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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHL427
Library VH
(Link to library)
Clone ID VHL427
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12390-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHL427 (VHL427Q) /CSM/VH/VHL4-B/VHL427Q.Seq.d/
XXXXXXXXXXACTTTTATAATTTCAAATAGTAGTGTACAAGGTAGTGGTGTAATTAATTC
ATCAATTTCATCAAATGGTGGATCAAGTTATGGTAACGATACAATCACAAACTTGGATAT
TAATGGTAATTTAGAATCAAATGAAGATGAATTTATATTTACATTGGATGGTAAAAACTC
TACAACTATTAATATTGGTAATAATGCAACCATTACAAATGCTACTTTAATCATTAGAGT
TAGTAATGATATTGTAAATTCAACCCAAAATACAACATTGGTAACAAGTTCAAATTTGGA
TGCAACCTTTTCAAAAATTGTTTTTCAATCATATGATCCAGAAACTGGAATTCAAAAACA
ATTGGATGATTGTGCTCATAAAATTAAAAATGATAAAGGTACTCTTGGATTATTATTAAA
TTCAAATGCTAAACAATGTGTAATAGTTTCCACTACAAGTAGTGGTACAGGTGGTGGCAC
AGGTGGTGGTACAGGTGGTAGTACAGGTGGTGGTACAAGTGGTAGTACAGGTGGAGGTAC
AGGTGGTACAGGTGGAGGTACAGGCCAAACTGTTGTGGTTGTTGAAGAAGATCAAAAGAG
CTCATTAAGTGCTGGTGCAATTGCTGGTATTATTGTAGGTATCGTTTGTGTTGCNGGTAT
TGTTG
sequence update 2002. 9.10
Translated Amino Acid sequence 
---FIISNSSVQGSGVINSSISSNGGSSYGNDTITNLDINGNLESNEDEFIFTLDGKNST
TINIGNNATITNATLIIRVSNDIVNSTQNTTLVTSSNLDATFSKIVFQSYDPETGIQKQL
DDCAHKIKNDKGTLGLLLNSNAKQCVIVSTTSSGTGGGTGGGTGGSTGGGTSGSTGGGTG
GTGGGTGQTVVVVEEDQKSSLSAGAIAGIIVGIVCVAGIV
Translated Amino Acid sequence (All Frames) 
Frame A:
---ll*fqivvykvvv*lihqfhqmvdqvmvtiqsqtwilmvi*nqmkmnlylhwmvktl
qllilvimqplqmll*slelvmil*iqpkiqhw*qvqiwmqpfqklffnhmiqklefknn
wmivliklkmikvlldyy*iqmlnnv**fplqvvvqvvaqvvvqvvvqvvvqvvvqvevq
vvqvevqakllwllkkikrah*vlvqllvll*vsfvlxvll


Frame B:
---fynfk**ctr*wcn*finfikwwiklw*rynhklgy*w*frik*r*iyiyigw*kly
ny*yw**cnhykcyfnh*s***yckfnpkynignkfkfgcnlfkncfsii*srnwnskti
g*lcs*n*k**ryswiiikfkc*tmcnsfhyk*wyrwwhrwwyrw*yrwwykw*yrwryr
wyrwryrpnccgc*rrskelikcwcncwyycryrlccxyc


Frame C:
---FIISNSSVQGSGVINSSISSNGGSSYGNDTITNLDINGNLESNEDEFIFTLDGKNST
TINIGNNATITNATLIIRVSNDIVNSTQNTTLVTSSNLDATFSKIVFQSYDPETGIQKQL
DDCAHKIKNDKGTLGLLLNSNAKQCVIVSTTSSGTGGGTGGGTGGSTGGGTSGSTGGGTG
GTGGGTGQTVVVVEEDQKSSLSAGAIAGIIVGIVCVAGIV
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL427 (VHL427Q) /CSM/VH/VHL4-B/VHL427Q.Seq.d/                        894   0.0
VHK596 (VHK596Q) /CSM/VH/VHK5-D/VHK596Q.Seq.d/                        894   0.0
VHH794 (VHH794Q) /CSM/VH/VHH7-D/VHH794Q.Seq.d/                        894   0.0
VHH521 (VHH521Q) /CSM/VH/VHH5-A/VHH521Q.Seq.d/                        894   0.0
VHE339 (VHE339Q) /CSM/VH/VHE3-B/VHE339Q.Seq.d/                        894   0.0
VHD329 (VHD329Q) /CSM/VH/VHD3-B/VHD329Q.Seq.d/                        894   0.0
VHC580 (VHC580Q) /CSM/VH/VHC5-D/VHC580Q.Seq.d/                        894   0.0
VHA340 (VHA340Q) /CSM/VH/VHA3-B/VHA340Q.Seq.d/                        894   0.0
VHJ262 (VHJ262Q) /CSM/VH/VHJ2-C/VHJ262Q.Seq.d/                        886   0.0
VHA227 (VHA227Q) /CSM/VH/VHA2-B/VHA227Q.Seq.d/                        884   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    38   2e-06  17
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    48   3e-06  17
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    34   3e-06  11
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    38   1e-04  14
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           32   2e-04  19
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    30   3e-04  14
AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.    34   6e-04  11
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   0.001  18
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    34   0.002  14
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    32   0.002  11
dna update 2004. 3.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000647_1382(CP000647|pid:none) Klebsiella pneumoniae subsp. pn...    34   3.4
CP000568_3082(CP000568|pid:none) Clostridium thermocellum ATCC 2...    34   4.4
AC116957_68(AC116957|pid:none) Dictyostelium discoideum chromoso...    33   7.5
AY698035_1(AY698035|pid:none) Desmognathus marmoratus isolate 69...    33   7.5
AY612348_1(AY612348|pid:none) Desmognathus quadramaculatus vouch...    33   9.8
AY698038_1(AY698038|pid:none) Desmognathus marmoratus isolate T0...    33   9.8
AY612344_1(AY612344|pid:none) Desmognathus marmoratus voucher KH...    33   9.8
AY698041_1(AY698041|pid:none) Desmognathus marmoratus isolate T0...    33   9.8
DQ018668_1(DQ018668|pid:none) Plethodon hubrichti isolate 75144 ...    33   9.8
protein update 2009. 3.14
PSORT 

 psg: 0.85  gvh: 0.39  alm: 0.18  top: 0.67  tms: 0.07  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for VHL427 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHL427Z
3' end seq. 
>VHL427Z.Seq
NNNNNNNNNNACTTTTATAATTTCAAATAGTAGTGTACAAGGTAGTGGTGTAATTAATTC
ATCAATTTCATCAAATGGTGGATCAAGTTATGGTAACGATACAATCACAAACTTGGATAT
TAATGGTAATTTAGAATCAAATGAAGATGAATTTATATTTACATTGGATGGTAAAAACTC
TACAACTATTAATATTGGTAATAATGCAACCATTACAAATGCTACTTTAATCATTAGAGT
TAGTAATGATATTGTAAATTCAACCCAAAATACAACATTGGTAACAAGTTCAAATTTGGA
TGCAACCTTTTCAAAAATTGTTTTTCAATCATATGATCCAGAAACTGGAATTCAAAAACA
ATTGGATGATTGTGCTCATAAAATTAAAAATGATAAAGGTACTCTTGGATTATTATTAAA
TTCAAATGCTAAACAATGTGTAATAGTTTCCACTACAAGTAGTGGTACAGGTGGTGGCAC
AGGTGGTGGTACAGGTGGTAGTACAGGTGGTGGTACAAGTGGTAGTACAGGTGGAGGTAC
AGGTGGTACAGGTGGAGGTACAGGCCAAACTGTTGTGGTTGTTGAAGAAGATCAAAAGAG
CTCATTAAGTGCTGGTGCAATTGCTGGTATTATTGTAGGTATCGTTTGTGTTGCNGGTAT
TGTTG
Length of 3' end seq. 665
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -