>VHL364 (VHL364Q) /CSM/VH/VHL3-C/VHL364Q.Seq.d/
XXXXXXXXXXTTAAAAAAGTAACCATTGCAGAGGCAAAAGAAATCTTTGAAAAACAATAT
AGAGACCTCTACACTGTCTCTCAAGATGTAACCAAATTGGCAATTCAATCGGCCGAACAA
AATGGTATTGTATTTTTGGATGAAATCGATAAGATTTGTACATCTCGTGAAAGTATAAAG
AATGGTGGTGACGCTTCAACCGATGGCGTTCAAAGAGATCTTCTTCCAATCGTTGAAGGT
TGTATGGTTAGCACAAAGTATGGTCAAATAGATACCAGTAGAATCTTATTCATTGCTTCA
GGTGCTTTCCATAATACTAAACCATCAGATCTCATTAGTGAATTACAAGGTCGTTTACCA
ATTCGTGTTGAACTTAAACCATTGGAACAAAAGGATTTCTATAAGATCTTAACTGAACCA
AAGAATAATCAAATTCAACAACAAAAAGCATTACTTAAAACTGAAGATATTCAATTGGAA
TTCACTGATGATGCATTGTTAGAAGTTGCAAAAATCGCTTTTGAAGCAAATGCTCAAGTT
CAAAATCTTGGCGCTAGAAGATTACATGGTATCATTGAACGTATCGTAGAGGATATAAGT
TTTAATTGNGATATTCATAAAGGTAAAACAGTTGTTTTAGATACTCCCGACATTAGAAAA
CATTTAAG

---KKVTIAEAKEIFEKQYRDLYTVSQDVTKLAIQSAEQNGIVFLDEIDKICTSRESIKN
GGDASTDGVQRDLLPIVEGCMVSTKYGQIDTSRILFIASGAFHNTKPSDLISELQGRLPI
RVELKPLEQKDFYKILTEPKNNQIQQQKALLKTEDIQLEFTDDALLEVAKIAFEANAQVQ
NLGARRLHGIIERIVEDISFNXDIHKGKTVVLDTPDIRKHL

Frame A:
---*ksnhcrgkrnl*kti*rplhclsrcnqignsigrtkwycifg*nr*dlyis*kyke
ww*rfnrwrskrsssnr*rlyg*hkvwsnryq*nlihcfrcfp*y*tirsh**itrsftn
sc*t*tigtkgfl*dln*tke*snsttksit*n*rysigih**civrscknrf*skcsss
kswr*kitwyh*tyrrgykf*lxys*r*nscfrysrh*ktfk


Frame B:
---KKVTIAEAKEIFEKQYRDLYTVSQDVTKLAIQSAEQNGIVFLDEIDKICTSRESIKN
GGDASTDGVQRDLLPIVEGCMVSTKYGQIDTSRILFIASGAFHNTKPSDLISELQGRLPI
RVELKPLEQKDFYKILTEPKNNQIQQQKALLKTEDIQLEFTDDALLEVAKIAFEANAQVQ
NLGARRLHGIIERIVEDISFNXDIHKGKTVVLDTPDIRKHL


Frame C:
---kk*plqrqkkslknnietstlslkm*pnwqfnrpnkmvlyfwmksirfvhlvkv*rm
vvtlqpmafkeiffqslkvvwlaqsmvk*ipvesysllqvlsiilnhqislvnykvvyqf
vlnlnhwnkrisirs*lnqriikfnnkkhylklkifnwnslmmhc*klqksllkqmlkfk
ilaledymvslnvs*ri*vlixifikvkqlf*ilptleni*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL364 (VHL364Q) /CSM/VH/VHL3-C/VHL364Q.Seq.d/                       1298   0.0
AHH566 (AHH566Q) /CSM/AH/AHH5-C/AHH566Q.Seq.d/                       1273   0.0
CFH353 (CFH353Q) /CSM/CF/CFH3-C/CFH353Q.Seq.d/                       1203   0.0
VHL386 (VHL386Q) /CSM/VH/VHL3-D/VHL386Q.Seq.d/                        426   e-118
VHG527 (VHG527Q) /CSM/VH/VHG5-B/VHG527Q.Seq.d/                        280   3e-74
CHK858 (CHK858Q) /CSM/CH/CHK8-C/CHK858Q.Seq.d/                         42   0.011
SSC795 (SSC795Q) /CSM/SS/SSC7-D/SSC795Q.Seq.d/                         40   0.042
CHN209 (CHN209Q) /CSM/CH/CHN2-A/CHN209Q.Seq.d/                         40   0.042
AHB765 (AHB765Q) /CSM/AH/AHB7-C/AHB765Q.Seq.d/                         40   0.042
AFM493 (AFM493Q) /CSM/AF/AFM4-D/AFM493Q.Seq.d/                         40   0.042

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U32731|U32731.1 Haemophilus influenzae Rd section 46 of 163 of the complete genome.    44   9e-06  3
AR274513|AR274513.1 Sequence 1 from patent US 6506581.             44   0.003  2
AE016952|AE016952.1 Enterococcus faecalis V583, section 6 of 11 of the complete genome.    36   0.007  2
BD193494|BD193494.1 Enterococcus faecialis polynucleotides and polypeptides.    36   0.008  2
AR394895|AR394895.1 Sequence 910 from patent US 6617156.           36   0.009  2
AC012235|AC012235.4 Homo sapiens clone RP11-15P11, WORKING DRAFT SEQUENCE, 29 unordered pieces.    40   0.022  3
AX652465|AX652465.1 Sequence 2335 from Patent WO03000898.          36   0.050  3
AX508459|AX508459.1 Sequence 3154 from Patent WO0216655.           36   0.050  3
AC008718|AC008718.4 Homo sapiens chromosome 5 clone CTB-87P9, WORKING DRAFT SEQUENCE, 9 ordered pieces.    36   0.054  6
AF270500|AF270500.1 Leptospira borgpetersenii HlsV (hslV) gene, complete cds; and HslU (hslU) gene, partial cds.    40   0.059  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001229_1499(CP001229|pid:none) Sulfurihydrogenibium azorense A...   234   2e-60
(B2V6B0) RecName: Full=ATP-dependent hsl protease ATP-binding su...   232   7e-60
CP000593_274(CP000593|pid:none) Ostreococcus lucimarinus CCE9901...   230   3e-59
CR954213_297(CR954213|pid:none) Ostreococcus tauri strain OTTH05...   226   4e-58
AM910989_46(AM910989|pid:none) Plasmodium knowlesi strain H chro...   221   1e-56
CP000394_2237(CP000394|pid:none) Granulibacter bethesdensis CGDN...   220   3e-56
(Q3A1V6) RecName: Full=ATP-dependent hsl protease ATP-binding su...   219   4e-56
EU221239_17(EU221239|pid:none) Uncultured marine bacterium EB000...   219   7e-56
CP000157_44(CP000157|pid:none) Erythrobacter litoralis HTCC2594,...   219   7e-56
AP010904_3838(AP010904|pid:none) Desulfovibrio magneticus RS-1 D...   219   7e-56

 psg: 0.38  gvh: 0.31  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal

>> prediction for VHL364 is cyt

>VHL364Z.Seq
NNNNNNNNNNTTAAAAAAGTAACCATTGCAGAGGCAAAAGAAATCTTTGAAAAACAATAT
AGAGACCTCTACACTGTCTCTCAAGATGTAACCAAATTGGCAATTCAATCGGCCGAACAA
AATGGTATTGTATTTTTGGATGAAATCGATAAGATTTGTACATCTCGTGAAAGTATAAAG
AATGGTGGTGACGCTTCAACCGATGGCGTTCAAAGAGATCTTCTTCCAATCGTTGAAGGT
TGTATGGTTAGCACAAAGTATGGTCAAATAGATACCAGTAGAATCTTATTCATTGCTTCA
GGTGCTTTCCATAATACTAAACCATCAGATCTCATTAGTGAATTACAAGGTCGTTTACCA
ATTCGTGTTGAACTTAAACCATTGGAACAAAAGGATTTCTATAAGATCTTAACTGAACCA
AAGAATAATCAAATTCAACAACAAAAAGCATTACTTAAAACTGAAGATATTCAATTGGAA
TTCACTGATGATGCATTGTTAGAAGTTGCAAAAATCGCTTTTGAAGCAAATGCTCAAGTT
CAAAATCTTGGCGCTAGAAGATTACATGGTATCATTGAACGTATCGTAGAGGATATAAGT
TTTAATTGNGATATTCATAAAGGTAAAACAGTTGTTTTAGATACTCCCGACATTAGAAAA
CATTTAAG