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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHL279
Library VH
(Link to library)
Clone ID VHL279
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11418-1|Contig-U13729-1
Original site URL
Representative seq. ID VHL279P
(Link to Original site)
Representative DNA sequence 
>VHL279 (VHL279Q) /CSM/VH/VHL2-D/VHL279Q.Seq.d/
ATTTTACAGATTAACAAGCACTTCACACCAAATCACCAATGATGACCATACAAAAGATAT
TCTCTTTAATTTATTCGGAAATGTAAATAGATGTGGTACTTTCGGTACATCAACATTAAG
TTATCAATCATGTATTTTAACAGTTGCTAATAAAGCGATCAATTATAAACTAGATTCAAG
ATATGCAACATCACCAAAATCAGTTATGGTAGGATCTCTCAGTCAACCAAGAACAATTAC
ATTTACAAATGATGTAATAACCATAATTTATAGTTCAACAACTGGTTTCACAGAATGCTC
ATCAAATGGTAACAAATATTCATCAAAGTATATTTTAATTTGTGATCCATTCACAGAATA
TTATGTAGATAAATTTACATTAGAATCACAATGTATTTATCAAATCAAAGTTTATACTAA
ATACGCATGTCCAACATTACGTTTATTCAAACAAACACAATATTATGATCTTTCGCCATT
GATGTTGGATTCAGCAAGAAATTATACAACAAGTCACTTTACAGACGGATCTGAGTTTTT
TATTGTATTCAATATTGGTAATAAAGCACAAATGTGTAGCGATGCATTAAATGATTATTA
TTTTTCTTGTCAXXXXXXXXXXATAACCAATATCACCATTTATCCATATATCGATAATAT
TGAAAAAGAAACAATATATTGTGAAATTGAAAAGTATTGTCCAAGTTCATCAAAAATTCC
ATCGATTCCAGAATCAGCAGTAGGTCATCCATGTATTGATTCAACAGTTTACTCTGAGAA
TTCTCAGTTTATAAGGTACAAATTTTATTCCAGCCTCGCTTGCAGATCAAATTAATAATC
AATCATTAATTGGTTCACCAAATTCAGTCACGTTTAATAATGTTTTATCTTCATCATGGA
AATGGATTAACTCAACACATGTAAAAGCCATCGTACAAAAAGGTATTGGAGCAATCCTTA
CAATTGTAAATGTTGGAAGCCAAAGTACTGAAACGAGTCCATATCCCGTAATTTTTTATA
AACAACCTGAATTAGATAATAAAAAATATGAAAACTTTGCAAATAGTAATATTTTAATAA
CTGGTTCTAATTTTGTACCAGTTAGTGTTTCAGCAGGTTCATCAAGTTCTGTCAAAATCG
GAGGTATTCCCTGTAACTCTGTAACATGGGTAGATTCAAAATCTGTTATTTGTAATGTAC
TAATTGGAACTGGTNATAATTTAAATATCCAAGTAACAGTGGAGGTCAACAAACCGAATT
AAAGNATATTTCTCANATTTAGGGCAAGGCGATTTCCTCTGTAGCGATTATCAAATTA
sequence update 2002.10.25
Translated Amino Acid sequence 
FYRLTSTSHQITNDDHTKDILFNLFGNVNRCGTFGTSTLSYQSCILTVANKAINYKLDSR
YATSPKSVMVGSLSQPRTITFTNDVITIIYSSTTGFTECSSNGNKYSSKYILICDPFTEY
YVDKFTLESQCIYQIKVYTKYACPTLRLFKQTQYYDLSPLMLDSARNYTTSHFTDGSEFF
IVFNIGNKAQMCSDALNDYYFSC---

---ITNITIYPYIDNIEKETIYCEIEKYCPSSSKIPSIPESAVGHPCIDSTVYSENSQFI
RYKFYSSLACRSN**siinwftkfshv**cfifimemd*lntckshrtkrywsnpynckc
wkpky*nesisrnfl*tt*ir**ki*klck**yfnnwf*fcts*cfsrfikfcqnrrysl
*lcnmgrfkicyl*ctnwnwx*fkypsnsggqqtelkxisxi*gkaissvaiikl
Translated Amino Acid sequence (All Frames) 
Frame A:
ilqinkhftpnhq**pykrysl*firkck*mwyfryiniklsimyfnsc**sdql*trfk
icnitkisygrisqstknnyiyk*cnnhnl*fnnwfhrmlikw*qifikvyfnl*sihri
lcr*iyiritmylsnqsly*irmsnitfiqtntil*sfaidvgfskklynkslyrri*vf
yciqyw**stnv*rcik*llffls---

---ITNITIYPYIDNIEKETIYCEIEKYCPSSSKIPSIPESAVGHPCIDSTVYSENSQFI
RYKFYSSLACRSN**siinwftkfshv**cfifimemd*lntckshrtkrywsnpynckc
wkpky*nesisrnfl*tt*ir**ki*klck**yfnnwf*fcts*cfsrfikfcqnrrysl
*lcnmgrfkicyl*ctnwnwx*fkypsnsggqqtelkxisxi*gkaissvaiikl

Frame B:
FYRLTSTSHQITNDDHTKDILFNLFGNVNRCGTFGTSTLSYQSCILTVANKAINYKLDSR
YATSPKSVMVGSLSQPRTITFTNDVITIIYSSTTGFTECSSNGNKYSSKYILICDPFTEY
YVDKFTLESQCIYQIKVYTKYACPTLRLFKQTQYYDLSPLMLDSARNYTTSHFTDGSEFF
IVFNIGNKAQMCSDALNDYYFSC---

---*pispfihisiilkkkqyivklksivqvhqkfhrfqnqq*vihvliqqftlrilsl*
gtnfipasladqinnqsligspnsvtfnnvlssswkwinsthvkaivqkgigailtivnv
gsqstetspypvifykqpeldnkkyenfansnilitgsnfvpvsvsagssssvkiggipc
nsvtwvdsksvicnvligtgxnlniqvtvevnkpn*xiflxfrarrfpl*rlsn

Frame C:
ftd*qalhtkspmmtiqkifsliysem*idvvlsvhqh*vinhvf*qllikrsiin*iqd
mqhhqnqlw*dlsvnqeqlhlqmm**p*fivqqlvsqnahqmvtnihqsif*fvihsqni
m*inlh*nhnvfikskfilnthvqhyvysnkhnimifrh*cwiqqeiiqqvtlqtdlsfl
lysilvikhkcvamh*miiiflv---

---nqyhhlsiyr*y*krnnil*n*kvlskfiknsidsrissrssmy*fnsll*efsvyk
vqilfqprlqikliinh*lvhqiqsrlimfylhhgngltqhm*kpsykkvleqslql*ml
eakvlkrvhip*ffinnln*iiknmktlqivif**lvlilyqlvfqqvhqvlsksevfpv
tl*hg*iqnllfvmy*lelvii*isk*qwrstnrikxyfsxlgqgdflcsdyqi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL279 (VHL279Q) /CSM/VH/VHL2-D/VHL279Q.Seq.d/                       2535   0.0
VHB141 (VHB141Q) /CSM/VH/VHB1-B/VHB141Q.Seq.d/                       1199   0.0
AHQ549 (AHQ549Q) /CSM/AH/AHQ5-C/AHQ549Q.Seq.d/                       1199   0.0
VHA774 (VHA774Q) /CSM/VH/VHA7-D/VHA774Q.Seq.d/                       1191   0.0
AHJ355 (AHJ355Q) /CSM/AH/AHJ3-C/AHJ355Q.Seq.d/                       1189   0.0
VHB491 (VHB491Q) /CSM/VH/VHB4-D/VHB491Q.Seq.d/                       1039   0.0
VHE714 (VHE714Q) /CSM/VH/VHE7-A/VHE714Q.Seq.d/                       1021   0.0
VHA689 (VHA689Q) /CSM/VH/VHA6-D/VHA689Q.Seq.d/                       1021   0.0
VHN859 (VHN859Q) /CSM/VH/VHN8-C/VHN859Q.Seq.d/                        963   0.0
VHH151 (VHH151Q) /CSM/VH/VHH1-C/VHH151Q.Seq.d/                        858   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ443729) Dictyostelium discoideum cDNA clone:ddv53m20, 3' ...  1362   0.0    1
(BJ424886) Dictyostelium discoideum cDNA clone:ddv53m20, 5' ...  1213   0.0    1
(BJ418570) Dictyostelium discoideum cDNA clone:ddv33a11, 5' ...  1199   0.0    1
(BJ339194) Dictyostelium discoideum cDNA clone:dda64a13, 5' ...  1199   0.0    1
(BJ418442) Dictyostelium discoideum cDNA clone:ddv32d19, 5' ...  1191   0.0    1
(BJ335295) Dictyostelium discoideum cDNA clone:dda49n13, 5' ...  1189   0.0    1
(BJ353302) Dictyostelium discoideum cDNA clone:dda49n13, 3' ...  1092   0.0    2
(BJ418736) Dictyostelium discoideum cDNA clone:ddv33f24, 5' ...  1039   0.0    1
(BJ420703) Dictyostelium discoideum cDNA clone:ddv40l03, 5' ...  1021   0.0    1
(BJ418429) Dictyostelium discoideum cDNA clone:ddv32a24, 5' ...  1021   0.0    1
dna update 2008.11.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY454940_1(AY454940|pid:none) Gorilla gorilla clone 22 olfactory...    39   0.42
AX466639_1(AX466639|pid:none) Sequence 121 from Patent WO0212343.      39   0.42
(Q8NGS5) RecName: Full=Olfactory receptor 13C4; AltName: Full=Ol...    37   1.2
AF399602_1(AF399602|pid:none) Homo sapiens clone OR13C4 olfactor...    37   1.2
AX466629_1(AX466629|pid:none) Sequence 111 from Patent WO0212343.      37   1.2
AF339159_1(AF339159|pid:none) Macropus rufogriseus mannose-6-pho...    37   1.2
AL772397_1(AL772397|pid:none) Mouse DNA sequence from clone RP23...    37   1.2
AF091565_1(AF091565|pid:none) Rattus norvegicus isolate QFG-TN1 ...    37   1.2
BC113135_1(BC113135|pid:none) Mus musculus olfactory receptor 15...    37   1.6
AB263571_1(AB263571|pid:none) Monodelphis domestica opor63 gene ...    37   2.1
protein update 2009. 7.16
PSORT 

 psg: 0.78  gvh: 0.46  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VHL279 is nuc
5' end seq. ID VHL279F
5' end seq. 
>VHL279F.Seq
ATTTTACAGATTAACAAGCACTTCACACCAAATCACCAATGATGACCATACAAAAGATAT
TCTCTTTAATTTATTCGGAAATGTAAATAGATGTGGTACTTTCGGTACATCAACATTAAG
TTATCAATCATGTATTTTAACAGTTGCTAATAAAGCGATCAATTATAAACTAGATTCAAG
ATATGCAACATCACCAAAATCAGTTATGGTAGGATCTCTCAGTCAACCAAGAACAATTAC
ATTTACAAATGATGTAATAACCATAATTTATAGTTCAACAACTGGTTTCACAGAATGCTC
ATCAAATGGTAACAAATATTCATCAAAGTATATTTTAATTTGTGATCCATTCACAGAATA
TTATGTAGATAAATTTACATTAGAATCACAATGTATTTATCAAATCAAAGTTTATACTAA
ATACGCATGTCCAACATTACGTTTATTCAAACAAACACAATATTATGATCTTTCGCCATT
GATGTTGGATTCAGCAAGAAATTATACAACAAGTCACTTTACAGACGGATCTGAGTTTTT
TATTGTATTCAATATTGGTAATAAAGCACAAATGTGTAGCGATGCATTAAATGATTATTA
TTTTTCTTGTCANNNNNNNNNN
Length of 5' end seq. 622
3' end seq. ID VHL279Z
3' end seq. 
>VHL279Z.Seq
NNNNNNNNNNATAACCAATATCACCATTTATCCATATATCGATAATATTGAAAAAGAAAC
AATATATTGTGAAATTGAAAAGTATTGTCCAAGTTCATCAAAAATTCCATCGATTCCAGA
ATCAGCAGTAGGTCATCCATGTATTGATTCAACAGTTTACTCTGAGAATTCTCAGTTTAT
AAGGTACAAATTTTATTCCAGCCTCGCTTGCAGATCAAATTAATAATCAATCATTAATTG
GTTCACCAAATTCAGTCACGTTTAATAATGTTTTATCTTCATCATGGAAATGGATTAACT
CAACACATGTAAAAGCCATCGTACAAAAAGGTATTGGAGCAATCCTTACAATTGTAAATG
TTGGAAGCCAAAGTACTGAAACGAGTCCATATCCCGTAATTTTTTATAAACAACCTGAAT
TAGATAATAAAAAATATGAAAACTTTGCAAATAGTAATATTTTAATAACTGGTTCTAATT
TTGTACCAGTTAGTGTTTCAGCAGGTTCATCAAGTTCTGTCAAAATCGGAGGTATTCCCT
GTAACTCTGTAACATGGGTAGATTCAAAATCTGTTATTTGTAATGTACTAATTGGAACTG
GTNATAATTTAAATATCCAAGTAACAGTGGAGGTCAACAAACCGAATTAAAGNATATTTC
TCANATTTAGGGCAAGGCGATTTCCTCTGTAGCGATTATCAAATTA
Length of 3' end seq. 706
Connected seq. ID VHL279P
Connected seq. 
>VHL279P.Seq
ATTTTACAGATTAACAAGCACTTCACACCAAATCACCAATGATGACCATACAAAAGATAT
TCTCTTTAATTTATTCGGAAATGTAAATAGATGTGGTACTTTCGGTACATCAACATTAAG
TTATCAATCATGTATTTTAACAGTTGCTAATAAAGCGATCAATTATAAACTAGATTCAAG
ATATGCAACATCACCAAAATCAGTTATGGTAGGATCTCTCAGTCAACCAAGAACAATTAC
ATTTACAAATGATGTAATAACCATAATTTATAGTTCAACAACTGGTTTCACAGAATGCTC
ATCAAATGGTAACAAATATTCATCAAAGTATATTTTAATTTGTGATCCATTCACAGAATA
TTATGTAGATAAATTTACATTAGAATCACAATGTATTTATCAAATCAAAGTTTATACTAA
ATACGCATGTCCAACATTACGTTTATTCAAACAAACACAATATTATGATCTTTCGCCATT
GATGTTGGATTCAGCAAGAAATTATACAACAAGTCACTTTACAGACGGATCTGAGTTTTT
TATTGTATTCAATATTGGTAATAAAGCACAAATGTGTAGCGATGCATTAAATGATTATTA
TTTTTCTTGTCA----------ATAACCAATATCACCATTTATCCATATATCGATAATAT
TGAAAAAGAAACAATATATTGTGAAATTGAAAAGTATTGTCCAAGTTCATCAAAAATTCC
ATCGATTCCAGAATCAGCAGTAGGTCATCCATGTATTGATTCAACAGTTTACTCTGAGAA
TTCTCAGTTTATAAGGTACAAATTTTATTCCAGCCTCGCTTGCAGATCAAATTAATAATC
AATCATTAATTGGTTCACCAAATTCAGTCACGTTTAATAATGTTTTATCTTCATCATGGA
AATGGATTAACTCAACACATGTAAAAGCCATCGTACAAAAAGGTATTGGAGCAATCCTTA
CAATTGTAAATGTTGGAAGCCAAAGTACTGAAACGAGTCCATATCCCGTAATTTTTTATA
AACAACCTGAATTAGATAATAAAAAATATGAAAACTTTGCAAATAGTAATATTTTAATAA
CTGGTTCTAATTTTGTACCAGTTAGTGTTTCAGCAGGTTCATCAAGTTCTGTCAAAATCG
GAGGTATTCCCTGTAACTCTGTAACATGGGTAGATTCAAAATCTGTTATTTGTAATGTAC
TAATTGGAACTGGTNATAATTTAAATATCCAAGTAACAGTGGAGGTCAACAAACCGAATT
AAAGNATATTTCTCANATTTAGGGCAAGGCGATTTCCTCTGTAGCGATTATCAAATTA
Length of connected seq. 1308
Full length Seq ID -
Full length Seq. -
Length of full length seq. -