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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHL151
Library VH
(Link to library)
Clone ID VHL151
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15810-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHL151 (VHL151Q) /CSM/VH/VHL1-C/VHL151Q.Seq.d/
ATCCTCCCCCAAATTTGTACATATAAAACAAATAAATAAATAAATATAAATAAATAAATA
AATAAATAAATAAATAAATAAATAATGACTGAAAATAAAACTGTATTATATTCATATTGG
AGATCATCATGTTCATGGAGAGTCAGAGTAGCACTTGCTTATAAGAAAATCAAATATGAA
TATAAAGCAATTCATTTACTTAAAGATGGTGGTCAACAAAAATCAGACGAATATTCAAAA
TTAAATCCAATGAAAGCAATTCCAACATTAGAAATTGATGGACATATAATTGGACAATCA
TTAGCAATTTTAGAATATTTAGAGGAAACACACCCAGAGAATCCACTTATGCCAAAGGGA
TCATATGAACGTGCAATTGCAAGACAAATGATGCAAATTATTGGATCAGATATTCAACCA
CTTCAAAATTTAAAGGTCTTAGGATTAATTGCTCAATATAGTGGTGACGATTCTAAAAAA
TCTGAATGGGCACGTACTGTAATTACAAATGGTTTCAATGGTTTAGAGAAATTATTAGAA
AAACATAGTGGCAAATTTTGTGTTGGTGATAGTGTTAGCTTTGCTGATCTCTGTTTACCT
GCTCAAGTTXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
ilpqictyktnk*inink*ink*ink*IMTENKTVLYSYWRSSCSWRVRVALAYKKIKYE
YKAIHLLKDGGQQKSDEYSKLNPMKAIPTLEIDGHIIGQSLAILEYLEETHPENPLMPKG
SYERAIARQMMQIIGSDIQPLQNLKVLGLIAQYSGDDSKKSEWARTVITNGFNGLEKLLE
KHSGKFCVGDSVSFADLCLPAQ---
Translated Amino Acid sequence (All Frames) 
Frame A:
ilpqictyktnk*inink*ink*ink*IMTENKTVLYSYWRSSCSWRVRVALAYKKIKYE
YKAIHLLKDGGQQKSDEYSKLNPMKAIPTLEIDGHIIGQSLAILEYLEETHPENPLMPKG
SYERAIARQMMQIIGSDIQPLQNLKVLGLIAQYSGDDSKKSEWARTVITNGFNGLEKLLE
KHSGKFCVGDSVSFADLCLPAQ---


Frame B:
sspkfvhikqink*i*ink*ink*ink**lkiklyyihigdhhvhgese*hllirksnmn
ikqfiylkmvvnknqtniqn*iq*kqfqh*klmdi*ldnh*qf*ni*rkhtqrihlcqrd
hmnvqlqdk*cklldqifnhfki*rs*d*llnivvtilknlnghvl*lqmvsmv*rny*k
nivanfvlvivlallisvyllk---


Frame C:
pppnlyi*nk*inkyk*ink*ink*innd*k*nciifileiimfmesqsstcl*enqi*i
*snsft*rwwstkirrifkiksnesnsnirn*wtynwtiisnfrifrgntprestyakgi
i*tcncktndanywirysttskfkglrincsi*w*rf*ki*mgtycnykwfqwfreiirk
t*wqilcw**c*lc*slftcss---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL151 (VHL151Q) /CSM/VH/VHL1-C/VHL151Q.Seq.d/                       1009   0.0
AHO796 (AHO796Q) /CSM/AH/AHO7-D/AHO796Q.Seq.d/                        995   0.0
AHO596 (AHO596Q) /CSM/AH/AHO5-D/AHO596Q.Seq.d/                        995   0.0
VSI394 (VSI394Q) /CSM/VS/VSI3-D/VSI394Q.Seq.d/                        967   0.0
SSC633 (SSC633Q) /CSM/SS/SSC6-B/SSC633Q.Seq.d/                        894   0.0
SFE170 (SFE170Q) /CSM/SF/SFE1-C/SFE170Q.Seq.d/                        430   e-119
VSA131 (VSA131Q) /CSM/VS/VSA1-B/VSA131Q.Seq.d/                         96   8e-19
CHI204 (CHI204Q) /CSM/CH/CHI2-A/CHI204Q.Seq.d/                         42   0.010
VFO779 (VFO779Q) /CSM/VF/VFO7-D/VFO779Q.Seq.d/                         36   0.61
VFM575 (VFM575Q) /CSM/VF/VFM5-D/VFM575Q.Seq.d/                         36   0.61
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ424774) Dictyostelium discoideum cDNA clone:ddv53e13, 5' ...  1009   0.0    2
(AU268630) Dictyostelium discoideum vegetative cDNA clone:VS...  1009   0.0    1
(BJ338337) Dictyostelium discoideum cDNA clone:dda60p23, 5' ...   753   0.0    3
(BJ356636) Dictyostelium discoideum cDNA clone:dda60o23, 3' ...   753   0.0    2
(AU268629) Dictyostelium discoideum vegetative cDNA clone:VS...   704   0.0    4
(C84072) Dictyostelium discoideum slug cDNA, clone SSC633.        692   0.0    1
(AU071850) Dictyostelium discoideum slug cDNA, clone SSC633.      476   e-130  1
(BJ388456) Dictyostelium discoideum cDNA clone:dds9k17, 5' e...   408   e-116  2
(AU261298) Dictyostelium discoideum vegetative cDNA clone:VS...    96   2e-15  1
(EG018110) EST00610_0906 Sporophyte cDNA Library Porphyra ha...    40   6e-05  3
dna update 2008.11.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9WVL0) RecName: Full=Maleylacetoacetate isomerase;          Sh...   179   4e-44
BT076845_1(BT076845|pid:none) Caligus rogercresseyi clone crog-e...   179   6e-44
BT076399_1(BT076399|pid:none) Caligus rogercresseyi clone crog-e...   179   6e-44
BT075796_1(BT075796|pid:none) Caligus rogercresseyi clone crog-e...   177   2e-43
BT076949_1(BT076949|pid:none) Caligus rogercresseyi clone crog-e...   177   2e-43
AE014297_967(AE014297|pid:none) Drosophila melanogaster chromoso...   173   4e-42
BC112582_1(BC112582|pid:none) Bos taurus glutathione transferase...   173   4e-42
AY060732_1(AY060732|pid:none) Drosophila melanogaster GH17960 fu...   171   1e-41
(Q9VHD2) RecName: Full=Probable maleylacetoacetate isomerase 2; ...   171   1e-41
DQ355375_1(DQ355375|pid:none) Bombyx mori glutathione S-transfer...   171   2e-41
protein update 2009. 7.15
PSORT 

 psg: 0.71  gvh: 0.41  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: mitochondrial
	 24.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VHL151 is mit
5' end seq. ID VHL151F
5' end seq. 
>VHL151F.Seq
ATCCTCCCCCAAATTTGTACATATAAAACAAATAAATAAATAAATATAAATAAATAAATA
AATAAATAAATAAATAAATAAATAATGACTGAAAATAAAACTGTATTATATTCATATTGG
AGATCATCATGTTCATGGAGAGTCAGAGTAGCACTTGCTTATAAGAAAATCAAATATGAA
TATAAAGCAATTCATTTACTTAAAGATGGTGGTCAACAAAAATCAGACGAATATTCAAAA
TTAAATCCAATGAAAGCAATTCCAACATTAGAAATTGATGGACATATAATTGGACAATCA
TTAGCAATTTTAGAATATTTAGAGGAAACACACCCAGAGAATCCACTTATGCCAAAGGGA
TCATATGAACGTGCAATTGCAAGACAAATGATGCAAATTATTGGATCAGATATTCAACCA
CTTCAAAATTTAAAGGTCTTAGGATTAATTGCTCAATATAGTGGTGACGATTCTAAAAAA
TCTGAATGGGCACGTACTGTAATTACAAATGGTTTCAATGGTTTAGAGAAATTATTAGAA
AAACATAGTGGCAAATTTTGTGTTGGTGATAGTGTTAGCTTTGCTGATCTCTGTTTACCT
GCTCAAGTTNNNNNNNNNN
Length of 5' end seq. 619
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -