VHL148
Library VH
(Link to library)
Clone ID VHL148
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16283-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHL148 (VHL148Q) /CSM/VH/VHL1-B/VHL148Q.Seq.d/
CATAGTCCTGATTATTACATCTTTTTAAAACAAAAATGTTTGTTGCTAGAAGATTATCTA
AAAACATCACACAAATTAGCAAAACTGCAGTTAAAACCTCAGTTCGTGCTGTCCCAGTTA
GAGGTTTCAAAACTACTTCAGTTAACCAAGCCGCAGCACCAGCACCAAAAACTTCACAAG
AAAAAGAATACTTTGAAAAGAATAAGAGTCTTTTAGATAAAGAATCAAATGAAGAATCAA
CTGAAGTTGATTATTCAAAATTAAACGAAAATCAAGGTGTTGTACATCAAGTAATTGGTG
CCGTCGTTGATGTTTACTTCCCACACGGTAAATTACCATACATCAATGATGCTTTAATTG
TAGATGATTTCCAAGCTGAAAATGTCGAAAAAGTAATTGAAGATCTTAACAACCCATCTT
TAAAGGGTAAAATCGATTTCAACAATGTTCCAATTTCAAACATTAAATTAGTTTTAGAAG
TTGCTCAACATTTAGGTGATGGTATCGTTCGTTGTGTCGCTCTCGATATTACTGATGGTT
TANGTCGTGGTGCACTCGTCCTCAACACTGGTTCCCCATTGATGGTTCCAGTCGGTCAAG
CTACCCTTGGTCGTATTATGAACGTTATTGGTXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
*s*LLHLFKTKMFVARRLSKNITQISKTAVKTSVRAVPVRGFKTTSVNQAAAPAPKTSQE
KEYFEKNKSLLDKESNEESTEVDYSKLNENQGVVHQVIGAVVDVYFPHGKLPYINDALIV
DDFQAENVEKVIEDLNNPSLKGKIDFNNVPISNIKLVLEVAQHLGDGIVRCVALDITDGL
XRGALVLNTGSPLMVPVGQATLGRIMNVI---


Translated Amino Acid sequence (All Frames)
Frame A:
hspdyyiflkqkcllledylktshklaklqlkpqfvlsqlevskllqltkpqhqhqklhk
kkntlkrirvf*iknqmknqlkliiqn*tkikvlyik*lvpslmftshtvnyhtsmml*l
*misklkmskk*lkiltthl*rvksistmfqfqtln*f*kllni*vmvsfvvslsillmv
xvvvhssstlvph*wfqsvklplvvl*tll---


Frame B:
ivliitsf*nknvcc*kii*khhtn*qncs*nlssccps*rfqnyfs*psrststknftr
kril*ke*esfr*rik*rin*s*lfkikrksrcctssnwcrr*cllptr*itihq*cfnc
r*fps*kcrksn*rs*qpifkg*nrfqqcsnfkh*isfrscstfr*wyrslcrsryy*wf
xswctrpqhwfpidgssrssypwsyyeryw---


Frame C:
*s*LLHLFKTKMFVARRLSKNITQISKTAVKTSVRAVPVRGFKTTSVNQAAAPAPKTSQE
KEYFEKNKSLLDKESNEESTEVDYSKLNENQGVVHQVIGAVVDVYFPHGKLPYINDALIV
DDFQAENVEKVIEDLNNPSLKGKIDFNNVPISNIKLVLEVAQHLGDGIVRCVALDITDGL
XRGALVLNTGSPLMVPVGQATLGRIMNVI---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHQ261 (VHQ261Q) /CSM/VH/VHQ2-C/VHQ261Q.Seq.d/ 1247 0.0
VHL148 (VHL148Q) /CSM/VH/VHL1-B/VHL148Q.Seq.d/ 1247 0.0
VHK118 (VHK118Q) /CSM/VH/VHK1-A/VHK118Q.Seq.d/ 1247 0.0
VHI543 (VHI543Q) /CSM/VH/VHI5-B/VHI543Q.Seq.d/ 1247 0.0
VHE627 (VHE627Q) /CSM/VH/VHE6-B/VHE627Q.Seq.d/ 1247 0.0
VHE453 (VHE453Q) /CSM/VH/VHE4-C/VHE453Q.Seq.d/ 1247 0.0
VHE330 (VHE330Q) /CSM/VH/VHE3-B/VHE330Q.Seq.d/ 1247 0.0
VFN313 (VFN313Q) /CSM/VF/VFN3-A/VFN313Q.Seq.d/ 1247 0.0
VHM838 (VHM838Q) /CSM/VH/VHM8-B/VHM838Q.Seq.d/ 1245 0.0
VHM626 (VHM626Q) /CSM/VH/VHM6-B/VHM626Q.Seq.d/ 1245 0.0

own update 2004. 5.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ427789) Dictyostelium discoideum cDNA clone:ddv63i16, 5' ... 1247 0.0 1
(BJ424749) Dictyostelium discoideum cDNA clone:ddv53o11, 5' ... 1247 0.0 1
(BJ423980) Dictyostelium discoideum cDNA clone:ddv51c05, 5' ... 1247 0.0 1
(BJ423173) Dictyostelium discoideum cDNA clone:ddv48e11, 5' ... 1247 0.0 1
(BJ420743) Dictyostelium discoideum cDNA clone:ddv40e08, 5' ... 1247 0.0 1
(BJ420539) Dictyostelium discoideum cDNA clone:ddv39j14, 5' ... 1247 0.0 1
(BJ420466) Dictyostelium discoideum cDNA clone:ddv39l07, 5' ... 1247 0.0 1
(BJ416734) Dictyostelium discoideum cDNA clone:ddv27j03, 5' ... 1247 0.0 1
(BJ425648) Dictyostelium discoideum cDNA clone:ddv56l10, 5' ... 1245 0.0 1
(BJ425601) Dictyostelium discoideum cDNA clone:ddv56c08, 5' ... 1245 0.0 1
dna update 2008.11.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q1MRB8) RecName: Full=ATP synthase subunit beta; EC=3.... 106 7e-22
(A1VFJ5) RecName: Full=ATP synthase subunit beta; EC=3.... 101 2e-20
(P38482) RecName: Full=ATP synthase subunit beta, mitochondrial;... 99 8e-20
EF085070_1(EF085070|pid:none) Picea sitchensis clone WS02728_O12... 99 1e-19
(P17614) RecName: Full=ATP synthase subunit beta, mitochondrial;... 99 1e-19
(P42467) RecName: Full=ATP synthase subunit beta; EC=3.... 98 2e-19
(Q313W0) RecName: Full=ATP synthase subunit beta; EC=3.... 98 2e-19
(A0LLF8) RecName: Full=ATP synthase subunit beta; EC=3.... 98 2e-19
(A7HIX7) RecName: Full=ATP synthase subunit beta; EC=3.... 97 3e-19
GN102053_1(GN102053|pid:none) Sequence 6834 from Patent WO200903... 97 3e-19
protein update 2009. 7.15
PSORT

psg: 0.65 gvh: 0.36 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.55 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

76.0 %: mitochondrial
16.0 %: cytoplasmic
8.0 %: nuclear

>> prediction for VHL148 is mit

5' end seq. ID VHL148F
5' end seq.
>VHL148F.Seq
CATAGTCCTGATTATTACATCTTTTTAAAACAAAAATGTTTGTTGCTAGAAGATTATCTA
AAAACATCACACAAATTAGCAAAACTGCAGTTAAAACCTCAGTTCGTGCTGTCCCAGTTA
GAGGTTTCAAAACTACTTCAGTTAACCAAGCCGCAGCACCAGCACCAAAAACTTCACAAG
AAAAAGAATACTTTGAAAAGAATAAGAGTCTTTTAGATAAAGAATCAAATGAAGAATCAA
CTGAAGTTGATTATTCAAAATTAAACGAAAATCAAGGTGTTGTACATCAAGTAATTGGTG
CCGTCGTTGATGTTTACTTCCCACACGGTAAATTACCATACATCAATGATGCTTTAATTG
TAGATGATTTCCAAGCTGAAAATGTCGAAAAAGTAATTGAAGATCTTAACAACCCATCTT
TAAAGGGTAAAATCGATTTCAACAATGTTCCAATTTCAAACATTAAATTAGTTTTAGAAG
TTGCTCAACATTTAGGTGATGGTATCGTTCGTTGTGTCGCTCTCGATATTACTGATGGTT
TANGTCGTGGTGCACTCGTCCTCAACACTGGTTCCCCATTGATGGTTCCAGTCGGTCAAG
CTACCCTTGGTCGTATTATGAACGTTATTGGTNNNNNNNNNN
Length of 5' end seq. 642
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -