VHL423
Library VH
(Link to library)
Clone ID VHL423
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16306-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHL423 (VHL423Q) /CSM/VH/VHL4-A/VHL423Q.Seq.d/
XXXXXXXXXXTGGATTTTTCATCGCTGGTGTTGCCTCCAAAGTACTCATGATGCAATGTA
CCTTTTGTATCAACTCTTTGGCTCATTATCTTGGTGAAGCAACTTACACCGACCAAAGAT
CTCCACGTGACTCTTTTATCACATCTTTGGTCACTTTTGGTGAAGGTTATCATAACTTTC
ATCATGAATTCCCATATGATTACAGAAATGGTATTCATATGTCTGCTTACGATCCAGGTA
AGTGGTTAATCAATTTCCTTAGTTGGNTTGGTTTCGCCTATGAATTAAAGAGATTCCCAA
GTGAATTATTCGCAAAAGGTAAAATTCAAATGCAAGAGACAAACCATCAAAAAATTACGT
GATCAACTCTATTGGGGTAANCCATTGGATCAATTACCATCATTCACTCGTGCTCNAGTT
AAAGAGAAATGTCAAAAAGAAAAGAAACAACTCTTAATCATTGAAGATGTTATNTATGAT
AT
sequence update 2002. 9.10
Translated Amino Acid sequence
---GFFIAGVASKVLMMQCTFCINSLAHYLGEATYTDQRSPRDSFITSLVTFGEGYHNFH
HEFPYDYRNGIHMSAYDPGKWLINFLSWXGFAYELKRFPSELFAKGKIQMQETNHQKIT*
stllg*xigsitiihscss*remskrkettlnh*rcyx*y


Translated Amino Acid sequence (All Frames)
Frame A:
---GFFIAGVASKVLMMQCTFCINSLAHYLGEATYTDQRSPRDSFITSLVTFGEGYHNFH
HEFPYDYRNGIHMSAYDPGKWLINFLSWXGFAYELKRFPSELFAKGKIQMQETNHQKIT*
stllg*xigsitiihscss*remskrkettlnh*rcyx*y


Frame B:
---dfsslvlppkys*cnvpfvstlwliilvkqltptkdlhvtllshlwsllvkviitfi
mnshmitemvficlltiqvsg*sislvglvspmn*rdsqvnysqkvkfkckrqtikklrd
qlywgxpldqlpsftraxvkekcqkekkqlliiedvxyd


Frame C:
---ifhrwcclqsthdamyllyqlfgslsw*snlhrpkist*lfyhifghfw*rls*lss
*ipi*lqkwysyvclrsr*vvnqfp*lxwfrl*ikeipk*iirkr*nsnardkpsknyvi
nsigvxhwinyhhslvlxlkrnvkkkrnns*slkmlxmi


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHL423 (VHL423Q) /CSM/VH/VHL4-A/VHL423Q.Seq.d/ 912 0.0
VHQ471 (VHQ471Q) /CSM/VH/VHQ4-C/VHQ471Q.Seq.d/ 896 0.0
VHP830 (VHP830Q) /CSM/VH/VHP8-B/VHP830Q.Seq.d/ 896 0.0
VHP116 (VHP116Q) /CSM/VH/VHP1-A/VHP116Q.Seq.d/ 896 0.0
VHO360 (VHO360Q) /CSM/VH/VHO3-C/VHO360Q.Seq.d/ 896 0.0
VHM788 (VHM788Q) /CSM/VH/VHM7-D/VHM788Q.Seq.d/ 896 0.0
VHM540 (VHM540Q) /CSM/VH/VHM5-B/VHM540Q.Seq.d/ 896 0.0
VHL784 (VHL784Q) /CSM/VH/VHL7-D/VHL784Q.Seq.d/ 896 0.0
VHL116 (VHL116Q) /CSM/VH/VHL1-A/VHL116Q.Seq.d/ 896 0.0
VHK569 (VHK569Q) /CSM/VH/VHK5-C/VHK569Q.Seq.d/ 896 0.0

own update 2003. 1. 2
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 74 2e-09 1
AL033501|AL033501.1 C.albicans cosmid Ca41C10. 70 3e-08 1
AQ874658|AQ874658.1 V112D8 mTn-3xHA/lacZ Insertion Library, strain Y2278 Saccharomyces cerevisiae genomic 5', DNA sequence. 56 5e-08 2
AR016873|AR016873.1 Sequence 1 from patent US 5777201. 56 2e-07 2
Z72577|Z72577.1 S.cerevisiae chromosome VII reading frame ORF YGL055w. 56 5e-07 2
AL396412|AL396412.1 T3 end of clone AR0AA030B05 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii. 56 5e-04 1
J05676|J05676.1 Saccharomyces cerevisiae delta-9 fatty acid desaturase (OLE1) gene, complete cds. 56 5e-04 1
AB024576|AB024576.1 Pichia angusta H-OLE1 gene for delta9-fatty acid desaturase, complete cds. 54 0.002 1
BM027442|BM027442.1 GIT0000801 Root-induced cDNA library from Glomus intraradices Glomus intraradices cDNA, mRNA sequence. 54 0.002 1
CR318630|CR318630.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-225K7. 40 0.030 4
dna update 2004. 3.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY995173_1(AY995173|pid:none) Amylomyces rouxii delta-9 desatura... 147 2e-34
AB196774_1(AB196774|pid:none) Mortierella alpina gene for omega9... 136 2e-31
AC116984_117(AC116984|pid:none) Dictyostelium discoideum chromos... 131 7e-30
CR382123_238(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 128 9e-30
FJ695614_1(FJ695614|pid:none) Piriformospora indica delta 9-fatt... 131 9e-30
AB071696_2(AB071696|pid:none) Saccharomyces kluyveri Sk-SDS23 ge... 126 1e-29
DQ901954_1(DQ901954|pid:none) Aureobasidium pullulans putative d... 125 2e-29
D83185_1(D83185|pid:none) Pichia angusta DNA for delta 9-fatty a... 128 2e-29
CU928175_208(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 129 3e-29
Y18554_1(Y18554|pid:none) Mortierella alpina ole2 gene for stear... 129 5e-29
protein update 2009. 7.16
PSORT

psg: 0.91 gvh: 0.66 alm: 0.54 top: 0.43 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: extracellular, including cell wall
24.0 %: nuclear
8.0 %: cytoplasmic
8.0 %: mitochondrial
8.0 %: vacuolar
8.0 %: endoplasmic reticulum

>> prediction for VHL423 is exc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHL423Z
3' end seq.
>VHL423Z.Seq
NNNNNNNNNNTGGATTTTTCATCGCTGGTGTTGCCTCCAAAGTACTCATGATGCAATGTA
CCTTTTGTATCAACTCTTTGGCTCATTATCTTGGTGAAGCAACTTACACCGACCAAAGAT
CTCCACGTGACTCTTTTATCACATCTTTGGTCACTTTTGGTGAAGGTTATCATAACTTTC
ATCATGAATTCCCATATGATTACAGAAATGGTATTCATATGTCTGCTTACGATCCAGGTA
AGTGGTTAATCAATTTCCTTAGTTGGNTTGGTTTCGCCTATGAATTAAAGAGATTCCCAA
GTGAATTATTCGCAAAAGGTAAAATTCAAATGCAAGAGACAAACCATCAAAAAATTACGT
GATCAACTCTATTGGGGTAANCCATTGGATCAATTACCATCATTCACTCGTGCTCNAGTT
AAAGAGAAATGTCAAAAAGAAAAGAAACAACTCTTAATCATTGAAGATGTTATNTATGAT
AT
Length of 3' end seq. 482
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -