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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHL212
Library VH
(Link to library)
Clone ID VHL212
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16579-1
Original site URL
Representative seq. ID VHL212P
(Link to Original site)
Representative DNA sequence 
>VHL212 (VHL212Q) /CSM/VH/VHL2-A/VHL212Q.Seq.d/
AAATTAAATTGCACATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTGGTAAG
CAGAACTGGCGATGTGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCACTAATA
GATACCACAAAAGGTGTTAGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGTCGGTAT
CCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGATGACG
CTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGTGTAG
GAAGGCGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTTTAGTGC
AGATCTTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTTGAAGGCCGAAGTGGGGAA
GGGTTCCATAACAATGGAATTCACTTATGGGTGAGTCGATCCTAAGGTTTGGGTTAACTC
TCTCTAATAAGGTTACTAGGTCATTGGATCGAAAGTGAAGGTGGCTTTAACACTAGTGAC
TTTATAGGCCGAAAGGGAAGCGGGTTAAAATTCCTGCACCATCGAATGGGATATTAGGGT
AACCGATCGTAATCCXXXXXXXXXXTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTG
GCTTGTGGCAGCCAAGCGCTCATAGCGACGCTGCTTTTTGATCCTTCGATGTCGGCTCTT
CTTATCATTGTGAAGCAGAATTCACAAAGTGTTGGATTGTTCACCCACTAACAAGGAACG
TGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGTTGTCAATTGTTT
GCGTAATAGTAGCATGATTTAGTACGAGAGGAACTGTCATGCCGGATCACTGGTCTGTAG
GTTTATTTGACAAAATAGTGACCTGCCGCTACCATCCGTTGGATAATGGCTGAACGCCTC
TAAGTCAGAATCCATTCTAGAAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGT
AACATTAGGTTGTTGGTGGGGGACCACTTTCAACTTTAAACCATATGATTAATCGCTGTT
ACACTGCAGTTTCCTTCCGGTTATTGTGGTGGGTGGCTAAATTCTAATTTATATCCTCGT
TCCGCTCAACTCTTCGATTGTAGACGACTATCAAANAACTAGGTGCTGTAAGCTTCCGAG
TAGCGTTCAGTTACGAGGGGTNAGGCTTTTCCAT
sequence update 2002.10.25
Translated Amino Acid sequence 
n*iahvq*kigalsgpflvsrtgdvg*tkywdktsnih**ipqkvlvh*dsrtvamevgi
r*gvcnnspakwtspeng*r*qwmvdaqslkeviilltcrka*r*rrslnvnssgvvfsa
dldgsskyskeftlkaevgkgsitmeftyg*vdpkvwvnsl**gy*vigskvkvaltlvt
l*aereag*NSCTIEWDIRVTDRN---

---RGVRKVTTGITGLWQPSAHSDAAF*sfdvgssyhceaeftkcwivhpltrnvswv*t
vvrqvsftlllsivcviva*fstrgtvmpdhwsvglfdkivtcryhpldng*tplsqnpf
*krkpnalececcr*h*vvgggplstlnhminrcytavsfrllwwvakf*fissfrstlr
l*ttikxlgavsfrvafsyegxgfs
Translated Amino Acid sequence (All Frames) 
Frame A:
klnctcamknrss*waifgkqnwrcglnqilg*dv*hslidttkgvsslrqqdgghgsry
plrsv*qltcqmd*p*kwmtlavdgrcpivkrsdntfnv*egvkvt*klecefewscl*c
rs*w**qifkriyfegrsgegfhnngihlwvsrs*glg*lslirllghwieseggfntsd
figrkgsglkflhhrmgy*gnrs*s---

---*rcqksyhrdnwlvaakrs*rrcflilrcrlflsl*srihkvldcsptnkerelgld
rretg*fyptvvnclrnssmi*yernchagslvcrfi*qnsdlplpsvg*wlnasksesi
letqtkcfrv*ml*vtlgcwwgttfnfkpyd*sllhcsflpvivvgg*iliyilvplnss
ivddyqxtrccklpssvqlrgvrlfh

Frame B:
n*iahvq*kigalsgpflvsrtgdvg*tkywdktsnih**ipqkvlvh*dsrtvamevgi
r*gvcnnspakwtspeng*r*qwmvdaqslkeviilltcrka*r*rrslnvnssgvvfsa
dldgsskyskeftlkaevgkgsitmeftyg*vdpkvwvnsl**gy*vigskvkvaltlvt
l*aereag*NSCTIEWDIRVTDRN---

---RGVRKVTTGITGLWQPSAHSDAAF*sfdvgssyhceaeftkcwivhpltrnvswv*t
vvrqvsftlllsivcviva*fstrgtvmpdhwsvglfdkivtcryhpldng*tplsqnpf
*krkpnalececcr*h*vvgggplstlnhminrcytavsfrllwwvakf*fissfrstlr
l*ttikxlgavsfrvafsyegxgfs

Frame C:
iklhmcnek*ellvghfw*aelamwvepnigirrltftnryhkrc*fiktagrwpwksvs
akecvtthlpnglalkmddassgwsmpnr*kk**yf*rvgrregnvea*m*irvelslvq
ilmvvaniqknll*rpkwgrvp*qwnslmgesilrfgltlsnkvtrsldrk*rwl*h**l
yrpkgkrvkipapsngilg*pivi---

---evseklpqg*lacgsqaliatllfdpsmsalliivkqnsqsvglfth*qgt*agfrp
s*drlvlpyccqlfa***hdlvreelscritgl*vyltk**paatirwimaerl*vrihs
rnanqml*svnvvgnirllvgdhfql*ti*liavtlqfpsgycggwlnsnlyprsaqlfd
crrlsxn*vl*ase*rsvtrgxafp
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL212 (VHL212Q) /CSM/VH/VHL2-A/VHL212Q.Seq.d/                       2375   0.0
VHG394 (VHG394Q) /CSM/VH/VHG3-D/VHG394Q.Seq.d/                       1219   0.0
SHE483 (SHE483Q) /CSM/SH/SHE4-D/SHE483Q.Seq.d/                       1219   0.0
AHF338 (AHF338Q) /CSM/AH/AHF3-B/AHF338Q.Seq.d/                       1215   0.0
VHP355 (VHP355Q) /CSM/VH/VHP3-C/VHP355Q.Seq.d/                       1209   0.0
VHM465 (VHM465Q) /CSM/VH/VHM4-C/VHM465Q.Seq.d/                       1205   0.0
VHN205 (VHN205Q) /CSM/VH/VHN2-A/VHN205Q.Seq.d/                       1197   0.0
VHN816 (VHN816Q) /CSM/VH/VHN8-A/VHN816Q.Seq.d/                       1191   0.0
VHM596 (VHM596Q) /CSM/VH/VHM5-D/VHM596Q.Seq.d/                       1191   0.0
VHL615 (VHL615Q) /CSM/VH/VHL6-A/VHL615Q.Seq.d/                       1191   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AY171066) Dictyostelium discoideum extrachromosomal palindr...  1219   0.0    1
(BJ424635) Dictyostelium discoideum cDNA clone:ddv53g04, 5' ...  1219   0.0    1
(BJ421809) Dictyostelium discoideum cDNA clone:ddv43l23, 5' ...  1219   0.0    1
(BJ393837) Dictyostelium discoideum cDNA clone:dds32f22, 5' ...  1219   0.0    1
(BJ333084) Dictyostelium discoideum cDNA clone:dda41l09, 5' ...  1215   0.0    1
(X00601) Dictyostelium discoideum ribosomal RNA gene.            1211   0.0    1
(BJ427212) Dictyostelium discoideum cDNA clone:ddv61n13, 5' ...  1209   0.0    1
(BJ425368) Dictyostelium discoideum cDNA clone:ddv55b18, 5' ...  1205   0.0    1
(BJ443489) Dictyostelium discoideum cDNA clone:ddv53g04, 3' ...  1195   0.0    1
(BJ426199) Dictyostelium discoideum cDNA clone:ddv58p04, 5' ...  1191   0.0    1
dna update 2008.11.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU430725_1(EU430725|pid:none) Cupressus sempervirens clone CYPLP...   130   1e-28
CP000497_644(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    60   9e-14
AY436773_1(AY436773|pid:none) Pyrus communis putative senescence...    75   4e-12
CP001575_406(CP001575|pid:none) Micromonas sp. RCC299 chromosome...    74   1e-11
AK230153_1(AK230153|pid:none) Arabidopsis thaliana mRNA for hypo...    68   8e-10
EU244380_1(EU244380|pid:none) Haliotis diversicolor clone HDr4CJ...    68   8e-10
BC114377_1(BC114377|pid:none) Homo sapiens cDNA clone MGC:134704...    65   6e-09
U12823_1(U12823|pid:none) Acanthamoeba polyphaga CDC:0187:1 hemo...    45   3e-05
EF192058_1(EF192058|pid:none) Trichosanthes dioica clone TDM04 p...    52   6e-05
AL844507_287(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    45   0.004
protein update 2009. 7.16
PSORT 

 psg: 0.75  gvh: 0.45  alm: 0.60  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for VHL212 is cyt
5' end seq. ID VHL212F
5' end seq. 
>VHL212F.Seq
AAATTAAATTGCACATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTGGTAAG
CAGAACTGGCGATGTGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCACTAATA
GATACCACAAAAGGTGTTAGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGTCGGTAT
CCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGATGACG
CTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGTGTAG
GAAGGCGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTTTAGTGC
AGATCTTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTTGAAGGCCGAAGTGGGGAA
GGGTTCCATAACAATGGAATTCACTTATGGGTGAGTCGATCCTAAGGTTTGGGTTAACTC
TCTCTAATAAGGTTACTAGGTCATTGGATCGAAAGTGAAGGTGGCTTTAACACTAGTGAC
TTTATAGGCCGAAAGGGAAGCGGGTTAAAATTCCTGCACCATCGAATGGGATATTAGGGT
AACCGATCGTAATCCNNNNNNNNNN
Length of 5' end seq. 625
3' end seq. ID VHL212Z
3' end seq. 
>VHL212Z.Seq
NNNNNNNNNNTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAA
GCGCTCATAGCGACGCTGCTTTTTGATCCTTCGATGTCGGCTCTTCTTATCATTGTGAAG
CAGAATTCACAAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTTAGA
CCGTCGTGAGACAGGTTAGTTTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTAGCAT
GATTTAGTACGAGAGGAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGACAAAA
TAGTGACCTGCCGCTACCATCCGTTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCAT
TCTAGAAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTG
GTGGGGGACCACTTTCAACTTTAAACCATATGATTAATCGCTGTTACACTGCAGTTTCCT
TCCGGTTATTGTGGTGGGTGGCTAAATTCTAATTTATATCCTCGTTCCGCTCAACTCTTC
GATTGTAGACGACTATCAAANAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACG
AGGGGTNAGGCTTTTCCAT
Length of 3' end seq. 619
Connected seq. ID VHL212P
Connected seq. 
>VHL212P.Seq
AAATTAAATTGCACATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTGGTAAG
CAGAACTGGCGATGTGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCACTAATA
GATACCACAAAAGGTGTTAGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGTCGGTAT
CCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGATGACG
CTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGTGTAG
GAAGGCGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTTTAGTGC
AGATCTTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTTGAAGGCCGAAGTGGGGAA
GGGTTCCATAACAATGGAATTCACTTATGGGTGAGTCGATCCTAAGGTTTGGGTTAACTC
TCTCTAATAAGGTTACTAGGTCATTGGATCGAAAGTGAAGGTGGCTTTAACACTAGTGAC
TTTATAGGCCGAAAGGGAAGCGGGTTAAAATTCCTGCACCATCGAATGGGATATTAGGGT
AACCGATCGTAATCC----------TAGAGGTGTCAGAAAAGTTACCACAGGGATAACTG
GCTTGTGGCAGCCAAGCGCTCATAGCGACGCTGCTTTTTGATCCTTCGATGTCGGCTCTT
CTTATCATTGTGAAGCAGAATTCACAAAGTGTTGGATTGTTCACCCACTAACAAGGAACG
TGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGTTGTCAATTGTTT
GCGTAATAGTAGCATGATTTAGTACGAGAGGAACTGTCATGCCGGATCACTGGTCTGTAG
GTTTATTTGACAAAATAGTGACCTGCCGCTACCATCCGTTGGATAATGGCTGAACGCCTC
TAAGTCAGAATCCATTCTAGAAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGT
AACATTAGGTTGTTGGTGGGGGACCACTTTCAACTTTAAACCATATGATTAATCGCTGTT
ACACTGCAGTTTCCTTCCGGTTATTGTGGTGGGTGGCTAAATTCTAATTTATATCCTCGT
TCCGCTCAACTCTTCGATTGTAGACGACTATCAAANAACTAGGTGCTGTAAGCTTCCGAG
TAGCGTTCAGTTACGAGGGGTNAGGCTTTTCCAT
Length of connected seq. 1224
Full length Seq ID -
Full length Seq. -
Length of full length seq. -