VHL145
Library VH
(Link to library)
Clone ID VHL145
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16508-1
Original site URL
Representative seq. ID VHL145P
(Link to Original site)
Representative DNA sequence
>VHL145 (VHL145Q) /CSM/VH/VHL1-B/VHL145Q.Seq.d/
AGTTTATTTATGTTGAAATTGCATTTTTCCAAAGATGGTGGGATGAACAAAGTACAACAA
TGCAAAATATTGTTAAGGGTTTGGTTGAAAGTGGTCAATTGGAATTCATAAATGGTGGGT
ATTGTATGAATGATGAGGCTACTACCTACTATGACGATACTATTGACCAAATGACATTGG
GCCATCAATTCCTTTGGGAGAATTTCGGAGTTATGCCAAAGATAGGCTGGCACATAGATC
CATTTGGCCATANTGCAACACAAGCTCGTATCTTTGGTCAATTXXXXXXXXXXTCAACCA
ACCAGTGGTAATTATGTACCTGTGAATGCTATTGCCTACATTCAAGATCCTAATCAATCA
TTACAATTCACCATTGTCACTGATAGAAGTCGTGGATGTGCATCGTTAAGAGATGGTCAA
TTGGATATGATGATGCATCGTCGTACTTTGAAAGATGATGGTCGTGGTGTTGGTCAACCA
ATGAATGAGTCAACTCAAATCGTTACAACTAGTAAATTGATTTTCCATGATATTTCAAGT
TATGCTCAATCTCATTATCGTCCTGCTGCACTCTCTTTATCACATCCATTACTCCCAATG
TTTACAACCACTCAACAATCTTCAAACGATTGGAATTCTCAATATCAAGGTGTTTACTCA
CCATTGACTTCAGCCTCACCTTTACCAAATGGTTTAAAGATTCAAACTCTACAATGGTTA
GATAATCAAGATAATACCATACTTTTACGTATTGAAAATATTTATCAAATTGATGGTCAA
GATTCACAAGATCCACAAACTATCACTTTAGATCTTTCAACTATCTTTTCAACAATTACA
ATCACTTCTGCAACTGAAATGAATTTAACTGGTGTTCAAAAATTATCAAATTTATCAAGA
TTAAAATGGAAAACTGTTGANGGTAAAAACTANGATCATAAATCATCATCATCAACTAAA
GAAGATTCTTCAAA
sequence update 2002.10.25
Translated Amino Acid sequence
FIYVEIAFFQRWWDEQSTTMQNIVKGLVESGQLEFINGGYCMNDEATTYYDDTIDQMTLG
HQFLWENFGVMPKIGWHIDPFGHXATQARIFGQ---

---QPTSGNYVPVNAIAYIQDPNQSLQFTIVTDRSRGCASLRDGQLDMMMHRRTLKDDGR
GVGQPMNESTQIVTTSKLIFHDISSYAQSHYRPAALSLSHPLLPMFTTTQQSSNDWNSQY
QGVYSPLTSASPLPNGLKIQTLQWLDNQDNTILLRIENIYQIDGQDSQDPQTITLDLSTI
FSTITITSATEMNLTGVQKLSNLSRLKWKTVXGKNXDHKSSSSTKEDSS


Translated Amino Acid sequence (All Frames)
Frame A:
slfmlklhfskdggmnkvqqckillrvwlkvvnwns*mvgiv*mmrllptmtilltk*hw
ainsfgriselcqr*agt*ihlaixqhklvslvn---

---stnqw*lctcecyclhsrs*siitihhch**kswmcivkrwsigyddassyfer*ws
wcwstne*vnsnryn**idfp*yfklcsislsscctlfitsitpnvynhstifkrlefsi
srclltidfsltftkwfkdsnstmvr*sr*yhtfty*kylsn*wsrftrstnyhfrsfny
lfnnynhfcn*nefnwcskiikfikikmenc*x*klxs*iiiin*rrffk

Frame B:
vylc*ncifpkmvg*tkynnakyc*gfg*kwsigihkwwvlye**gyyll*ryy*pndig
psiplgefrsyakdrlahrsiwpxcntssylwsi---

---QPTSGNYVPVNAIAYIQDPNQSLQFTIVTDRSRGCASLRDGQLDMMMHRRTLKDDGR
GVGQPMNESTQIVTTSKLIFHDISSYAQSHYRPAALSLSHPLLPMFTTTQQSSNDWNSQY
QGVYSPLTSASPLPNGLKIQTLQWLDNQDNTILLRIENIYQIDGQDSQDPQTITLDLSTI
FSTITITSATEMNLTGVQKLSNLSRLKWKTVXGKNXDHKSSSSTKEDSS

Frame C:
FIYVEIAFFQRWWDEQSTTMQNIVKGLVESGQLEFINGGYCMNDEATTYYDDTIDQMTLG
HQFLWENFGVMPKIGWHIDPFGHXATQARIFGQ---

---nqpvvimyl*mllptfkilinhynsplslievvdvhr*emvnwi**civvl*kmmvv
vlvnq*msqlkslqlvn*fsmifqvmlnliivllhslyhihysqclqplnnlqtigilni
kvfthh*lqphlyqmv*rfklyng*iikiipyfyvlkifiklmvkihkihklsl*ifqls
fqqlqsllqlk*i*lvfknyqiyqd*ngkllxvktxiinhhhqlkkilq

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHL145 (VHL145Q) /CSM/VH/VHL1-B/VHL145Q.Seq.d/ 1853 0.0
VHQ167 (VHQ167Q) /CSM/VH/VHQ1-C/VHQ167Q.Seq.d/ 1338 0.0
VHP841 (VHP841Q) /CSM/VH/VHP8-B/VHP841Q.Seq.d/ 1338 0.0
VHP443 (VHP443Q) /CSM/VH/VHP4-B/VHP443Q.Seq.d/ 1338 0.0
VHP436 (VHP436Q) /CSM/VH/VHP4-B/VHP436Q.Seq.d/ 1338 0.0
VHO880 (VHO880Q) /CSM/VH/VHO8-D/VHO880Q.Seq.d/ 1338 0.0
VHO643 (VHO643Q) /CSM/VH/VHO6-B/VHO643Q.Seq.d/ 1338 0.0
VHN718 (VHN718Q) /CSM/VH/VHN7-A/VHN718Q.Seq.d/ 1338 0.0
VHN593 (VHN593Q) /CSM/VH/VHN5-D/VHN593Q.Seq.d/ 1338 0.0
VHM790 (VHM790Q) /CSM/VH/VHM7-D/VHM790Q.Seq.d/ 1338 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ446694) Dictyostelium discoideum cDNA clone:ddv63e17, 3' ... 1338 0.0 1
(BJ446285) Dictyostelium discoideum cDNA clone:ddv62b12, 3' ... 1338 0.0 1
(BJ446006) Dictyostelium discoideum cDNA clone:ddv61h10, 3' ... 1338 0.0 1
(BJ445996) Dictyostelium discoideum cDNA clone:ddv61f12, 3' ... 1338 0.0 1
(BJ445892) Dictyostelium discoideum cDNA clone:ddv60p20, 3' ... 1338 0.0 1
(BJ445688) Dictyostelium discoideum cDNA clone:ddv60e12, 3' ... 1338 0.0 1
(BJ445232) Dictyostelium discoideum cDNA clone:ddv58i23, 3' ... 1338 0.0 1
(BJ444970) Dictyostelium discoideum cDNA clone:ddv58d05, 3' ... 1338 0.0 1
(BJ444567) Dictyostelium discoideum cDNA clone:ddv56d23, 3' ... 1338 0.0 1
(BJ443571) Dictyostelium discoideum cDNA clone:ddv53i11, 3' ... 1338 0.0 1
dna update 2008.11.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P34098) RecName: Full=Lysosomal alpha-mannosidase; Sho... 363 6e-99
M82822_1(M82822|pid:none) Dictyostelium discoideum alpha-mannosi... 359 7e-98
AK068415_1(AK068415|pid:none) Oryza sativa Japonica Group cDNA c... 133 1e-29
AB026648_12(AB026648|pid:none) Arabidopsis thaliana genomic DNA,... 132 2e-29
AY099704_1(AY099704|pid:none) Arabidopsis thaliana alpha-mannosi... 130 9e-29
AB005230_20(AB005230|pid:none) Arabidopsis thaliana genomic DNA,... 130 9e-29
AF077741_1(AF077741|pid:none) Trypanosoma cruzi lysosomal acid a... 128 3e-28
AC148217_12(AC148217|pid:none) Medicago truncatula clone mth2-20... 123 8e-27
AK004817_1(AK004817|pid:none) Mus musculus adult male lung cDNA,... 121 4e-26
U87240_1(U87240|pid:none) Mus musculus lysosomal alpha-mannosida... 121 4e-26
protein update 2009. 7.15
PSORT

psg: 0.60 gvh: 0.41 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
28.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for VHL145 is cyt

5' end seq. ID VHL145F
5' end seq.
>VHL145F.Seq
AGTTTATTTATGTTGAAATTGCATTTTTCCAAAGATGGTGGGATGAACAAAGTACAACAA
TGCAAAATATTGTTAAGGGTTTGGTTGAAAGTGGTCAATTGGAATTCATAAATGGTGGGT
ATTGTATGAATGATGAGGCTACTACCTACTATGACGATACTATTGACCAAATGACATTGG
GCCATCAATTCCTTTGGGAGAATTTCGGAGTTATGCCAAAGATAGGCTGGCACATAGATC
CATTTGGCCATANTGCAACACAAGCTCGTATCTTTGGTCAATTNNNNNNNNNN
Length of 5' end seq. 293
3' end seq. ID VHL145Z
3' end seq.
>VHL145Z.Seq
NNNNNNNNNNTCAACCAACCAGTGGTAATTATGTACCTGTGAATGCTATTGCCTACATTC
AAGATCCTAATCAATCATTACAATTCACCATTGTCACTGATAGAAGTCGTGGATGTGCAT
CGTTAAGAGATGGTCAATTGGATATGATGATGCATCGTCGTACTTTGAAAGATGATGGTC
GTGGTGTTGGTCAACCAATGAATGAGTCAACTCAAATCGTTACAACTAGTAAATTGATTT
TCCATGATATTTCAAGTTATGCTCAATCTCATTATCGTCCTGCTGCACTCTCTTTATCAC
ATCCATTACTCCCAATGTTTACAACCACTCAACAATCTTCAAACGATTGGAATTCTCAAT
ATCAAGGTGTTTACTCACCATTGACTTCAGCCTCACCTTTACCAAATGGTTTAAAGATTC
AAACTCTACAATGGTTAGATAATCAAGATAATACCATACTTTTACGTATTGAAAATATTT
ATCAAATTGATGGTCAAGATTCACAAGATCCACAAACTATCACTTTAGATCTTTCAACTA
TCTTTTCAACAATTACAATCACTTCTGCAACTGAAATGAATTTAACTGGTGTTCAAAAAT
TATCAAATTTATCAAGATTAAAATGGAAAACTGTTGANGGTAAAAACTANGATCATAAAT
CATCATCATCAACTAAAGAAGATTCTTCAAA
Length of 3' end seq. 691
Connected seq. ID VHL145P
Connected seq.
>VHL145P.Seq
AGTTTATTTATGTTGAAATTGCATTTTTCCAAAGATGGTGGGATGAACAAAGTACAACAA
TGCAAAATATTGTTAAGGGTTTGGTTGAAAGTGGTCAATTGGAATTCATAAATGGTGGGT
ATTGTATGAATGATGAGGCTACTACCTACTATGACGATACTATTGACCAAATGACATTGG
GCCATCAATTCCTTTGGGAGAATTTCGGAGTTATGCCAAAGATAGGCTGGCACATAGATC
CATTTGGCCATANTGCAACACAAGCTCGTATCTTTGGTCAATT----------TCAACCA
ACCAGTGGTAATTATGTACCTGTGAATGCTATTGCCTACATTCAAGATCCTAATCAATCA
TTACAATTCACCATTGTCACTGATAGAAGTCGTGGATGTGCATCGTTAAGAGATGGTCAA
TTGGATATGATGATGCATCGTCGTACTTTGAAAGATGATGGTCGTGGTGTTGGTCAACCA
ATGAATGAGTCAACTCAAATCGTTACAACTAGTAAATTGATTTTCCATGATATTTCAAGT
TATGCTCAATCTCATTATCGTCCTGCTGCACTCTCTTTATCACATCCATTACTCCCAATG
TTTACAACCACTCAACAATCTTCAAACGATTGGAATTCTCAATATCAAGGTGTTTACTCA
CCATTGACTTCAGCCTCACCTTTACCAAATGGTTTAAAGATTCAAACTCTACAATGGTTA
GATAATCAAGATAATACCATACTTTTACGTATTGAAAATATTTATCAAATTGATGGTCAA
GATTCACAAGATCCACAAACTATCACTTTAGATCTTTCAACTATCTTTTCAACAATTACA
ATCACTTCTGCAACTGAAATGAATTTAACTGGTGTTCAAAAATTATCAAATTTATCAAGA
TTAAAATGGAAAACTGTTGANGGTAAAAACTANGATCATAAATCATCATCATCAACTAAA
GAAGATTCTTCAAA
Length of connected seq. 964
Full length Seq ID -
Full length Seq. -
Length of full length seq. -