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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHL157
Library VH
(Link to library)
Clone ID VHL157
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VHL157P
(Link to Original site)
Representative DNA sequence 
>VHL157 (VHL157Q) /CSM/VH/VHL1-C/VHL157Q.Seq.d/
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTXXXXXXXXXXGGATAAAAATGATGCCATGAACATTTGGTCT
TTCGGTCCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATAT
TTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTT
GTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACT
GATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCT
GCTGAATTAACTGCCTCCCCAACTNTNTTAGAACCAATNTACTTAGTAGAAATTACTGCC
CCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTANAGGTATTGTTATT
GGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTA
GAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAA
TGTGTNTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAA
GTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTGACAAAT
TCCACGAAAAACTCTAAACAATTTAAGTCGCACTTTAGTTTTCAAAGGAGAATCAAATCA
AAAAAAATTTAAAAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE
EAYLS---

---DKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDENMR
GIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTXLEPXYLVEITAPENAIGG
IYSVLNRRXGIVIGEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQCVFDHWA
SIGVVNKDKKATEVALATRKRKGLAPEIPDLTNSTKNSKQFKSHFSFQRRIKSKKI*kk
Translated Amino Acid sequence (All Frames) 
Frame A:
nsrvqkk*stkwlisqsikfvplwtvvkiseicllllmsitvkplyqil*skelvllpik
flvi*dichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnf*silsipqvtlis
vqk*llpsvllmvl*slsiaskvfaykpklyyvkpslnvsnqsysstksivsy*nsn*tl
kklisl---

---g*k*chehlvfrsrr*rcqsprqchqrcsife*n*rffrwcfpmghqrrccl**khe
rypfqsl*chpph*chpqrwwsnhpncssctlcc*inclpnxxrtnxlsrnycprkryww
yllctqssxrycyw*rtsyrfpiilcqssftsirilrfhr*ftfphcrssfptmcxrslg
fnwccqqr*esh*srfshqkekrfsprnprsdkfhekl*ti*val*fskenqikknlkkk

Frame B:
tleckkskvqng*fhnrsnschygps*kyqkyvcycscrsr*nhfirffnpkswyycr*s
fw*yeiyvmsc**trawyhh*ificitslrnakgrqitswlyftrifnqsyrfprsr*fq
frsnccppcy*wcfsryrlrrrclrtnrncitssrr*tyqtslirqqsrsflirtpikh*
rslslf---

---DKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDENMR
GIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTXLEPXYLVEITAPENAIGG
IYSVLNRRXGIVIGEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQCVFDHWA
SIGVVNKDKKATEVALATRKRKGLAPEIPDLTNSTKNSKQFKSHFSFQRRIKSKKI*kk

Frame C:
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE
EAYLS---

---ikmmp*tfglsvqkvtvpisssmspkvfni*mklkilslvlsngppkkvlfvmkt*e
vsvsifmmspstlmpstevvvkssqllvvysmlln*lppqlx*nqxt**kllpqktllvv
ftlysivvxvlllvknvvsvphyslskliyqy*npsvspliyvptlpvklshnvxsiigl
qlvlstkirkplksl*pperekv*pqksqi*qiprktlnnlsrtlvfkgesnqkkfkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL157 (VHL157Q) /CSM/VH/VHL1-C/VHL157Q.Seq.d/                       2367   0.0
VHM188 (VHM188Q) /CSM/VH/VHM1-D/VHM188Q.Seq.d/                       1318   0.0
VHL735 (VHL735Q) /CSM/VH/VHL7-B/VHL735Q.Seq.d/                       1318   0.0
VHM782 (VHM782Q) /CSM/VH/VHM7-D/VHM782Q.Seq.d/                       1312   0.0
VHM747 (VHM747Q) /CSM/VH/VHM7-B/VHM747Q.Seq.d/                       1312   0.0
VHM509 (VHM509Q) /CSM/VH/VHM5-A/VHM509Q.Seq.d/                       1312   0.0
VHL587 (VHL587Q) /CSM/VH/VHL5-D/VHL587Q.Seq.d/                       1312   0.0
VHL583 (VHL583Q) /CSM/VH/VHL5-D/VHL583Q.Seq.d/                       1312   0.0
VHL314 (VHL314Q) /CSM/VH/VHL3-A/VHL314Q.Seq.d/                       1312   0.0
VHL137 (VHL137Q) /CSM/VH/VHL1-B/VHL137Q.Seq.d/                       1312   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ443605) Dictyostelium discoideum cDNA clone:ddv53a15, 3' ...  1334   0.0    1
(BJ444580) Dictyostelium discoideum cDNA clone:ddv56g19, 3' ...  1308   0.0    1
(BJ444565) Dictyostelium discoideum cDNA clone:ddv56d21, 3' ...  1308   0.0    1
(BJ444458) Dictyostelium discoideum cDNA clone:ddv56n11, 3' ...  1308   0.0    1
(BJ444529) Dictyostelium discoideum cDNA clone:ddv56m15, 3' ...  1304   0.0    1
(BJ444308) Dictyostelium discoideum cDNA clone:ddv55o21, 3' ...  1304   0.0    1
(BJ443842) Dictyostelium discoideum cDNA clone:ddv54f09, 3' ...  1304   0.0    1
(BJ444766) Dictyostelium discoideum cDNA clone:ddv57k12, 3' ...  1302   0.0    1
(BJ444562) Dictyostelium discoideum cDNA clone:ddv56c23, 3' ...  1302   0.0    1
(BJ444526) Dictyostelium discoideum cDNA clone:ddv56l18, 3' ...  1302   0.0    1
dna update 2008.11.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation...   270   1e-70
AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat...   270   1e-70
BT071866_1(BT071866|pid:none) Salmo salar clone ssal-rgf-501-088...   268   2e-70
BT059038_1(BT059038|pid:none) Salmo salar clone ssal-rgf-521-328...   268   2e-70
A40411(A40411) translation elongation factor eEF-2 - Caenorhabdi...   268   4e-70
BT045031_1(BT045031|pid:none) Salmo salar clone ssal-rgf-510-120...   268   4e-70
DQ848932_1(DQ848932|pid:none) Scophthalmus maximus clone kbc101 ...   267   5e-70
BT072304_1(BT072304|pid:none) Salmo salar clone ssal-rgf-520-280...   267   5e-70
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote...   266   9e-70
BC060707_1(BC060707|pid:none) Mus musculus eukaryotic translatio...   264   5e-69
protein update 2009. 7.15
PSORT 

 psg: 0.71  gvh: 0.38  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  8.0 %: peroxisomal
	  4.0 %: vacuolar

>> prediction for VHL157 is nuc
5' end seq. ID VHL157F
5' end seq. 
>VHL157F.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTNNNNNNNNNN
Length of 5' end seq. 569
3' end seq. ID VHL157Z
3' end seq. 
>VHL157Z.Seq
NNNNNNNNNNGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACG
GTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATT
CTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGA
GAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTG
GTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCC
CAACTNTNTTAGAACCAATNTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTG
GTATTTACTCTGTACTCAATCGTCGTANAGGTATTGTTATTGGTGAAGAACGTCGTATCG
GTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCG
CTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTNTTCGATCATTGGG
CTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAA
AGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTGACAAATTCCACGAAAAACTCTAAAC
AATTTAAGTCGCACTTTAGTTTTCAAAGGAGAATCAAATCAAAAAAAATTTAAAAAAAAA
A
Length of 3' end seq. 721
Connected seq. ID VHL157P
Connected seq. 
>VHL157P.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTT----------GGATAAAAATGATGCCATGAACATTTGGTCT
TTCGGTCCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATAT
TTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTT
GTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACT
GATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCT
GCTGAATTAACTGCCTCCCCAACTNTNTTAGAACCAATNTACTTAGTAGAAATTACTGCC
CCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTANAGGTATTGTTATT
GGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTA
GAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAA
TGTGTNTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAA
GTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTGACAAAT
TCCACGAAAAACTCTAAACAATTTAAGTCGCACTTTAGTTTTCAAAGGAGAATCAAATCA
AAAAAAATTTAAAAAAAAAA
Length of connected seq. 1270
Full length Seq ID -
Full length Seq. -
Length of full length seq. -