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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHL358
Library VH
(Link to library)
Clone ID VHL358
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11170-1
Original site URL
Representative seq. ID VHL358P
(Link to Original site)
Representative DNA sequence 
>VHL358 (VHL358Q) /CSM/VH/VHL3-C/VHL358Q.Seq.d/
CACTGTTGGCCTACTGGAATTTTTTTTTAATTTCAAATTAACACGCACATATCATTAAAA
TATTAATATAATCCATCAAGAACTTATATTTATTTATTTATAATATTTTTTTAAGAGGAT
TACAATACACTATTAAAGTGTTGTATTAGTATAAAAAAAAAAXXXXXXXXXXTGGTGGTG
GTGGTAAAGTTCAAGCACCAGTTAATAAAGGTTGTTGTATTTGGTGGTGATAGATCACAA
GCCAATTCAAATTAGTGGAGCATTTACAAGATTCCAAGGTAGAATTAATTTAGAATTAAA
TCTTTTGAATACAAGTCAACAAGGTATGTCAAAATTCAAGATTCAATTTTATCAAAATAG
TTTTGGTATTTCACCAGCTGATCAAATCTTATCATGTGGTGCTATTGAAGTAGGCCAAAG
CACTGATGTCACAATTCCAATCTCATGCAATGGTCAAATCTCAAATCCATTGAATCCAGT
CATTGATATGGCAATGATGGTATTACCAAGTCAAGAGAGATTCTACTTTAAGATGAATTT
CCCATTACTTTGTCTATTGACAGAAACTGGTCGTCTCGATCGTGAATCTTATTTATCCAT
GTGGAAATCAATTCCAGAATCAAATGAACGTTCAGTTGAAATTCAAGTACGTTTACCACA
TGTAGATGTTGACTCTATCCTTCGTCGTTTAAATAGTAAGAATA
sequence update 2002.10.25
Translated Amino Acid sequence 
hcwptgiff*fqinthislky*ynpsrtyiylfiiff*EDYNTLLKCCISIKKK---

---VVVVKFKHQLIKVVVFGGDRSQANSN*wsiykipr*n*friksfeykstryvkiqds
ilsk*fwyfts*snlimwcy*srpkh*chnsnlmqwsnlksiessh*ygndgitksreil
l*defpitlsidrnwssrs*ilfihveinsrik*tfs*nsstfttcrc*lypssfk**e
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwptgiff*fqinthislky*ynpsrtyiylfiiff*EDYNTLLKCCISIKKK---

---wwww*sssts**rllylvvidhkpiqisgaftrfqgrinlelnllntsqqgmskfki
qfyqnsfgispadqilscgaievgqstdvtipiscngqisnplnpvidmammvlpsqerf
yfkmnfpllclltetgrldresylsmwksipesnersveiqvrlphvdvdsilrrlnskn

Frame B:
tvgllefffnfkltrtyh*niniihqelifiyl*yffkritihy*svvlv*kk---

---ggggkvqapvnkgcciww**itsqfklvehlqdskveli*n*if*iqvnkvcqnsrf
nfikivlvfhqliksyhvvllk*akalmsqfqshamvksqih*iqsliwq*wyyqvkrds
tlr*ishyfvy*qklvvsivnliypcgnqfqnqmnvqlkfkyvyhm*mltlsfvv*ivri

Frame C:
llaywnfflisn*hahiikili*siknlylfiyniflrglqytikvly*ykkk---

---VVVVKFKHQLIKVVVFGGDRSQANSN*wsiykipr*n*friksfeykstryvkiqds
ilsk*fwyfts*snlimwcy*srpkh*chnsnlmqwsnlksiessh*ygndgitksreil
l*defpitlsidrnwssrs*ilfihveinsrik*tfs*nsstfttcrc*lypssfk**e
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL358 (VHL358Q) /CSM/VH/VHL3-C/VHL358Q.Seq.d/                       1055   0.0
VHP238 (VHP238Q) /CSM/VH/VHP2-B/VHP238Q.Seq.d/                       1023   0.0
VHM229 (VHM229Q) /CSM/VH/VHM2-B/VHM229Q.Seq.d/                       1023   0.0
VHD896 (VHD896Q) /CSM/VH/VHD8-D/VHD896Q.Seq.d/                       1023   0.0
VHB374 (VHB374Q) /CSM/VH/VHB3-D/VHB374Q.Seq.d/                       1023   0.0
VHA862 (VHA862Q) /CSM/VH/VHA8-C/VHA862Q.Seq.d/                       1023   0.0
SHG413 (SHG413Q) /CSM/SH/SHG4-A/SHG413Q.Seq.d/                       1023   0.0
SHF674 (SHF674Q) /CSM/SH/SHF6-D/SHF674Q.Seq.d/                       1023   0.0
SHF453 (SHF453Q) /CSM/SH/SHF4-C/SHF453Q.Seq.d/                       1023   0.0
SHD872 (SHD872Q) /CSM/SH/SHD8-C/SHD872Q.Seq.d/                       1023   0.0
own update 2003. 1. 2
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ443618) Dictyostelium discoideum cDNA clone:ddv53d15, 3' ...  1055   0.0    1
(BJ403267) Dictyostelium discoideum cDNA clone:dds24g17, 3' ...   916   0.0    3
(BJ436927) Dictyostelium discoideum cDNA clone:ddv32l16, 3' ...   916   0.0    3
(BJ405280) Dictyostelium discoideum cDNA clone:dds31m04, 3' ...   916   0.0    3
(BJ406584) Dictyostelium discoideum cDNA clone:dds35c20, 3' ...   916   0.0    3
(BJ446020) Dictyostelium discoideum cDNA clone:ddv61k10, 3' ...   916   0.0    3
(BJ406690) Dictyostelium discoideum cDNA clone:dds36j04, 3' ...   916   0.0    3
(BJ437284) Dictyostelium discoideum cDNA clone:ddv33d19, 3' ...   916   0.0    3
(BJ405450) Dictyostelium discoideum cDNA clone:dds31p18, 3' ...   916   0.0    3
(BJ406240) Dictyostelium discoideum cDNA clone:dds34j14, 3' ...   916   0.0    3
dna update 2008.11.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54X82) RecName: Full=AP-1 complex subunit beta; AltName: Full=...   305   3e-85
(P62944) RecName: Full=AP-2 complex subunit beta-1; AltName: Ful...   103   5e-21
CR860139_1(CR860139|pid:none) Pongo abelii mRNA; cDNA DKFZp469O1...   103   5e-21
(Q08DS7) RecName: Full=AP-1 complex subunit beta-1; AltName: Ful...   103   5e-21
AY341427_1(AY341427|pid:none) Homo sapiens beta adaptin subunit ...   103   5e-21
(P63009) RecName: Full=AP-2 complex subunit beta-1; AltName: Ful...   103   5e-21
BC012150_1(BC012150|pid:none) Homo sapiens, clone IMAGE:4558274,...   103   5e-21
AK304126_1(AK304126|pid:none) Homo sapiens cDNA FLJ55646 complet...   103   5e-21
CR749392_1(CR749392|pid:none) Homo sapiens mRNA; cDNA DKFZp781K0...   103   7e-21
AB462935_1(AB462935|pid:none) Synthetic construct DNA, clone: pF...   100   4e-20
protein update 2009. 7.16
PSORT 

 psg: 0.75  gvh: 0.37  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.09  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for VHL358 is cyt
5' end seq. ID VHL358F
5' end seq. 
>VHL358F.Seq
CACTGTTGGCCTACTGGAATTTTTTTTTAATTTCAAATTAACACGCACATATCATTAAAA
TATTAATATAATCCATCAAGAACTTATATTTATTTATTTATAATATTTTTTTAAGAGGAT
TACAATACACTATTAAAGTGTTGTATTAGTATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 172
3' end seq. ID VHL358Z
3' end seq. 
>VHL358Z.Seq
NNNNNNNNNNTGGTGGTGGTGGTAAAGTTCAAGCACCAGTTAATAAAGGTTGTTGTATTT
GGTGGTGATAGATCACAAGCCAATTCAAATTAGTGGAGCATTTACAAGATTCCAAGGTAG
AATTAATTTAGAATTAAATCTTTTGAATACAAGTCAACAAGGTATGTCAAAATTCAAGAT
TCAATTTTATCAAAATAGTTTTGGTATTTCACCAGCTGATCAAATCTTATCATGTGGTGC
TATTGAAGTAGGCCAAAGCACTGATGTCACAATTCCAATCTCATGCAATGGTCAAATCTC
AAATCCATTGAATCCAGTCATTGATATGGCAATGATGGTATTACCAAGTCAAGAGAGATT
CTACTTTAAGATGAATTTCCCATTACTTTGTCTATTGACAGAAACTGGTCGTCTCGATCG
TGAATCTTATTTATCCATGTGGAAATCAATTCCAGAATCAAATGAACGTTCAGTTGAAAT
TCAAGTACGTTTACCACATGTAGATGTTGACTCTATCCTTCGTCGTTTAAATAGTAAGAA
TA
Length of 3' end seq. 542
Connected seq. ID VHL358P
Connected seq. 
>VHL358P.Seq
CACTGTTGGCCTACTGGAATTTTTTTTTAATTTCAAATTAACACGCACATATCATTAAAA
TATTAATATAATCCATCAAGAACTTATATTTATTTATTTATAATATTTTTTTAAGAGGAT
TACAATACACTATTAAAGTGTTGTATTAGTATAAAAAAAAAA----------TGGTGGTG
GTGGTAAAGTTCAAGCACCAGTTAATAAAGGTTGTTGTATTTGGTGGTGATAGATCACAA
GCCAATTCAAATTAGTGGAGCATTTACAAGATTCCAAGGTAGAATTAATTTAGAATTAAA
TCTTTTGAATACAAGTCAACAAGGTATGTCAAAATTCAAGATTCAATTTTATCAAAATAG
TTTTGGTATTTCACCAGCTGATCAAATCTTATCATGTGGTGCTATTGAAGTAGGCCAAAG
CACTGATGTCACAATTCCAATCTCATGCAATGGTCAAATCTCAAATCCATTGAATCCAGT
CATTGATATGGCAATGATGGTATTACCAAGTCAAGAGAGATTCTACTTTAAGATGAATTT
CCCATTACTTTGTCTATTGACAGAAACTGGTCGTCTCGATCGTGAATCTTATTTATCCAT
GTGGAAATCAATTCCAGAATCAAATGAACGTTCAGTTGAAATTCAAGTACGTTTACCACA
TGTAGATGTTGACTCTATCCTTCGTCGTTTAAATAGTAAGAATA
Length of connected seq. 694
Full length Seq ID -
Full length Seq. -
Length of full length seq. -