NNNNNNNNNNTTCAATCAGTTTACATGTTAAATTCATTAAAAGTTTTCTCTCATGCTTGT
GCAAAAGCAAACGGTGACAAAATCCCATCATTAGACGATGATGATGAGGAAGAGGAAGCA
CAAGAAGAAGAGGACCAAAAATGAAATCACTCATGAAATCGTTCAAGAATGTCTTGAAAT
TATTAAATCACGTTTAACAATTTTCACTCATAGTATTTACCTAAATGTACAAGAACGTGC
TTGTCTTATTAATGAATTATTATCATTCTACACAGTCACTAAAGAACAAGGTAATAATAT
TTCAAAGGAGTTAATTTCATTGTTCACAGAACAATTAAATCCAGTTGGTCCAAAAGCTCA
AAAGAAAGTACCAATTCCAGAAGGTTTAGATTTAGATGAATGGATTAATGATCCAAAACA
TCAAGAACCAATTGAAGAGGATGAAGATGATGATATTTTCAATACAAGTACATCNTAGTC
ATCAAAAGAAACATCACAAACATCACCGTGGAGGATATGATGGTGATGATGATGAAGATG
ATGAAACCAATAGTTCTCATTCAGGTCATTCAAGTAGTAATTTCAAGTCGTCATCCAATT
GATATTCAAAGACAAAAGGAAGAAAGATTAAGAAAACAAGCTAATAATCCATATATGTTG
GGTGGTAAAGTATCAAAGAAATTATCAACCAAGATCCTGAAAANATTCCAGGGTTCAACT
AACTGGGATTTAGGTCATCTTCATGTGGGCATCATCAAATGACCAAGCCATCAAAAGG
Length of 3' end seq. 778
Connected seq. ID VHL434P
Connected seq. 
>VHL434P.Seq
ATTTTTATATTTTCATTCACCAAAAACTATTGAAAATGTTTGAAAGAACATTGGTTGACC
TCATCAGAGGTATTAGAAACCATAAAAAGAATGAAACTAAATTTATAAATCAATGTATAA
ATGAAATTAAAGAAGAATTAAAAGGTGATATGCAAAAAAAGACAGTTGCCGTCCAAAAAT
TAACATATATTCAAATGTTAGGATTTGATATTAGTTGGGCATCATTTAAAATTGTTGAAG
TTATGAGTTGTAATAAATTTTCATCAAAAAGAATTGGATATTTAGCAGCATCACAAAGTT
TTAATGAAGGAACAGATGTTATTGTATTGGCAACTCATCAAATTAGAAAGGATTTCTTAT
CATCGAATCAAAGTGAAGCCTATTTAGCATTGAATTGTCTTTCAAATATTTGTACAACCG
ATTTAGCAAGAGAGTTGGCAAATGATATCCTAACATTATTGAGTACACAAAAAACACATA
TTTTAAAGAGAGCCATCACGGTGTTATATAAGATATTCTTGAGATATCCAGAATCG----
------TTCAATCAGTTTACATGTTAAATTCATTAAAAGTTTTCTCTCATGCTTGTGCAA
AAGCAAACGGTGACAAAATCCCATCATTAGACGATGATGATGAGGAAGAGGAAGCACAAG
AAGAAGAGGACCAAAAATGAAATCACTCATGAAATCGTTCAAGAATGTCTTGAAATTATT
AAATCACGTTTAACAATTTTCACTCATAGTATTTACCTAAATGTACAAGAACGTGCTTGT
CTTATTAATGAATTATTATCATTCTACACAGTCACTAAAGAACAAGGTAATAATATTTCA
AAGGAGTTAATTTCATTGTTCACAGAACAATTAAATCCAGTTGGTCCAAAAGCTCAAAAG
AAAGTACCAATTCCAGAAGGTTTAGATTTAGATGAATGGATTAATGATCCAAAACATCAA
GAACCAATTGAAGAGGATGAAGATGATGATATTTTCAATACAAGTACATCNTAGTCATCA
AAAGAAACATCACAAACATCACCGTGGAGGATATGATGGTGATGATGATGAAGATGATGA
AACCAATAGTTCTCATTCAGGTCATTCAAGTAGTAATTTCAAGTCGTCATCCAATTGATA
TTCAAAGACAAAAGGAAGAAAGATTAAGAAAACAAGCTAATAATCCATATATGTTGGGTG
GTAAAGTATCAAAGAAATTATCAACCAAGATCCTGAAAANATTCCAGGGTTCAACTAACT
GGGATTTAGGTCATCTTCATGTGGGCATCATCAAATGACCAAGCCATCAAAAGG
Length of connected seq. 1304
Full length Seq ID -
Full length Seq. -
Length of full length seq. -