>VHL243 (VHL243Q) /CSM/VH/VHL2-B/VHL243Q.Seq.d/
CACTGTTGGCCTACTGATTTATATTATTTTTACTTCACTATCTGTTTATATAAACAAATT
GGAGGAAATTATAAAATGAAGATTTCATCTATTTTATTTATTTTTATAGCGATTATTGTT
GGCTTAGCACTTTCACAAAATACTATTCCAACTTATAAGCAAAACAGCATTAATTGGAAG
CAATTTCAACCATTATATACAAATAAAGATGATTATGTATTAATTGTAGATACAAGATCA
AAGAATGTTTTAAAAAGATCAACAAATGGTGGTATTGATTGGTCATCAAATGTACTTGAT
AAACAAGGAAATATTATTTATGGTAATGCAGGATATTATCAAAGAGATGATAATATTATG
GTTGTAAATTTCCCATCTTATGGAAAAACCCAAATTTCAGTATCAAATGATGCAGGTCAA
ACATTTTCAACCTCAGCAGTTTTTCCACATAAAGTTGTATCAGTTTCACCACATTTAGAT
ATTGAGGGTTTAGTGATTGCACGTTCCGATAATTTCATTTCAATTAGTGAAGATTXXXXX
XXXXX

HCWPTDLYYFYFTICLYKQIGGNYKMKISSILFIFIAIIVGLALSQNTIPTYKQNSINWK
QFQPLYTNKDDYVLIVDTRSKNVLKRSTNGGIDWSSNVLDKQGNIIYGNAGYYQRDDNIM
VVNFPSYGKTQISVSNDAGQTFSTSAVFPHKVVSVSPHLDIEGLVIARSDNFISISED--
-

Frame A:
HCWPTDLYYFYFTICLYKQIGGNYKMKISSILFIFIAIIVGLALSQNTIPTYKQNSINWK
QFQPLYTNKDDYVLIVDTRSKNVLKRSTNGGIDWSSNVLDKQGNIIYGNAGYYQRDDNIM
VVNFPSYGKTQISVSNDAGQTFSTSAVFPHKVVSVSPHLDIEGLVIARSDNFISISED--
-


Frame B:
tvglliyiiftslsvyinkleeiik*rfhlfylfl*rllla*hfhkilfqlisktaligs
nfnhyiqikmimy*l*iqdqrmf*kdqqmvvlighqmylinkeilfmvmqdiikemiilw
l*ishlmekpkfqyqmmqvkhfqpqqffhiklyqfhhi*ilrv**lhvpiisfqlvk---


Frame C:
llay*filfllhylfi*tnwrkl*nedfiyfiyfysdycwlstftkyysnl*akqh*lea
istiiyk*r*lcincrykikecfkkinkwwy*lvikct**trkyylw*crilskr**yyg
ckfpilwknpnfsik*crsnifnlssfst*scisfttfry*gfsdctfr*fhfn**r---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL243 (VHL243Q) /CSM/VH/VHL2-B/VHL243Q.Seq.d/                       1061   0.0
VHP571 (VHP571Q) /CSM/VH/VHP5-C/VHP571Q.Seq.d/                       1005   0.0
VHM665 (VHM665Q) /CSM/VH/VHM6-C/VHM665Q.Seq.d/                       1005   0.0
VHL701 (VHL701Q) /CSM/VH/VHL7-A/VHL701Q.Seq.d/                       1005   0.0
VHL696 (VHL696Q) /CSM/VH/VHL6-D/VHL696Q.Seq.d/                       1005   0.0
VHJ415 (VHJ415Q) /CSM/VH/VHJ4-A/VHJ415Q.Seq.d/                       1005   0.0
VHJ213 (VHJ213Q) /CSM/VH/VHJ2-A/VHJ213Q.Seq.d/                       1005   0.0
VHI842 (VHI842Q) /CSM/VH/VHI8-B/VHI842Q.Seq.d/                       1005   0.0
VHI306 (VHI306Q) /CSM/VH/VHI3-A/VHI306Q.Seq.d/                       1005   0.0
VHI129 (VHI129Q) /CSM/VH/VHI1-B/VHI129Q.Seq.d/                       1005   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ424708) Dictyostelium discoideum cDNA clone:ddv53e12, 5' ...  1061   0.0    1
(BJ420673) Dictyostelium discoideum cDNA clone:ddv40g01, 5' ...   991   0.0    2
(BJ422822) Dictyostelium discoideum cDNA clone:ddv47l01, 5' ...   991   0.0    2
(BJ418854) Dictyostelium discoideum cDNA clone:ddv34b08, 5' ...   991   0.0    2
(BJ420746) Dictyostelium discoideum cDNA clone:ddv40e12, 5' ...   991   0.0    2
(BJ422884) Dictyostelium discoideum cDNA clone:ddv47i07, 5' ...   991   0.0    2
(BJ420221) Dictyostelium discoideum cDNA clone:ddv38i18, 5' ...   991   0.0    2
(BJ419748) Dictyostelium discoideum cDNA clone:ddv37g04, 5' ...   991   0.0    2
(BJ418249) Dictyostelium discoideum cDNA clone:ddv32k03, 5' ...   991   0.0    2
(BJ424905) Dictyostelium discoideum cDNA clone:ddv54b01, 5' ...   991   0.0    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU719193_1(EU719193|pid:none) Aspergillus niger strain CBS 120.4...    35   1.7
CU466930_788(CU466930|pid:none) Candidatus Cloacamonas acidamino...    34   2.8
CP000447_3980(CP000447|pid:none) Shewanella frigidimarina NCIMB ...    33   4.8
AF191043_1(AF191043|pid:none) Porcine lymphotropic herpesvirus 2...    33   6.3
(Q8TS91) RecName: Full=Imidazole glycerol phosphate synthase sub...    33   6.3
CP000091_2152(CP000091|pid:none) Ralstonia eutropha JMP134 chrom...    33   6.3
AY170314_6(AY170314|pid:none) Porcine lymphotropic herpesvirus 2...    33   6.3
(Q25802) RecName: Full=DNA-directed RNA polymerase subunit beta'...    32   8.2
CR940348_871(CR940348|pid:none) Theileria annulata strain Ankara...    32   8.2
AM435157_2(AM435157|pid:none) Vitis vinifera contig VV78X114140....    32   8.2

 psg: 0.75  gvh: 0.69  alm: 0.15  top: 0.47  tms: 0.07  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.89  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	 20.0 %: endoplasmic reticulum
	 16.0 %: Golgi
	 12.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for VHL243 is cyt

>VHL243F.Seq
CACTGTTGGCCTACTGATTTATATTATTTTTACTTCACTATCTGTTTATATAAACAAATT
GGAGGAAATTATAAAATGAAGATTTCATCTATTTTATTTATTTTTATAGCGATTATTGTT
GGCTTAGCACTTTCACAAAATACTATTCCAACTTATAAGCAAAACAGCATTAATTGGAAG
CAATTTCAACCATTATATACAAATAAAGATGATTATGTATTAATTGTAGATACAAGATCA
AAGAATGTTTTAAAAAGATCAACAAATGGTGGTATTGATTGGTCATCAAATGTACTTGAT
AAACAAGGAAATATTATTTATGGTAATGCAGGATATTATCAAAGAGATGATAATATTATG
GTTGTAAATTTCCCATCTTATGGAAAAACCCAAATTTCAGTATCAAATGATGCAGGTCAA
ACATTTTCAACCTCAGCAGTTTTTCCACATAAAGTTGTATCAGTTTCACCACATTTAGAT
ATTGAGGGTTTAGTGATTGCACGTTCCGATAATTTCATTTCAATTAGTGAAGATTNNNNN
NNNNN