>VHL182 (VHL182Q) /CSM/VH/VHL1-D/VHL182Q.Seq.d/
XXXXXXXXXXATTGGAAATTACCAATGAAGATTCAACCATTGTTGCAATGCCAAAGGTTG
GTGATATCGTTAAATTCAAATCTCAACATGACAAGAAATGGCATCGTTCAAAGATTACCT
CTATCGCCGATGGTAAAATCAATGTTAATCTCATTGATTTGGGTGAAAGAGAATCTTTCC
CACAATCTCAATCAAGTACTCTCATTAGAAATATCAATCATAAATTACAAAGCCTTCCTT
CATTGGTAACTTTGGTCAAATTAGCCTCTTGTAAGAATCCTTCCAATGATGATATCTACA
ATGATGCTATGGATTTCATGGAAAAAGAGTTTTTAGATCTCAAAGTTGGCGTTAATATCA
TACGTGATATCGATGGTACTCAACATGTTCTCCTCTCTGATAATGCTGGTATTATCAATG
GTGAATTGGTTCGTAATGGTTTGGTTAGTGTCGATCGTTCAACTAAATTACCCTCAATTC
AACAACTTCAAGATGAAGAACAAAAAGCTAAATCAAAGAGATTAGGTGTTTGGAGATTCG
GTGATATCGATAGTGATGATGAAGAGTGATAAACCACGTTCAAATTTCAAAGGTAAAGGT
GGTAAACCAATTTCAAAAAAATAATTATAATAATTTATAAATTTTCTTTTTATTTAAATA
AATAAATAAATAAATAAAAAAGGATAAAAATAAAAATAAAAAGAATTAGCATATAAAAAT
AAAAATAAAATAAAAAACAATTTTTAAAA

---LEITNEDSTIVAMPKVGDIVKFKSQHDKKWHRSKITSIADGKINVNLIDLGERESFP
QSQSSTLIRNINHKLQSLPSLVTLVKLASCKNPSNDDIYNDAMDFMEKEFLDLKVGVNII
RDIDGTQHVLLSDNAGIINGELVRNGLVSVDRSTKLPSIQQLQDEEQKAKSKRLGVWRFG
DIDSDDEE**ttfkfqr*rw*tnfkkiiiiiykfsfylnk*ink*krikikikrisi*k*
k*nkkqflk

Frame A:
---LEITNEDSTIVAMPKVGDIVKFKSQHDKKWHRSKITSIADGKINVNLIDLGERESFP
QSQSSTLIRNINHKLQSLPSLVTLVKLASCKNPSNDDIYNDAMDFMEKEFLDLKVGVNII
RDIDGTQHVLLSDNAGIINGELVRNGLVSVDRSTKLPSIQQLQDEEQKAKSKRLGVWRFG
DIDSDDEE**ttfkfqr*rw*tnfkkiiiiiykfsfylnk*ink*krikikikrisi*k*
k*nkkqflk


Frame B:
---wklpmkiqpllqcqrlvislnsnlnmtrngivqrlplspmvksmlisliwvkenlsh
nlnqvlsleisiinykaflhw*lwsn*plvrilpmmistmmlwiswkksf*isklalisy
vismvlnmfsslimlvlsmvnwfvmvwlvsivqlnypqfnnfkmknkklnqrd*vfgdsv
isivmmksdkprsnfkgkggkpiskk*l**finflfi*ink*inkkg*k*k*kelayknk
nkiknnf*


Frame C:
---gnyq*rfnhccnakgw*yr*iqist*qemasfkdylyrrw*nqc*sh*fg*krifpt
isikysh*kyqs*itkpsfignfgqisll*esfq**ylq*cygfhgkrvfrsqswr*yht
*yrwystcspl**cwyyqw*igs*wfg*crsfn*itlnsttsr*rtks*ikeircleir*
yr****rvinhvqiskvkvvnqfqknnynnl*ifflfk*ink*ikkdknknkkn*hikik
ik*ktifk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL182 (VHL182Q) /CSM/VH/VHL1-D/VHL182Q.Seq.d/                       1185   0.0
AHH442 (AHH442Q) /CSM/AH/AHH4-B/AHH442Q.Seq.d/                       1168   0.0
VHQ162 (VHQ162Q) /CSM/VH/VHQ1-C/VHQ162Q.Seq.d/                       1162   0.0
VHP896 (VHP896Q) /CSM/VH/VHP8-D/VHP896Q.Seq.d/                       1162   0.0
VHN113 (VHN113Q) /CSM/VH/VHN1-A/VHN113Q.Seq.d/                       1162   0.0
VHL165 (VHL165Q) /CSM/VH/VHL1-C/VHL165Q.Seq.d/                       1162   0.0
VHB524 (VHB524Q) /CSM/VH/VHB5-A/VHB524Q.Seq.d/                       1162   0.0
SHL548 (SHL548Q) /CSM/SH/SHL5-B/SHL548Q.Seq.d/                       1162   0.0
SHK270 (SHK270Q) /CSM/SH/SHK2-C/SHK270Q.Seq.d/                       1162   0.0
SHC258 (SHC258Q) /CSM/SH/SHC2-C/SHC258Q.Seq.d/                       1162   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

S71345|S71345.1 m33-B isoform=CD33 antigen homolog {alternatively spliced} [mice, BALB/c, bone marrow, mRNA, 1962 nt].    50   0.046  1
AC079543|AC079543.1 Mus musculus clone RP23-381P16, WORKING DRAFT SEQUENCE, 67 unordered pieces.    50   0.046  1
AC123550|AC123550.5 Mus musculus chromosome 7 clone RP24-289C13, complete sequence.    50   0.046  1
BB316987|BB316987.2 Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230367C17, 3' end partial sequence.    50   0.046  1
BY537903|BY537903.1 Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630320E07, 3' end partial sequence.    50   0.046  1
S71403|S71403.1 m33-A isoform=CD33 antigen homolog {alternatively spliced} [mice, BALB/c, bone marrow, mRNA, 1879 nt].    50   0.046  1
BY551143|BY551143.1 Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F730219C02, 3' end partial sequence.    50   0.046  1
AI604875|AI604875.1 me34f05.x1 Soares mouse embryo NbME13.5 14.5 Mus musculus cDNA clone IMAGE:389409 3' similar to TR:Q63994 Q63994 CD33 ANTIGEN ;, mRNA sequence.    50   0.046  1
BY531069|BY531069.1 Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630211E09, 3' end partial sequence.    50   0.046  1
AC002130|AC002130.2 Genomic sequence for Arabidopsis thaliana BAC F1N21 from chromosome I, complete sequence.    48   0.18   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM270128_12(AM270128|pid:none) Aspergillus niger contig An07c010...    74   4e-12
(Q7KZF4) RecName: Full=Staphylococcal nuclease domain-containing...    69   1e-10
I38968(I38968) 100 kDa coactivator - human  &U22055_1(U22055|pid...    69   1e-10
AB209510_1(AB209510|pid:none) Homo sapiens mRNA for EBNA-2 co-ac...    69   1e-10
(Q5REU4) RecName: Full=Staphylococcal nuclease domain-containing...    69   2e-10
CR859718_1(CR859718|pid:none) Pongo abelii mRNA; cDNA DKFZp469N2...    69   2e-10
AM920436_1693(AM920436|pid:none) Penicillium chrysogenum Wiscons...    68   4e-10
(Q863B3) RecName: Full=Staphylococcal nuclease domain-containing...    67   6e-10
AK162432_1(AK162432|pid:none) Mus musculus 12 days embryo embryo...    65   3e-09
AK159837_1(AK159837|pid:none) Mus musculus osteoclast-like cell ...    65   3e-09

 psg: 0.75  gvh: 0.33  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: plasma membrane

>> prediction for VHL182 is cyt

>VHL182Z.Seq
NNNNNNNNNNATTGGAAATTACCAATGAAGATTCAACCATTGTTGCAATGCCAAAGGTTG
GTGATATCGTTAAATTCAAATCTCAACATGACAAGAAATGGCATCGTTCAAAGATTACCT
CTATCGCCGATGGTAAAATCAATGTTAATCTCATTGATTTGGGTGAAAGAGAATCTTTCC
CACAATCTCAATCAAGTACTCTCATTAGAAATATCAATCATAAATTACAAAGCCTTCCTT
CATTGGTAACTTTGGTCAAATTAGCCTCTTGTAAGAATCCTTCCAATGATGATATCTACA
ATGATGCTATGGATTTCATGGAAAAAGAGTTTTTAGATCTCAAAGTTGGCGTTAATATCA
TACGTGATATCGATGGTACTCAACATGTTCTCCTCTCTGATAATGCTGGTATTATCAATG
GTGAATTGGTTCGTAATGGTTTGGTTAGTGTCGATCGTTCAACTAAATTACCCTCAATTC
AACAACTTCAAGATGAAGAACAAAAAGCTAAATCAAAGAGATTAGGTGTTTGGAGATTCG
GTGATATCGATAGTGATGATGAAGAGTGATAAACCACGTTCAAATTTCAAAGGTAAAGGT
GGTAAACCAATTTCAAAAAAATAATTATAATAATTTATAAATTTTCTTTTTATTTAAATA
AATAAATAAATAAATAAAAAAGGATAAAAATAAAAATAAAAAGAATTAGCATATAAAAAT
AAAAATAAAATAAAAAACAATTTTTAAAA