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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHL265
Library VH
(Link to library)
Clone ID VHL265
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11082-1
Original site URL
Representative seq. ID VHL265P
(Link to Original site)
Representative DNA sequence 
>VHL265 (VHL265Q) /CSM/VH/VHL2-C/VHL265Q.Seq.d/
ATTGTTTTTTTTTATAAATTAATTATTTTTATCTATTTCTTTAAGACAAATTATATAAAT
CAATTATATAAATAGATAATATAAAGAAAAATAGGAATAATAAAATAAATAAAAAAATAA
AATAAAAAGATGTCAGCATTAACACAATCAGGATCAATAGAGAAACCATGTACAATTTTA
ATCAACTATGATAAAGGTGATCCACCACAAGTCAATGAATTCAAACAAAACTTCGAACAT
GGTACAACTGAACAAAAGATTGAAACATTAAAAAAGGTTATTCTCTATACAATCAATGGT
GAACCAATTCCACAATTACTTATGCCAATCATTCTTTATGTTATGCCATCAAATGATCAT
ACCATTAAAAAACTATTACTCATCTATTGGGAAGTAATTGAAAAAACTCATCTTGGTAAA
TTAAAATCCGAAATGATTTTAGTATGTAATTCATTATTAAATGATTTAAATCATCCAAAT
GAATTTGTACGTGGTAGTACATTAAGATTTTTATGTAAATTAAGAGAAGCAGAAGTTTTA
GAACCATTAGTCCCATCTGTTCGTTCAAACCTTGAGAATAGACATGCATATXXXXXXXXX
XCTGATCCAATTTACGTCGAAGCTTACGTTAGAGTTCATCAATATGATATCGTTTTGGAT
ATCTCTGTGTTCAATCAAACCAATGATACCCTTCAAAACGTTACATTGGAATTGGTCACT
TTGGGTGACTTGAAGATTTGCGAACGTGTCCCACCATTTACAATGGCTCCACGTGAAAAA
ACTTCAGCCAAAGCTTCAATCAAAGTCTCTTCAACTGATAATGGTGTAATTATGGGTACA
ATTGCTTTCGATATCGCTGGTTCCGTCAGTAGTATGTCTGATAAGAATTGTGTCATCCTT
AATGAACTTCATATTGATGTTATCGATTATATTCTTCCAGCTAATCATCAATACACTGAT
GTTCTTTTCAGAAATCATTGGCTCGAATTTGAATGGGAAAATAAAATACCAGTCAATACA
AATATTACCGATTTAGTTAAATACGTTCATCACATTAGTAAAGTCACCAACATGGGTATC
TTAACACCAGAAGTTCATCTTTCAAATGATACTGGTATCCTCTCTGCTAATCTTTGTGCT
AAAAGTGTTTTCGGTGAAGACGCACTTGCTAATATTTGTATNAAAAACAAGCTGAGGTAA
AATTTCGGTTATATTAGAATTAGAGCTAAAGTTCAATCAATGCGTACATTAGGNAAAAGA
TGGAATAGGGTANAAAGC
sequence update 2002.10.25
Translated Amino Acid sequence 
ivffykliifiyffktnyinqlyk*ii*rkigiik*ikk*NKKMSALTQSGSIEKPCTIL
INYDKGDPPQVNEFKQNFEHGTTEQKIETLKKVILYTINGEPIPQLLMPIILYVMPSNDH
TIKKLLLIYWEVIEKTHLGKLKSEMILVCNSLLNDLNHPNEFVRGSTLRFLCKLREAEVL
EPLVPSVRSNLENRHAY---

---DPIYVEAYVRVHQYDIVLDISVFNQTNDTLQNVTLELVTLGDLKICERVPPFTMAPR
EKTSAKASIKVSSTDNGVIMGTIAFDIAGSVSSMSDKNCVILNELHIDVIDYILPANHQY
TDVLFRNHWLEFEWENKIPVNTNITDLVKYVHHISKVTNMGILTPEVHLSNDTGILSANL
CAKSVFGEDALANICXKNKLR*nfgyirirakvqsmrtlgkrwnrvxs
Translated Amino Acid sequence (All Frames) 
Frame A:
ivffykliifiyffktnyinqlyk*ii*rkigiik*ikk*NKKMSALTQSGSIEKPCTIL
INYDKGDPPQVNEFKQNFEHGTTEQKIETLKKVILYTINGEPIPQLLMPIILYVMPSNDH
TIKKLLLIYWEVIEKTHLGKLKSEMILVCNSLLNDLNHPNEFVRGSTLRFLCKLREAEVL
EPLVPSVRSNLENRHAY---

---liqftskltlefinmisfwislcsikpmipfktlhwnwslwvt*rfanvshhlqwlh
vkklqpklqskslqlimv*lwvqllsislvpsvvclirivsslmnfilmlsiiffqliin
tlmffseiigsnlngkikyqsiqilpi*lntfitlvksptwvs*hqkfifqmilvsslli
fvlkvfsvkthllifvxkts*gkisvilelelkfnqcvh*xkdgigxk

Frame B:
lfffin*lflsislrqii*inyinr*ykek*e**nk*knkikrcqh*hnqdq*rnhvqf*
stmikvihhksmnsnktsnmvqlnkrlkh*krlfsiqsmvnqfhnylcqsffmlchqmii
plknyyssigk*lkklilvn*npk*f*yvihy*mi*iiqmnlyvvvh*dfyvn*ekqkf*
nh*shlfvqtlridmh---

---*snlrrslr*sssi*yrfgylcvqsnq*ypskryigighfg*ledlrtcptiyngst
*knfsqsfnqslfn**wcnygyncfryrwfrq*yv**elchp**tsy*cyrlysss*ssi
h*csfqkslari*mgk*ntsqykyyrfs*irssh**shqhgylntrsssfk*ywyplc*s
lc*kcfr*rrtc*ylyxkqaevkfrly*n*s*ssinayirxkme*gxk

Frame C:
cffl*inyfylfl*dklyksii*idnikknrnnkinkkik*kdvsintirinretmynfn
ql**r*sttsq*iqtklrtwyn*tkd*nikkgyslynqw*tnstityanhslcyaik*sy
h*ktithllgsn*knssw*ikirndfsm*fiik*fkssk*ictw*yikifm*ikrsrsfr
tispicsfkp*e*tci---

---DPIYVEAYVRVHQYDIVLDISVFNQTNDTLQNVTLELVTLGDLKICERVPPFTMAPR
EKTSAKASIKVSSTDNGVIMGTIAFDIAGSVSSMSDKNCVILNELHIDVIDYILPANHQY
TDVLFRNHWLEFEWENKIPVNTNITDLVKYVHHISKVTNMGILTPEVHLSNDTGILSANL
CAKSVFGEDALANICXKNKLR*nfgyirirakvqsmrtlgkrwnrvxs
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL265 (VHL265Q) /CSM/VH/VHL2-C/VHL265Q.Seq.d/                       2202   0.0
VHM440 (VHM440Q) /CSM/VH/VHM4-B/VHM440Q.Seq.d/                       1296   0.0
VHM178 (VHM178Q) /CSM/VH/VHM1-D/VHM178Q.Seq.d/                       1245   0.0
AHA639 (AHA639Q) /CSM/AH/AHA6-B/AHA639Q.Seq.d/                       1235   0.0
VHP390 (VHP390Q) /CSM/VH/VHP3-D/VHP390Q.Seq.d/                       1221   0.0
VHO864 (VHO864Q) /CSM/VH/VHO8-C/VHO864Q.Seq.d/                       1221   0.0
VHC701 (VHC701Q) /CSM/VH/VHC7-A/VHC701Q.Seq.d/                       1221   0.0
VHB891 (VHB891Q) /CSM/VH/VHB8-D/VHB891Q.Seq.d/                       1221   0.0
VHA685 (VHA685Q) /CSM/VH/VHA6-D/VHA685Q.Seq.d/                       1221   0.0
SHF684 (SHF684Q) /CSM/SH/SHF6-D/SHF684Q.Seq.d/                       1221   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ443608) Dictyostelium discoideum cDNA clone:ddv53a18, 3' ...  1324   0.0    1
(BJ444164) Dictyostelium discoideum cDNA clone:ddv55p10, 3' ...  1296   0.0    1
(U62960) Dictyostelium discoideum CopB (copB) mRNA, partial ...  1150   0.0    2
(AF247143) Dictyostelium discoideum beta-COP protein mRNA, c...  1150   0.0    2
(BJ446142) Dictyostelium discoideum cDNA clone:ddv61d23, 3' ...  1150   0.0    2
(BJ445812) Dictyostelium discoideum cDNA clone:ddv60p16, 3' ...  1150   0.0    2
(BJ444288) Dictyostelium discoideum cDNA clone:ddv55k19, 3' ...  1150   0.0    2
(BJ437982) Dictyostelium discoideum cDNA clone:ddv36b01, 3' ...  1150   0.0    2
(BJ437617) Dictyostelium discoideum cDNA clone:ddv34f24, 3' ...  1150   0.0    2
(BJ436994) Dictyostelium discoideum cDNA clone:ddv32i22, 3' ...  1150   0.0    2
dna update 2008.11.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U62960_1(U62960|pid:none) Dictyostelium discoideum CopB (copB) m...   404   e-111
(Q23924) RecName: Full=Coatomer subunit beta; AltName: Full=Beta...   404   e-111
(P23514) RecName: Full=Coatomer subunit beta; AltName: Full=Beta...   244   6e-63
BT045694_1(BT045694|pid:none) Salmo salar clone ssal-rgf-528-379...   243   8e-63
(Q9JIF7) RecName: Full=Coatomer subunit beta; AltName: Full=Beta...   243   1e-62
BC081657_1(BC081657|pid:none) Danio rerio coatomer protein compl...   242   2e-62
(Q5R922) RecName: Full=Coatomer subunit beta; AltName: Full=Beta...   241   4e-62
AY294010_1(AY294010|pid:none) Danio rerio coatomer protein compl...   241   4e-62
BC073438_1(BC073438|pid:none) Xenopus laevis MGC80934 protein, m...   241   5e-62
BC168594_1(BC168594|pid:none) Xenopus tropicalis cDNA clone MGC:...   240   7e-62
protein update 2009. 7.16
PSORT 

 psg: 0.83  gvh: 0.33  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VHL265 is cyt
5' end seq. ID VHL265F
5' end seq. 
>VHL265F.Seq
ATTGTTTTTTTTTATAAATTAATTATTTTTATCTATTTCTTTAAGACAAATTATATAAAT
CAATTATATAAATAGATAATATAAAGAAAAATAGGAATAATAAAATAAATAAAAAAATAA
AATAAAAAGATGTCAGCATTAACACAATCAGGATCAATAGAGAAACCATGTACAATTTTA
ATCAACTATGATAAAGGTGATCCACCACAAGTCAATGAATTCAAACAAAACTTCGAACAT
GGTACAACTGAACAAAAGATTGAAACATTAAAAAAGGTTATTCTCTATACAATCAATGGT
GAACCAATTCCACAATTACTTATGCCAATCATTCTTTATGTTATGCCATCAAATGATCAT
ACCATTAAAAAACTATTACTCATCTATTGGGAAGTAATTGAAAAAACTCATCTTGGTAAA
TTAAAATCCGAAATGATTTTAGTATGTAATTCATTATTAAATGATTTAAATCATCCAAAT
GAATTTGTACGTGGTAGTACATTAAGATTTTTATGTAAATTAAGAGAAGCAGAAGTTTTA
GAACCATTAGTCCCATCTGTTCGTTCAAACCTTGAGAATAGACATGCATATNNNNNNNNN
N
Length of 5' end seq. 601
3' end seq. ID VHL265Z
3' end seq. 
>VHL265Z.Seq
NNNNNNNNNNCTGATCCAATTTACGTCGAAGCTTACGTTAGAGTTCATCAATATGATATC
GTTTTGGATATCTCTGTGTTCAATCAAACCAATGATACCCTTCAAAACGTTACATTGGAA
TTGGTCACTTTGGGTGACTTGAAGATTTGCGAACGTGTCCCACCATTTACAATGGCTCCA
CGTGAAAAAACTTCAGCCAAAGCTTCAATCAAAGTCTCTTCAACTGATAATGGTGTAATT
ATGGGTACAATTGCTTTCGATATCGCTGGTTCCGTCAGTAGTATGTCTGATAAGAATTGT
GTCATCCTTAATGAACTTCATATTGATGTTATCGATTATATTCTTCCAGCTAATCATCAA
TACACTGATGTTCTTTTCAGAAATCATTGGCTCGAATTTGAATGGGAAAATAAAATACCA
GTCAATACAAATATTACCGATTTAGTTAAATACGTTCATCACATTAGTAAAGTCACCAAC
ATGGGTATCTTAACACCAGAAGTTCATCTTTCAAATGATACTGGTATCCTCTCTGCTAAT
CTTTGTGCTAAAAGTGTTTTCGGTGAAGACGCACTTGCTAATATTTGTATNAAAAACAAG
CTGAGGTAAAATTTCGGTTATATTAGAATTAGAGCTAAAGTTCAATCAATGCGTACATTA
GGNAAAAGATGGAATAGGGTANAAAGC
Length of 3' end seq. 687
Connected seq. ID VHL265P
Connected seq. 
>VHL265P.Seq
ATTGTTTTTTTTTATAAATTAATTATTTTTATCTATTTCTTTAAGACAAATTATATAAAT
CAATTATATAAATAGATAATATAAAGAAAAATAGGAATAATAAAATAAATAAAAAAATAA
AATAAAAAGATGTCAGCATTAACACAATCAGGATCAATAGAGAAACCATGTACAATTTTA
ATCAACTATGATAAAGGTGATCCACCACAAGTCAATGAATTCAAACAAAACTTCGAACAT
GGTACAACTGAACAAAAGATTGAAACATTAAAAAAGGTTATTCTCTATACAATCAATGGT
GAACCAATTCCACAATTACTTATGCCAATCATTCTTTATGTTATGCCATCAAATGATCAT
ACCATTAAAAAACTATTACTCATCTATTGGGAAGTAATTGAAAAAACTCATCTTGGTAAA
TTAAAATCCGAAATGATTTTAGTATGTAATTCATTATTAAATGATTTAAATCATCCAAAT
GAATTTGTACGTGGTAGTACATTAAGATTTTTATGTAAATTAAGAGAAGCAGAAGTTTTA
GAACCATTAGTCCCATCTGTTCGTTCAAACCTTGAGAATAGACATGCATAT---------
-CTGATCCAATTTACGTCGAAGCTTACGTTAGAGTTCATCAATATGATATCGTTTTGGAT
ATCTCTGTGTTCAATCAAACCAATGATACCCTTCAAAACGTTACATTGGAATTGGTCACT
TTGGGTGACTTGAAGATTTGCGAACGTGTCCCACCATTTACAATGGCTCCACGTGAAAAA
ACTTCAGCCAAAGCTTCAATCAAAGTCTCTTCAACTGATAATGGTGTAATTATGGGTACA
ATTGCTTTCGATATCGCTGGTTCCGTCAGTAGTATGTCTGATAAGAATTGTGTCATCCTT
AATGAACTTCATATTGATGTTATCGATTATATTCTTCCAGCTAATCATCAATACACTGAT
GTTCTTTTCAGAAATCATTGGCTCGAATTTGAATGGGAAAATAAAATACCAGTCAATACA
AATATTACCGATTTAGTTAAATACGTTCATCACATTAGTAAAGTCACCAACATGGGTATC
TTAACACCAGAAGTTCATCTTTCAAATGATACTGGTATCCTCTCTGCTAATCTTTGTGCT
AAAAGTGTTTTCGGTGAAGACGCACTTGCTAATATTTGTATNAAAAACAAGCTGAGGTAA
AATTTCGGTTATATTAGAATTAGAGCTAAAGTTCAATCAATGCGTACATTAGGNAAAAGA
TGGAATAGGGTANAAAGC
Length of connected seq. 1268
Full length Seq ID -
Full length Seq. -
Length of full length seq. -