VHL178
Library VH
(Link to library)
Clone ID VHL178
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16596-1
Original site URL
Representative seq. ID VHL178P
(Link to Original site)
Representative DNA sequence
>VHL178 (VHL178Q) /CSM/VH/VHL1-D/VHL178Q.Seq.d/
GATCGTTCGAATCAACTCTTGTTGTTTGTTTGAAAATCAAATCAATTTCCTTTAAAGATA
GTTTTTTAAAGAAAAATGGCACCACCAACAAAAGAATTAACAAATAAAGAGATTACAGCA
ATCAAGGGTATTTCAAAATTATTTGATGATAAGAAATACAGTAAAGGTTTAAAAGAGTGT
AATGCAATTTTAAAGAATCATCCAGAAAATCCAGATGCATCATGTTTTAAGAGTTTGATT
TTATACAATTTAGAACAACAATATGAAGCACGTGAAAATGCAATCAAAACCACCAAAACC
TTACCAACCAACTCAATGGCATGGCATACATTAGGTTACATTTATAAATTGGATAAGAAC
TATCTCGATGCAACTACAGCCTTTAAAAATGCTTCAAAATTCAATAAAGAAAGTTCACAA
ATCTTAAAAGAATTAGCACCACTTCAATTATATTCAAGAGATTTAGAAGGTTTAAAGGAA
ACGTATGCAACATTATTAAAATTACAACCAACTCATAAACCACATTGGACAGGATTAGTG
ACTACATATCAATTAATGGGACAAACTAAATCANCATTATCAGTATTTGAAAGATATTTA
GATAXXXXXXXXXXGGAACCAAAGAAAGATCCAAACACTGGTCTCACCATTCCAGAGGAT
GACGATTTGAATGGTAAAAAGTTCTTGGTTAAACAAGTTGATCTCATGGATTCAGCTCAA
CTCATTTTAGATAATCTCTTGAAAAATACAAATGATATTGAAATTTATTCATTAGCTTGC
CAAGTTAATACACATCAAAAGAAATATTTATTAGTATTAAAATCATTGGTTAAAATTAAA
TCAATTAATGAAAATAGTCCATGTTATTATGAAAATTTAGTTGATTTAATGATTAAAGTA
TCAGAAGATAAAGAGGTATCAGCAATTGTTAAAGCAGCAGTTGAAAAACAAGCAGGTTTT
TCATCAGATGTTGAATCAATTTTAGCAAACAACCAAACTTATCTCGAAAAACTTGGTGAC
AATGTTACCGCTCAACATCGTTTCGTTGTTGGTAAAATCATTGCCAAACTTTCACCATCA
TCACTTGATAAAGCATCAGAATTGATTTTGAATGTTCAAGGTGAAACAAGTTGGAAACAA
TGCGCTGACAACCTTCAATCTCTTTCTCTTGTATCTTCCGAACTCACTTCTAAATACAGA
GAAAAATTACACGAACATTTCCCAATTGCTAACTATTTCCAACCAAAAGTNAAAATTATT
CAAAATAAAAAAAATAATAATAANAATATAATA
sequence update 2002.10.25
Translated Amino Acid sequence
drsnqlllfv*ksnqfplkivf*RKMAPPTKELTNKEITAIKGISKLFDDKKYSKGLKEC
NAILKNHPENPDASCFKSLILYNLEQQYEARENAIKTTKTLPTNSMAWHTLGYIYKLDKN
YLDATTAFKNASKFNKESSQILKELAPLQLYSRDLEGLKETYATLLKLQPTHKPHWTGLV
TTYQLMGQTKSXLSVFERYLD---

---EPKKDPNTGLTIPEDDDLNGKKFLVKQVDLMDSAQLILDNLLKNTNDIEIYSLACQV
NTHQKKYLLVLKSLVKIKSINENSPCYYENLVDLMIKVSEDKEVSAIVKAAVEKQAGFSS
DVESILANNQTYLEKLGDNVTAQHRFVVGKIIAKLSPSSLDKASELILNVQGETSWKQCA
DNLQSLSLVSSELTSKYREKLHEHFPIANYFQPKVKIIQNKKNNNXNII


Translated Amino Acid sequence (All Frames)
Frame A:
drsnqlllfv*ksnqfplkivf*RKMAPPTKELTNKEITAIKGISKLFDDKKYSKGLKEC
NAILKNHPENPDASCFKSLILYNLEQQYEARENAIKTTKTLPTNSMAWHTLGYIYKLDKN
YLDATTAFKNASKFNKESSQILKELAPLQLYSRDLEGLKETYATLLKLQPTHKPHWTGLV
TTYQLMGQTKSXLSVFERYLD---

---gtkerskhwshhsrg*rfew*kvlg*ts*shgfssthfr*slekyk*y*nlfislps
*ytskeifisikiig*n*in**k*smll*kfs*fnd*sirr*rgisnc*sss*ktsrffi
rc*infskqpnlsrktw*qcyrstsfrcw*nhcqtftiit**siridfecsr*nkletmr
*qpsisfscifrthf*iqrkitrtfpnc*lfptksxnysk*kk***xyn

Frame B:
ivrinscclfenqinfl*r*ffkekwhhqqkn*qikrlqqsrvfqnylmirntvkv*ksv
mqf*riiqkiqmhhvlrv*fyti*nnnmkhvkmqskppkpyqptqwhgih*vtfinwirt
ismqlqplkmlqnsikkvhks*kn*hhfnyiqei*kv*rkrmqhy*nynqlinhigqd**
lhin*wdklnxhyqylkdi*i---

---EPKKDPNTGLTIPEDDDLNGKKFLVKQVDLMDSAQLILDNLLKNTNDIEIYSLACQV
NTHQKKYLLVLKSLVKIKSINENSPCYYENLVDLMIKVSEDKEVSAIVKAAVEKQAGFSS
DVESILANNQTYLEKLGDNVTAQHRFVVGKIIAKLSPSSLDKASELILNVQGETSWKQCA
DNLQSLSLVSSELTSKYREKLHEHFPIANYFQPKVKIIQNKKNNNXNII

Frame C:
sfestlvvclkiksisfkdsflkkngttnkrink*rdysnqgyfkii***eiq*rfkrv*
cnfkessrksrcimf*efdfiqfrtti*st*kcnqnhqnltnqlngmayirlhl*ig*el
srcnysl*kcfkiq*rkftnlkristtsiifkrfrrfkgnvcniikittns*ttldrisd
yisingtn*ixiisi*kifr---

---nqrkiqtlvspfqrmti*mvksswlnkliswiqlnsf*iis*kiqmilkfih*lakl
ihikrniy*y*nhwlklnqlmkivhvimki*li**lkyqkikryqqllkqqlknkqvfhq
mlnqf*qttklisknlvtmlplnivsllvkslpnfhhhhlikhqn*f*mfkvkqvgnnal
ttfnlfllylpnsllnteknytnisqlltisnqkxklfkikkiiixi*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHL178 (VHL178Q) /CSM/VH/VHL1-D/VHL178Q.Seq.d/ 2401 0.0
VHO243 (VHO243Q) /CSM/VH/VHO2-B/VHO243Q.Seq.d/ 1241 0.0
VHN110 (VHN110Q) /CSM/VH/VHN1-A/VHN110Q.Seq.d/ 1241 0.0
VHM857 (VHM857Q) /CSM/VH/VHM8-C/VHM857Q.Seq.d/ 1241 0.0
VHM574 (VHM574Q) /CSM/VH/VHM5-D/VHM574Q.Seq.d/ 1241 0.0
VHL150 (VHL150Q) /CSM/VH/VHL1-C/VHL150Q.Seq.d/ 1241 0.0
VHK311 (VHK311Q) /CSM/VH/VHK3-A/VHK311Q.Seq.d/ 1241 0.0
VHJ545 (VHJ545Q) /CSM/VH/VHJ5-B/VHJ545Q.Seq.d/ 1241 0.0
VHJ221 (VHJ221Q) /CSM/VH/VHJ2-A/VHJ221Q.Seq.d/ 1241 0.0
VHI896 (VHI896Q) /CSM/VH/VHI8-D/VHI896Q.Seq.d/ 1241 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ443719) Dictyostelium discoideum cDNA clone:ddv53k19, 3' ... 1283 0.0 1
(BJ444641) Dictyostelium discoideum cDNA clone:ddv57c03, 3' ... 1275 0.0 1
(BJ444558) Dictyostelium discoideum cDNA clone:ddv56c19, 3' ... 1275 0.0 1
(BJ444478) Dictyostelium discoideum cDNA clone:ddv56b16, 3' ... 1275 0.0 1
(BJ443806) Dictyostelium discoideum cDNA clone:ddv54n02, 3' ... 1275 0.0 1
(BJ443613) Dictyostelium discoideum cDNA clone:ddv53c13, 3' ... 1275 0.0 1
(BJ442818) Dictyostelium discoideum cDNA clone:ddv51f03, 3' ... 1275 0.0 1
(BJ442192) Dictyostelium discoideum cDNA clone:ddv49i06, 3' ... 1275 0.0 1
(BJ441842) Dictyostelium discoideum cDNA clone:ddv48e01, 3' ... 1275 0.0 1
(BJ437250) Dictyostelium discoideum cDNA clone:ddv33l18, 3' ... 1275 0.0 1
dna update 2008.11.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116305_76(AC116305|pid:none) Dictyostelium discoideum chromoso... 377 e-103
EU952143_1(EU952143|pid:none) Zea mays clone 1211771 hypothetica... 107 9e-22
BC142456_1(BC142456|pid:none) Bos taurus NMDA receptor regulated... 107 9e-22
BX640665_1(BX640665|pid:none) Homo sapiens mRNA; cDNA DKFZp686O0... 106 2e-21
(Q6N069) RecName: Full=NMDA receptor-regulated 1-like protein; ... 106 2e-21
AK118131_1(AK118131|pid:none) Arabidopsis thaliana At1g80410 mRN... 105 3e-21
AY391464_1(AY391464|pid:none) Danio rerio transcriptional coacti... 102 2e-20
AP007155_890(AP007155|pid:none) Aspergillus oryzae RIB40 genomic... 102 2e-20
BC044392_1(BC044392|pid:none) Danio rerio NMDA receptor-regulate... 102 2e-20
AC018849_25(AC018849|pid:none) Arabidopsis thaliana chromosome 1... 101 5e-20
protein update 2009. 7.15
PSORT

psg: 0.63 gvh: 0.23 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
24.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for VHL178 is nuc

5' end seq. ID VHL178F
5' end seq.
>VHL178F.Seq
GATCGTTCGAATCAACTCTTGTTGTTTGTTTGAAAATCAAATCAATTTCCTTTAAAGATA
GTTTTTTAAAGAAAAATGGCACCACCAACAAAAGAATTAACAAATAAAGAGATTACAGCA
ATCAAGGGTATTTCAAAATTATTTGATGATAAGAAATACAGTAAAGGTTTAAAAGAGTGT
AATGCAATTTTAAAGAATCATCCAGAAAATCCAGATGCATCATGTTTTAAGAGTTTGATT
TTATACAATTTAGAACAACAATATGAAGCACGTGAAAATGCAATCAAAACCACCAAAACC
TTACCAACCAACTCAATGGCATGGCATACATTAGGTTACATTTATAAATTGGATAAGAAC
TATCTCGATGCAACTACAGCCTTTAAAAATGCTTCAAAATTCAATAAAGAAAGTTCACAA
ATCTTAAAAGAATTAGCACCACTTCAATTATATTCAAGAGATTTAGAAGGTTTAAAGGAA
ACGTATGCAACATTATTAAAATTACAACCAACTCATAAACCACATTGGACAGGATTAGTG
ACTACATATCAATTAATGGGACAAACTAAATCANCATTATCAGTATTTGAAAGATATTTA
GATANNNNNNNNNN
Length of 5' end seq. 614
3' end seq. ID VHL178Z
3' end seq.
>VHL178Z.Seq
NNNNNNNNNNGGAACCAAAGAAAGATCCAAACACTGGTCTCACCATTCCAGAGGATGACG
ATTTGAATGGTAAAAAGTTCTTGGTTAAACAAGTTGATCTCATGGATTCAGCTCAACTCA
TTTTAGATAATCTCTTGAAAAATACAAATGATATTGAAATTTATTCATTAGCTTGCCAAG
TTAATACACATCAAAAGAAATATTTATTAGTATTAAAATCATTGGTTAAAATTAAATCAA
TTAATGAAAATAGTCCATGTTATTATGAAAATTTAGTTGATTTAATGATTAAAGTATCAG
AAGATAAAGAGGTATCAGCAATTGTTAAAGCAGCAGTTGAAAAACAAGCAGGTTTTTCAT
CAGATGTTGAATCAATTTTAGCAAACAACCAAACTTATCTCGAAAAACTTGGTGACAATG
TTACCGCTCAACATCGTTTCGTTGTTGGTAAAATCATTGCCAAACTTTCACCATCATCAC
TTGATAAAGCATCAGAATTGATTTTGAATGTTCAAGGTGAAACAAGTTGGAAACAATGCG
CTGACAACCTTCAATCTCTTTCTCTTGTATCTTCCGAACTCACTTCTAAATACAGAGAAA
AATTACACGAACATTTCCCAATTGCTAACTATTTCCAACCAAAAGTNAAAATTATTCAAA
ATAAAAAAAATAATAATAANAATATAATA
Length of 3' end seq. 689
Connected seq. ID VHL178P
Connected seq.
>VHL178P.Seq
GATCGTTCGAATCAACTCTTGTTGTTTGTTTGAAAATCAAATCAATTTCCTTTAAAGATA
GTTTTTTAAAGAAAAATGGCACCACCAACAAAAGAATTAACAAATAAAGAGATTACAGCA
ATCAAGGGTATTTCAAAATTATTTGATGATAAGAAATACAGTAAAGGTTTAAAAGAGTGT
AATGCAATTTTAAAGAATCATCCAGAAAATCCAGATGCATCATGTTTTAAGAGTTTGATT
TTATACAATTTAGAACAACAATATGAAGCACGTGAAAATGCAATCAAAACCACCAAAACC
TTACCAACCAACTCAATGGCATGGCATACATTAGGTTACATTTATAAATTGGATAAGAAC
TATCTCGATGCAACTACAGCCTTTAAAAATGCTTCAAAATTCAATAAAGAAAGTTCACAA
ATCTTAAAAGAATTAGCACCACTTCAATTATATTCAAGAGATTTAGAAGGTTTAAAGGAA
ACGTATGCAACATTATTAAAATTACAACCAACTCATAAACCACATTGGACAGGATTAGTG
ACTACATATCAATTAATGGGACAAACTAAATCANCATTATCAGTATTTGAAAGATATTTA
GATA----------GGAACCAAAGAAAGATCCAAACACTGGTCTCACCATTCCAGAGGAT
GACGATTTGAATGGTAAAAAGTTCTTGGTTAAACAAGTTGATCTCATGGATTCAGCTCAA
CTCATTTTAGATAATCTCTTGAAAAATACAAATGATATTGAAATTTATTCATTAGCTTGC
CAAGTTAATACACATCAAAAGAAATATTTATTAGTATTAAAATCATTGGTTAAAATTAAA
TCAATTAATGAAAATAGTCCATGTTATTATGAAAATTTAGTTGATTTAATGATTAAAGTA
TCAGAAGATAAAGAGGTATCAGCAATTGTTAAAGCAGCAGTTGAAAAACAAGCAGGTTTT
TCATCAGATGTTGAATCAATTTTAGCAAACAACCAAACTTATCTCGAAAAACTTGGTGAC
AATGTTACCGCTCAACATCGTTTCGTTGTTGGTAAAATCATTGCCAAACTTTCACCATCA
TCACTTGATAAAGCATCAGAATTGATTTTGAATGTTCAAGGTGAAACAAGTTGGAAACAA
TGCGCTGACAACCTTCAATCTCTTTCTCTTGTATCTTCCGAACTCACTTCTAAATACAGA
GAAAAATTACACGAACATTTCCCAATTGCTAACTATTTCCAACCAAAAGTNAAAATTATT
CAAAATAAAAAAAATAATAATAANAATATAATA
Length of connected seq. 1283
Full length Seq ID -
Full length Seq. -
Length of full length seq. -