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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHL204
Library VH
(Link to library)
Clone ID VHL204
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16579-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHL204 (VHL204Q) /CSM/VH/VHL2-A/VHL204Q.Seq.d/
GTATTCTAGTTCCATCTTGTAAAGACAATGATTAGCAGTTTCGGGGGCGTAATGCTCTCA
GCTGATTCTCAAACTCTGAACGGGTGGGTATCATTTTAATTCACTTAATTGGATTTTAAA
ATTAAATTGCACATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTGGTAAGCA
GAACTGGCGATGTGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCACTAATAGA
TACCACAAAAGGTGTTAGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGTCGGTATCC
GCTAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGATGACGCT
AGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGTGTAGGA
AGGCGTGAAGGTAACGTANAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTTTAGTGCAG
ATCTTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTTGAAGGCCGAAGTGGGGAAGG
GTTCCATAACAATGGAATTCACTTATGGGTGAGTXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
ilvpsckdnd*qfrgrnals*fsnservgiilihligf*n*iahvq*kigalsgpflvsr
tgdvg*tkywdktsnih**ipqkvlvh*dsrtvamevgir*gvcnnspakwtspeng*r*
qwmvdaqslkeviilltcrka*r*RXSLNVNSSGVVFSADLDGSSKYSKEFTLKAEVGKG
SITMEFTYG*---
Translated Amino Acid sequence (All Frames) 
Frame A:
vf*fhlvktmissfggvmlsadsqtlngwvsf*ft*ldfkiklhmcnek*ellvghfw*a
elamwvepnigirrltftnryhkrc*fiktagrwpwksvsakecvtthlpnglalkmdda
ssgwsmpnr*kk**yf*rvgrregnvxa*m*irvelslvqilmvvaniqknll*rpkwgr
vp*qwnslmge---


Frame B:
ysssil*rq*lavsga*csqlilkl*tggyhfnslnwilklnctcamknrss*waifgkq
nwrcglnqilg*dv*hslidttkgvsslrqqdgghgsryplrsv*qltcqmd*p*kwmtl
avdgrcpivkrsdntfnv*egvkvtxklecefewscl*crs*w**qifkriyfegrsgeg
fhnngihlwv---


Frame C:
ilvpsckdnd*qfrgrnals*fsnservgiilihligf*n*iahvq*kigalsgpflvsr
tgdvg*tkywdktsnih**ipqkvlvh*dsrtvamevgir*gvcnnspakwtspeng*r*
qwmvdaqslkeviilltcrka*r*RXSLNVNSSGVVFSADLDGSSKYSKEFTLKAEVGKG
SITMEFTYG*---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL862 (VHL862Q) /CSM/VH/VHL8-C/VHL862Q.Seq.d/                       1132   0.0
VHL204 (VHL204Q) /CSM/VH/VHL2-A/VHL204Q.Seq.d/                       1132   0.0
VHK875 (VHK875Q) /CSM/VH/VHK8-D/VHK875Q.Seq.d/                       1132   0.0
VHC820 (VHC820Q) /CSM/VH/VHC8-A/VHC820Q.Seq.d/                       1118   0.0
VHB850 (VHB850Q) /CSM/VH/VHB8-C/VHB850Q.Seq.d/                       1118   0.0
VHD219 (VHD219Q) /CSM/VH/VHD2-A/VHD219Q.Seq.d/                       1055   0.0
VHK263 (VHK263Q) /CSM/VH/VHK2-C/VHK263Q.Seq.d/                       1037   0.0
SHG223 (SHG223Q) /CSM/SH/SHG2-A/SHG223Q.Seq.d/                       1037   0.0
SHA880 (SHA880Q) /CSM/SH/SHA8-D/SHA880Q.Seq.d/                       1037   0.0
VHG320 (VHG320Q) /CSM/VH/VHG3-A/VHG320Q.Seq.d/                       1035   0.0
own update 2003. 1. 2
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AY171066) Dictyostelium discoideum extrachromosomal palindr...  1132   0.0    1
(BJ425105) Dictyostelium discoideum cDNA clone:ddv54l16, 5' ...  1132   0.0    1
(BJ424633) Dictyostelium discoideum cDNA clone:ddv53g02, 5' ...  1132   0.0    1
(BJ424545) Dictyostelium discoideum cDNA clone:ddv52f20, 5' ...  1132   0.0    1
(X00601) Dictyostelium discoideum ribosomal RNA gene.            1124   0.0    1
(BJ419433) Dictyostelium discoideum cDNA clone:ddv36h06, 5' ...  1118   0.0    1
(BJ418937) Dictyostelium discoideum cDNA clone:ddv34d14, 5' ...  1118   0.0    1
(DQ340385) Dictyostelium citrinum 17S ribosomal RNA, 5.8S ri...  1098   0.0    1
(BJ419742) Dictyostelium discoideum cDNA clone:ddv37e06, 5' ...  1055   0.0    1
(BJ424189) Dictyostelium discoideum cDNA clone:ddv51m16, 5' ...  1037   0.0    1
dna update 2008.11.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000497_644(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    60   2e-14
U12823_1(U12823|pid:none) Acanthamoeba polyphaga CDC:0187:1 hemo...    43   3e-05
EU955547_1(EU955547|pid:none) Zea mays clone 1536647 hypothetica...    45   0.002
BX649622_1(BX649622|pid:none) Zebrafish DNA sequence from clone ...    32   9.6
BC095823_1(BC095823|pid:none) Danio rerio vomeronasal 2 receptor...    32   9.6
protein update 2009. 3.13
PSORT 

 psg: 0.89  gvh: 0.47  alm: 0.54  top: 0.40  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: nuclear
	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VHL204 is nuc
5' end seq. ID VHL204F
5' end seq. 
>VHL204F.Seq
GTATTCTAGTTCCATCTTGTAAAGACAATGATTAGCAGTTTCGGGGGCGTAATGCTCTCA
GCTGATTCTCAAACTCTGAACGGGTGGGTATCATTTTAATTCACTTAATTGGATTTTAAA
ATTAAATTGCACATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTGGTAAGCA
GAACTGGCGATGTGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCACTAATAGA
TACCACAAAAGGTGTTAGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGTCGGTATCC
GCTAAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGATGACGCT
AGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGTGTAGGA
AGGCGTGAAGGTAACGTANAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTTTAGTGCAG
ATCTTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTTGAAGGCCGAAGTGGGGAAGG
GTTCCATAACAATGGAATTCACTTATGGGTGAGTNNNNNNNNNN
Length of 5' end seq. 584
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -