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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHL317
Library VH
(Link to library)
Clone ID VHL317
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16521-1
Original site URL
Representative seq. ID VHL317P
(Link to Original site)
Representative DNA sequence 
>VHL317 (VHL317Q) /CSM/VH/VHL3-A/VHL317Q.Seq.d/
AATAGGGTGTTTCAAGAGTTACATTTATTAGACCCGAAACCAAGCGATCTAATTATGAAC
ACGCATTTTATTATTTTTATTTTAATTTGGCGGAACCCGTAACTGTTGCAAAAGTTTGGG
ATGATTTGTGATTAGGGGTGAAAGGCTAATCAAGCTTGGTGATAGCTGGTTTTTTACGAA
ATCTATCTAGGTAGAACGGTGGTATATTGTTTATTATTATTTGAAAAAGTCTTAATAAAC
ATTATTAAAGCAATTTAATAAAAGAAAATTTATAGAGGTAGAGCACTGAATGGTTCAACC
TAAGGTTATTATTTAAACTTCGAATACTATAAATAAATTGACCACTAGGCAGACTATGAG
CGCTAAGGTCCATAGGTCTAAAGGGAAACAGCCCAGATTGTAAGTTAATGTTCTTAAATA
ATAGTGTAGTGTCAAAGGCATGGAGAAAGTGATGTTAATTGGAAAGTAGGATTGGAAGCG
ACCATCTTTTAAAGAAAGCGTAAAAGCTCACCAATTTAAGGCGTTCTCTAGCCAACAATG
TACAGGAACTCAACATTATACAGAAACTACAAAATTATAACATTGGTAGTAAAATGTTCC
GTATAATTGTGAAGXXXXXXXXXXAAACTGGTTAGTTATTTGGTGAGTGTAATGGCATAA
GTTTGCTTGACTGAAAGACCTACAAGTCGATCAGAGACGCAAGTCGATCATAGTGATCCA
ATAGTTCTGTGTGGAAAGGCTATTGCTAACGGATAAAAGGTACGCTAGGGATAACAGGCT
AGTCACATATTAGAGTTCATATCTGTTATGTGGTTCGGCACCTCGATGTCGGCTTAACAC
ATCCCGGAGTTGAAAAAGTTTCCAAGGGTTGGGGTGTTCACCCATTAAAGTGTTACATGA
GCTGGGTTTAAAACGTCGTGAGACAGTTTGGTCCCTATCTACTGTTAAAAACGAAAAAAT
TAAAATCCTTCCTTTAGTACGAGAGGACTGAGGTGGGTCGATCACTGGTGTATTAATTAT
TATAACAATAGTACCGTTAAGTAGCTACATCGAAATATTAATAATATATAGTATTATTAA
GAGAGAACTGCTGAAAAAATATTAAGTAGGAAACTTATTTTAGATTTTTTTATAGTCAGG
TAAAAGATTATTACTTTGATAGGCTACATATAGAAATGAATAGTAATATAATATAAAAAT
TNAAAAAATTTTTCCATTATTCTATAATTAATGNATCTATTTATTAAGATAGTAAAGAGT
ACTAAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
*gvsrvtfirpetkrsnyehafyyfyfnlaepvtvakvwddl*lgvkg*sslviagflrn
lsr*nggilfiii*kslnkhy*snlikenl*r*stewfnlrllfklril*in*plgrl*a
lrsiglkgnspdcklmflnnsvvskawrk*c*lesrigsdhllkka*KLTNLRRSLANNV
QELNIIQKLQNYNIGSKMFRIIVK---

---KLVSYLVSVMA*vclterptsrsetqvdhsdpivlcgkaiang*kvr*g*qashile
fisvmwfgtsmsa*hipelkkfprvgvfth*svt*agfkts*dslvpiyc*krkn*npsf
strglrwvdhwcinyynnstvk*lhrninni*yy*ertaekilsrklildffivr*kiit
ligyi*k*ivi*yknxknfsiil*lmxlfikivkstk
Translated Amino Acid sequence (All Frames) 
Frame A:
nrvfqelhlldpkpsdlimnthfiifiliwrnp*llqkfgmicd*g*kanqaw**lvfye
iylgrtvvyclllfekvliniikai**kkiyrgralngst*gyylnfeyyk*idh*adye
r*gp*v*retaqivs*cs*iiv*cqrhgesdvnwkvgleatif*rkrksspi*gvl*ptm
yrnstlyrnykiitlvvkcsv*l*---

---KLVSYLVSVMA*vclterptsrsetqvdhsdpivlcgkaiang*kvr*g*qashile
fisvmwfgtsmsa*hipelkkfprvgvfth*svt*agfkts*dslvpiyc*krkn*npsf
strglrwvdhwcinyynnstvk*lhrninni*yy*ertaekilsrklildffivr*kiit
ligyi*k*ivi*yknxknfsiil*lmxlfikivkstk

Frame B:
igcfksyiy*trnqai*l*trillflf*fggtrncckslg*fvirgerliklgdswfftk
si*verwyivyyylkks**tllkqfnkrkfieveh*mvqpkvii*tsntinklttrqtms
akvhrskgkqprl*vnvlk**csvkgmekvmligk*dwkrpsfkesvkahqfkafssqqc
tgtqhytettkl*hw**nvpynce---

---nwlviw*v*whkfa*lkdlqvdqrrksiiviq*fcverllltdkryardnrlvty*s
syllcgsaprcrlntsrs*ksfqglgcspikvlhelglkrretvwslstvknekikilpl
vred*ggsitgvliiitivplssyieiliiysiikrellkky*vgnlf*ifl*sgkrlll
**atyrne**ynikixkifplfyn*xiyllr**rvln

Frame C:
*gvsrvtfirpetkrsnyehafyyfyfnlaepvtvakvwddl*lgvkg*sslviagflrn
lsr*nggilfiii*kslnkhy*snlikenl*r*stewfnlrllfklril*in*plgrl*a
lrsiglkgnspdcklmflnnsvvskawrk*c*lesrigsdhllkka*KLTNLRRSLANNV
QELNIIQKLQNYNIGSKMFRIIVK---

---tg*lfgecngislld*ktyksirdasrs**snssvwkgyc*rikgtlgitg*shirv
hicyvvrhldvglthpgvekvskgwgvhplkcymswv*nvvrqfgpylllktkklksfl*
yertevgrslvy*ll*q*yr*vatsky**yivllrenc*knik*etyfrffysqvkdyyf
drlhiemnsnii*kxkkffhysiinxsiy*dskey*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL317 (VHL317Q) /CSM/VH/VHL3-A/VHL317Q.Seq.d/                       1641   0.0
VHO432 (VHO432Q) /CSM/VH/VHO4-B/VHO432Q.Seq.d/                       1035   0.0
MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/              1027   0.0
AFF514 (AFF514Q) /CSM/AF/AFF5-A/AFF514Q.Seq.d/                        848   0.0
CHF548 (CHF548Q) /CSM/CH/CHF5-B/CHF548Q.Seq.d/                        779   0.0
SHG307 (SHG307Q) /CSM/SH/SHG3-A/SHG307Q.Seq.d/                        638   0.0
CFA667 (CFA667Q) /CSM/CF/CFA6-C/CFA667Q.Seq.d/                        638   0.0
AFJ856 (AFJ856Q) /CSM/AF/AFJ8-C/AFJ856Q.Seq.d/                        638   0.0
CHI887 (CHI887Q) /CSM/CH/CHI8-D/CHI887Q.Seq.d/                        605   e-172
VFE275 (VFE275Q) /CSM/VF/VFE2-D/VFE275Q.Seq.d/                        541   e-153
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ424610) Dictyostelium discoideum cDNA clone:ddv53b05, 5' ...  1041   0.0    2
(BJ426562) Dictyostelium discoideum cDNA clone:ddv59p08, 5' ...  1033   0.0    1
(U21880) Dictyostelium discoideum mitochondrion large subuni...   882   0.0    3
(D16466) Dictyostelium discoideum mitochondrial genes for la...   882   0.0    3
(AB000109) Dictyostelium discoideum mitochondrial DNA, compl...   882   0.0    3
(DQ336395) Dictyostelium citrinum mitochondrion, complete ge...   658   0.0    9
(BJ443465) Dictyostelium discoideum cDNA clone:ddv53b05, 3' ...   638   0.0    3
(BJ406707) Dictyostelium discoideum cDNA clone:dds36n01, 3' ...   638   0.0    4
(BJ378991) Dictyostelium discoideum cDNA clone:ddc33o11, 3' ...   638   0.0    4
(BJ373287) Dictyostelium discoideum cDNA clone:ddc2e18, 3' e...   638   0.0    4
dna update 2008.11.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU754742_1(EU754742|pid:none) Candidatus Liberibacter americanus...    67   1e-18
AP009386_1890(AP009386|pid:none) Burkholderia multivorans ATCC 1...    69   3e-17
CP000789_180(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 chr...    69   4e-16
AP010904_342(AP010904|pid:none) Desulfovibrio magneticus RS-1 DN...    86   4e-15
AE017197_194(AE017197|pid:none) Rickettsia typhi str. Wilmington...    71   9e-15
AE016795_1006(AE016795|pid:none) Vibrio vulnificus CMCP6 chromos...    69   1e-14
CP001172_16(CP001172|pid:none) Acinetobacter baumannii AB307-029...    69   4e-10
CP000155_1516(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...    65   5e-09
AC151668_11(AC151668|pid:none) Medicago truncatula clone mth2-6e...    62   3e-08
AM085146_13(AM085146|pid:none) Magnetospirillum gryphiswaldense ...    60   7e-08
protein update 2009. 7.16
PSORT 

 psg: 0.61  gvh: 0.29  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.46  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 32.0 %: nuclear
	 16.0 %: cytoplasmic
	 12.0 %: cytoskeletal

>> prediction for VHL317 is mit
5' end seq. ID VHL317F
5' end seq. 
>VHL317F.Seq
AATAGGGTGTTTCAAGAGTTACATTTATTAGACCCGAAACCAAGCGATCTAATTATGAAC
ACGCATTTTATTATTTTTATTTTAATTTGGCGGAACCCGTAACTGTTGCAAAAGTTTGGG
ATGATTTGTGATTAGGGGTGAAAGGCTAATCAAGCTTGGTGATAGCTGGTTTTTTACGAA
ATCTATCTAGGTAGAACGGTGGTATATTGTTTATTATTATTTGAAAAAGTCTTAATAAAC
ATTATTAAAGCAATTTAATAAAAGAAAATTTATAGAGGTAGAGCACTGAATGGTTCAACC
TAAGGTTATTATTTAAACTTCGAATACTATAAATAAATTGACCACTAGGCAGACTATGAG
CGCTAAGGTCCATAGGTCTAAAGGGAAACAGCCCAGATTGTAAGTTAATGTTCTTAAATA
ATAGTGTAGTGTCAAAGGCATGGAGAAAGTGATGTTAATTGGAAAGTAGGATTGGAAGCG
ACCATCTTTTAAAGAAAGCGTAAAAGCTCACCAATTTAAGGCGTTCTCTAGCCAACAATG
TACAGGAACTCAACATTATACAGAAACTACAAAATTATAACATTGGTAGTAAAATGTTCC
GTATAATTGTGAAGNNNNNNNNNN
Length of 5' end seq. 624
3' end seq. ID VHL317Z
3' end seq. 
>VHL317Z.Seq
NNNNNNNNNNAAACTGGTTAGTTATTTGGTGAGTGTAATGGCATAAGTTTGCTTGACTGA
AAGACCTACAAGTCGATCAGAGACGCAAGTCGATCATAGTGATCCAATAGTTCTGTGTGG
AAAGGCTATTGCTAACGGATAAAAGGTACGCTAGGGATAACAGGCTAGTCACATATTAGA
GTTCATATCTGTTATGTGGTTCGGCACCTCGATGTCGGCTTAACACATCCCGGAGTTGAA
AAAGTTTCCAAGGGTTGGGGTGTTCACCCATTAAAGTGTTACATGAGCTGGGTTTAAAAC
GTCGTGAGACAGTTTGGTCCCTATCTACTGTTAAAAACGAAAAAATTAAAATCCTTCCTT
TAGTACGAGAGGACTGAGGTGGGTCGATCACTGGTGTATTAATTATTATAACAATAGTAC
CGTTAAGTAGCTACATCGAAATATTAATAATATATAGTATTATTAAGAGAGAACTGCTGA
AAAAATATTAAGTAGGAAACTTATTTTAGATTTTTTTATAGTCAGGTAAAAGATTATTAC
TTTGATAGGCTACATATAGAAATGAATAGTAATATAATATAAAAATTNAAAAAATTTTTC
CATTATTCTATAATTAATGNATCTATTTATTAAGATAGTAAAGAGTACTAAAT
Length of 3' end seq. 653
Connected seq. ID VHL317P
Connected seq. 
>VHL317P.Seq
AATAGGGTGTTTCAAGAGTTACATTTATTAGACCCGAAACCAAGCGATCTAATTATGAAC
ACGCATTTTATTATTTTTATTTTAATTTGGCGGAACCCGTAACTGTTGCAAAAGTTTGGG
ATGATTTGTGATTAGGGGTGAAAGGCTAATCAAGCTTGGTGATAGCTGGTTTTTTACGAA
ATCTATCTAGGTAGAACGGTGGTATATTGTTTATTATTATTTGAAAAAGTCTTAATAAAC
ATTATTAAAGCAATTTAATAAAAGAAAATTTATAGAGGTAGAGCACTGAATGGTTCAACC
TAAGGTTATTATTTAAACTTCGAATACTATAAATAAATTGACCACTAGGCAGACTATGAG
CGCTAAGGTCCATAGGTCTAAAGGGAAACAGCCCAGATTGTAAGTTAATGTTCTTAAATA
ATAGTGTAGTGTCAAAGGCATGGAGAAAGTGATGTTAATTGGAAAGTAGGATTGGAAGCG
ACCATCTTTTAAAGAAAGCGTAAAAGCTCACCAATTTAAGGCGTTCTCTAGCCAACAATG
TACAGGAACTCAACATTATACAGAAACTACAAAATTATAACATTGGTAGTAAAATGTTCC
GTATAATTGTGAAG----------AAACTGGTTAGTTATTTGGTGAGTGTAATGGCATAA
GTTTGCTTGACTGAAAGACCTACAAGTCGATCAGAGACGCAAGTCGATCATAGTGATCCA
ATAGTTCTGTGTGGAAAGGCTATTGCTAACGGATAAAAGGTACGCTAGGGATAACAGGCT
AGTCACATATTAGAGTTCATATCTGTTATGTGGTTCGGCACCTCGATGTCGGCTTAACAC
ATCCCGGAGTTGAAAAAGTTTCCAAGGGTTGGGGTGTTCACCCATTAAAGTGTTACATGA
GCTGGGTTTAAAACGTCGTGAGACAGTTTGGTCCCTATCTACTGTTAAAAACGAAAAAAT
TAAAATCCTTCCTTTAGTACGAGAGGACTGAGGTGGGTCGATCACTGGTGTATTAATTAT
TATAACAATAGTACCGTTAAGTAGCTACATCGAAATATTAATAATATATAGTATTATTAA
GAGAGAACTGCTGAAAAAATATTAAGTAGGAAACTTATTTTAGATTTTTTTATAGTCAGG
TAAAAGATTATTACTTTGATAGGCTACATATAGAAATGAATAGTAATATAATATAAAAAT
TNAAAAAATTTTTCCATTATTCTATAATTAATGNATCTATTTATTAAGATAGTAAAGAGT
ACTAAAT
Length of connected seq. 1257
Full length Seq ID -
Full length Seq. -
Length of full length seq. -