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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHL276
Library VH
(Link to library)
Clone ID VHL276
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11201-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHL276 (VHL276Q) /CSM/VH/VHL2-D/VHL276Q.Seq.d/
ATAAATAATCTTTATCTTTAACTCTATATATATAAAAAATAATGGCCGATTTAAACTCTG
TTATTAGAATTAAACCATTTCATTTCATTCACGTATTAGATAATAATACAAATGTTACTA
GAGTTGAAGTTGGACCACAAACTTTTACAAGACAAGATCATGAAAAGTTAGTAAGTGGCC
CAGAACCAATGATTATGATCCCACAACGTAACTATTGTACAATTTCAAATCCAGTAGTTC
GTAATGAAAATGGTTCATTAGTATTGGATGAATATGGTCAAGTTAAATTAAGACATGGTG
ATGAAGAGATTCGTTTCTCACAAGAACCATTCCCATTATATCCAGGTGAAAAAATTTCAG
GTAAAGTTACCGCTCTCCAAGTTGTTGCACCATTAAAGGCTTTACGTCTTCGTGCTCTCC
GTGATTTCACTGAAGCTAAAGTCACTCATGTTGCTGGTGATGAATGGTTATTTGAAGGTC
CAGCAACCTATCTCCCACGTATTGATGTTAGAATTGAAGAAGAAATCAAAGCAACCATCA
TTGGACCAAATCAAGCACTCAAATTACGTGCCAACAAAGCATGTTCCGATCGTTCAGGTG
TTGCAAGAAAAGCTGGTGAAGAGTGGTTAGTTCGTCAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
k*slsltlyi*KIMADLNSVIRIKPFHFIHVLDNNTNVTRVEVGPQTFTRQDHEKLVSGP
EPMIMIPQRNYCTISNPVVRNENGSLVLDEYGQVKLRHGDEEIRFSQEPFPLYPGEKISG
KVTALQVVAPLKALRLRALRDFTEAKVTHVAGDEWLFEGPATYLPRIDVRIEEEIKATII
GPNQALKLRANKACSDRSGVARKAGEEWLVR---
Translated Amino Acid sequence (All Frames) 
Frame A:
innlyl*lyiykk*wpi*tlllelnhfisfty*iiiqmllelkldhkllqdkimks**va
qnq*l*shnvtivqfqiq*fvmkmvh*ywmnmvkln*dmvmkrfvshknhshyiqvkkfq
vklplskllhh*rlyvfvlsvislklkslmllvmngylkvqqpishvlmlelkkkskqps
ldqikhsnyvptkhvpivqvlqeklvksg*fv---


Frame B:
*iififnsiyiknngrfklcy*n*tisfhsrir**ykcy*s*swttnfyktrs*kvskwp
rtndydptt*llynfkssss**kwfisig*iwss*iktw**rdsfltrtipiisr*knfr
*syrspscctikgftsscsp*fh*s*shsccw**mvi*rssnlspty*c*n*rrnqsnhh
wtksstqitcqqsmfrsfrcckksw*rvvss---


Frame C:
k*slsltlyi*KIMADLNSVIRIKPFHFIHVLDNNTNVTRVEVGPQTFTRQDHEKLVSGP
EPMIMIPQRNYCTISNPVVRNENGSLVLDEYGQVKLRHGDEEIRFSQEPFPLYPGEKISG
KVTALQVVAPLKALRLRALRDFTEAKVTHVAGDEWLFEGPATYLPRIDVRIEEEIKATII
GPNQALKLRANKACSDRSGVARKAGEEWLVR---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL276 (VHL276Q) /CSM/VH/VHL2-D/VHL276Q.Seq.d/                       1263   0.0
VHB605 (VHB605Q) /CSM/VH/VHB6-A/VHB605Q.Seq.d/                       1263   0.0
VHP312 (VHP312Q) /CSM/VH/VHP3-A/VHP312Q.Seq.d/                       1249   0.0
VHQ344 (VHQ344Q) /CSM/VH/VHQ3-B/VHQ344Q.Seq.d/                       1235   0.0
AHE895 (AHE895Q) /CSM/AH/AHE8-D/AHE895Q.Seq.d/                       1233   0.0
VHK687 (VHK687Q) /CSM/VH/VHK6-D/VHK687Q.Seq.d/                       1223   0.0
VHO860 (VHO860Q) /CSM/VH/VHO8-C/VHO860Q.Seq.d/                       1221   0.0
SHD650 (SHD650Q) /CSM/SH/SHD6-C/SHD650Q.Seq.d/                       1221   0.0
AHM610 (AHM610Q) /CSM/AH/AHM6-A/AHM610Q.Seq.d/                       1221   0.0
VHN504 (VHN504Q) /CSM/VH/VHN5-A/VHN504Q.Seq.d/                       1217   0.0
own update 2003. 1. 2
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(L08646) Dictyostelium discoideum major vault protein alpha ...  1263   0.0    1
(BJ424859) Dictyostelium discoideum cDNA clone:ddv53g20, 5' ...  1263   0.0    1
(BJ418814) Dictyostelium discoideum cDNA clone:ddv34i02, 5' ...  1263   0.0    1
(BJ427042) Dictyostelium discoideum cDNA clone:ddv61h03, 5' ...  1249   0.0    1
(BJ427712) Dictyostelium discoideum cDNA clone:ddv63h11, 5' ...  1235   0.0    1
(BJ332819) Dictyostelium discoideum cDNA clone:dda40n24, 5' ...  1233   0.0    1
(BJ424585) Dictyostelium discoideum cDNA clone:ddv52m22, 5' ...  1223   0.0    1
(BJ426893) Dictyostelium discoideum cDNA clone:ddv60h16, 5' ...  1221   0.0    1
(BJ393491) Dictyostelium discoideum cDNA clone:dds31c14, 5' ...  1221   0.0    1
(BJ337032) Dictyostelium discoideum cDNA clone:dda56c04, 5' ...  1221   0.0    1
dna update 2008.11.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54659) RecName: Full=Major vault protein beta;          Short=...   244   2e-63
AJ720187_1(AJ720187|pid:none) Gallus gallus partial mRNA for hyp...   218   2e-55
AK167899_1(AK167899|pid:none) Mus musculus TIB-55 BB88 cDNA, RIK...   216   5e-55
AK152534_1(AK152534|pid:none) Mus musculus bone marrow macrophag...   216   5e-55
(Q62667) RecName: Full=Major vault protein;          Short=MVP; ...   216   5e-55
(Q9EQK5) RecName: Full=Major vault protein;          Short=MVP; ...   216   5e-55
AK088046_1(AK088046|pid:none) Mus musculus 2 days neonate thymus...   216   6e-55
BC049344_1(BC049344|pid:none) Danio rerio major vault protein, m...   215   1e-54
S57723(S57723)lrp protein - human                                     214   1e-54
(Q14764) RecName: Full=Major vault protein;          Short=MVP; ...   214   1e-54
protein update 2009. 7.16
PSORT 

 psg: 0.74  gvh: 0.30  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VHL276 is cyt
5' end seq. ID VHL276F
5' end seq. 
>VHL276F.Seq
ATAAATAATCTTTATCTTTAACTCTATATATATAAAAAATAATGGCCGATTTAAACTCTG
TTATTAGAATTAAACCATTTCATTTCATTCACGTATTAGATAATAATACAAATGTTACTA
GAGTTGAAGTTGGACCACAAACTTTTACAAGACAAGATCATGAAAAGTTAGTAAGTGGCC
CAGAACCAATGATTATGATCCCACAACGTAACTATTGTACAATTTCAAATCCAGTAGTTC
GTAATGAAAATGGTTCATTAGTATTGGATGAATATGGTCAAGTTAAATTAAGACATGGTG
ATGAAGAGATTCGTTTCTCACAAGAACCATTCCCATTATATCCAGGTGAAAAAATTTCAG
GTAAAGTTACCGCTCTCCAAGTTGTTGCACCATTAAAGGCTTTACGTCTTCGTGCTCTCC
GTGATTTCACTGAAGCTAAAGTCACTCATGTTGCTGGTGATGAATGGTTATTTGAAGGTC
CAGCAACCTATCTCCCACGTATTGATGTTAGAATTGAAGAAGAAATCAAAGCAACCATCA
TTGGACCAAATCAAGCACTCAAATTACGTGCCAACAAAGCATGTTCCGATCGTTCAGGTG
TTGCAAGAAAAGCTGGTGAAGAGTGGTTAGTTCGTCANNNNNNNNNN
Length of 5' end seq. 647
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -