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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHL143
Library VH
(Link to library)
Clone ID VHL143
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VHL143P
(Link to Original site)
Representative DNA sequence 
>VHL143 (VHL143Q) /CSM/VH/VHL1-B/VHL143Q.Seq.d/
ATTCGACTAATATAACATACTCCAGTAAAAAATGGATCTTTATCAAGCTTTGGCCAATGC
AAATCATCAATCTGAAAGTGTTCGTTCAGAAGCCGAATCATTTTTAACCAATGCATCACA
ACAAAACTTTCCATTATTTATTCACTCATTAACATTAGAACTTACAAATGAAGAGAGAGA
TGTACAAATTCGTCAATTAGCAGGTATTGTTTTAAAGAATAGTATTCACTCTAAAAATAG
CGAAAGAAATGAAATTTTAATTAAACAATGGGCATCAATTGAACCAAATGCTAGAAACGT
CATTAAAAATACTCTTTTACAAGGTTTAGGATCACCAAAATATGAAGCACGTCACACTGT
AGCTATTGTAATTTCACGTATTGGTCTTATTGAAATTCCATACGCAATGTGGGAAGAATT
AATCCCAGCATTATTTAAAAACATTGAAAGTGGTTCAGAAGGTATTAAACAATCTACTCT
TCAAACACTTGGTTATATTTGTGAAGAAATTGATCCAAATGTTATGTCAAAATATTCAGA
TAATGTATTAAGAGTTATTACAGATGGTATCAAAGATGAXXXXXXXXXXATTTCGAACCT
TACTTTTCAAATTTCCTTCCAATCCTTGTAAACTTCCTCAAGAATGTCGATTTTGGTTCC
GTAACAAACATTGCAATTGGTATCGTTGGTGATTTAGCTCGTGCTTTTGGTAAGAAATTC
TCTGGTGTTTGCGCTGAAATCGTTCCATTGATCGTTAGTGATCTCACCAATCCAAAACTC
TCTATGAATGCTAAACCAAGTGCTATCAGTTGTCTCTGTGATATCGCCATTAGTGTTGGT
GCCGATTTCATTCCTTTCCTTCCAATGGTTATGCCAATTCTTCATCAAGCCTCTACCACT
GAAATCGATGATGAAGACTTTTTAAATGAACTCCGTGAAACTATCTTCCAAACTTACACT
GGTATCATTCAGGGTCTCAAGAGTGATAATCAAATCGAAGAACTCAATCAATACATCAAT
CCAATGTTAGACTTTGTTGTACTTATAAATGATGATCCAGAACGTTATGATTCTGTTACT
TCTGCTGCCTTGGCCTTACTTGGTGATTTAGCTCAAGCTATGGGTGATAGTATTAGAAAT
CTTTTAAACAACAAAATAATTAGAGAATTTGTAAACAANGGTATTCAAAAAGGTATACCA
TATGC
sequence update 2002.10.25
Translated Amino Acid sequence 
fd*ynilq*KMDLYQALANANHQSESVRSEAESFLTNASQQNFPLFIHSLTLELTNEERD
VQIRQLAGIVLKNSIHSKNSERNEILIKQWASIEPNARNVIKNTLLQGLGSPKYEARHTV
AIVISRIGLIEIPYAMWEELIPALFKNIESGSEGIKQSTLQTLGYICEEIDPNVMSKYSD
NVLRVITDGIKD---

---FEPYFSNFLPILVNFLKNVDFGSVTNIAIGIVGDLARAFGKKFSGVCAEIVPLIVSD
LTNPKLSMNAKPSAISCLCDIAISVGADFIPFLPMVMPILHQASTTEIDDEDFLNELRET
IFQTYTGIIQGLKSDNQIEELNQYINPMLDFVVLINDDPERYDSVTSAALALLGDLAQAM
GDSIRNLLNNKIIREFVNXGIQKGIPY
Translated Amino Acid sequence (All Frames) 
Frame A:
irli*htpvkngslssfgqckssi*kcsfrsriifnqcittklsiiyslinirtyk*rer
ctnssisrycfke*ysl*k*rkk*nfn*tmgin*tkc*krh*kysftrfritki*stshc
sycnftywsy*nsirnvgrinpsii*kh*kwfrry*tiyssntwlyl*rn*skcyvkifr
*ciksyyrwyqr*---

---isnltfqisfqsl*tssrmsilvp*qtlqlvslvi*lvllvrnslvfalksfh*slv
ispiqnsl*mlnqvlsvvsvisplvlvpisflsfqwlcqffikplplksmmktf*mnsvk
lsskltlvsfrvsrviiksknsintsiqc*tllyl*mmiqnvmilllllpwpylvi*lkl
wvivleif*ttk*lenl*txvfkkvyhm

Frame B:
fd*ynilq*KMDLYQALANANHQSESVRSEAESFLTNASQQNFPLFIHSLTLELTNEERD
VQIRQLAGIVLKNSIHSKNSERNEILIKQWASIEPNARNVIKNTLLQGLGSPKYEARHTV
AIVISRIGLIEIPYAMWEELIPALFKNIESGSEGIKQSTLQTLGYICEEIDPNVMSKYSD
NVLRVITDGIKD---

---frtllfkfpsnpcklpqecrfwfrnkhcnwyrw*fsscfw*eilwclr*nrsidr**
shqsktlyec*tkcyqlsl*yrh*cwcrfhsfpsngyansssslyh*nr**rlfk*tp*n
ylpnlhwyhsgsqe**snrrtqsihqsnvrlcctyk**srtl*fcyfcclgltw*fsssy
g**y*ksfkqqnn*rickqxyskrytic

Frame C:
stnitysskkwifiklwpmqiinlkvfvqkpnhf*pmhhnktfhylfth*h*nlqmkrem
ykfvn*qvlf*rivftlkiakemkf*lnnghqlnqmletslkilfykv*dhqnmkhvtl*
ll*fhvlvllkfhtqcgkn*sqhylktlkvvqkvlnnllfkhlvifvkkliqmlcqniqi
my*ellqmvskm---

---FEPYFSNFLPILVNFLKNVDFGSVTNIAIGIVGDLARAFGKKFSGVCAEIVPLIVSD
LTNPKLSMNAKPSAISCLCDIAISVGADFIPFLPMVMPILHQASTTEIDDEDFLNELRET
IFQTYTGIIQGLKSDNQIEELNQYINPMLDFVVLINDDPERYDSVTSAALALLGDLAQAM
GDSIRNLLNNKIIREFVNXGIQKGIPY
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL143 (VHL143Q) /CSM/VH/VHL1-B/VHL143Q.Seq.d/                       2323   0.0
AHB470 (AHB470Q) /CSM/AH/AHB4-C/AHB470Q.Seq.d/                       1215   0.0
VHQ201 (VHQ201Q) /CSM/VH/VHQ2-A/VHQ201Q.Seq.d/                       1207   0.0
VHP879 (VHP879Q) /CSM/VH/VHP8-D/VHP879Q.Seq.d/                       1207   0.0
VHP826 (VHP826Q) /CSM/VH/VHP8-B/VHP826Q.Seq.d/                       1207   0.0
VHP718 (VHP718Q) /CSM/VH/VHP7-A/VHP718Q.Seq.d/                       1207   0.0
VHP288 (VHP288Q) /CSM/VH/VHP2-D/VHP288Q.Seq.d/                       1207   0.0
VHP264 (VHP264Q) /CSM/VH/VHP2-C/VHP264Q.Seq.d/                       1207   0.0
VHP188 (VHP188Q) /CSM/VH/VHP1-D/VHP188Q.Seq.d/                       1207   0.0
VHO577 (VHO577Q) /CSM/VH/VHO5-D/VHO577Q.Seq.d/                       1207   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ443552) Dictyostelium discoideum cDNA clone:ddv53e11, 3' ...  1215   0.0    1
(BJ348574) Dictyostelium discoideum cDNA clone:dda33l18, 3' ...  1215   0.0    1
(BJ446520) Dictyostelium discoideum cDNA clone:ddv63a02, 3' ...  1207   0.0    1
(BJ446504) Dictyostelium discoideum cDNA clone:ddv62n20, 3' ...  1207   0.0    1
(BJ446292) Dictyostelium discoideum cDNA clone:ddv62d08, 3' ...  1207   0.0    1
(BJ446219) Dictyostelium discoideum cDNA clone:ddv62d05, 3' ...  1207   0.0    1
(BJ446190) Dictyostelium discoideum cDNA clone:ddv61o22, 3' ...  1207   0.0    1
(BJ446189) Dictyostelium discoideum cDNA clone:ddv61o21, 3' ...  1207   0.0    1
(BJ446115) Dictyostelium discoideum cDNA clone:ddv61o16, 3' ...  1207   0.0    1
(BJ445855) Dictyostelium discoideum cDNA clone:ddv60i19, 3' ...  1207   0.0    1
dna update 2008.11.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001327_234(CP001327|pid:none) Micromonas sp. RCC299 chromosome...   118   5e-25
AE017344_109(AE017344|pid:none) Cryptococcus neoformans var. neo...   116   1e-24
BC052711_1(BC052711|pid:none) Mus musculus karyopherin (importin...   105   2e-21
(P70168) RecName: Full=Importin subunit beta-1; AltName: Full=Ka...   105   2e-21
CR954202_531(CR954202|pid:none) Ostreococcus tauri strain OTTH05...   105   2e-21
AK314780_1(AK314780|pid:none) Homo sapiens cDNA, FLJ95650, highl...   104   5e-21
PDBN(1IBR)B MOL_ID: 1;MOL_ID: 1; MOLECULE: RAN; MOLECULE: RAN; C...   104   5e-21
(Q14974) RecName: Full=Importin subunit beta-1; AltName: Full=Ka...   104   5e-21
(O18388) RecName: Full=Importin subunit beta; AltName: Full=Kary...   104   7e-21
AK229808_1(AK229808|pid:none) Arabidopsis thaliana mRNA for hypo...   103   1e-20
protein update 2009. 7.15
PSORT 

 psg: 0.76  gvh: 0.42  alm: 0.32  top: 0.37  tms: 0.07  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.02  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 24.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 16.0 %: nuclear
	  4.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for VHL143 is end
5' end seq. ID VHL143F
5' end seq. 
>VHL143F.Seq
ATTCGACTAATATAACATACTCCAGTAAAAAATGGATCTTTATCAAGCTTTGGCCAATGC
AAATCATCAATCTGAAAGTGTTCGTTCAGAAGCCGAATCATTTTTAACCAATGCATCACA
ACAAAACTTTCCATTATTTATTCACTCATTAACATTAGAACTTACAAATGAAGAGAGAGA
TGTACAAATTCGTCAATTAGCAGGTATTGTTTTAAAGAATAGTATTCACTCTAAAAATAG
CGAAAGAAATGAAATTTTAATTAAACAATGGGCATCAATTGAACCAAATGCTAGAAACGT
CATTAAAAATACTCTTTTACAAGGTTTAGGATCACCAAAATATGAAGCACGTCACACTGT
AGCTATTGTAATTTCACGTATTGGTCTTATTGAAATTCCATACGCAATGTGGGAAGAATT
AATCCCAGCATTATTTAAAAACATTGAAAGTGGTTCAGAAGGTATTAAACAATCTACTCT
TCAAACACTTGGTTATATTTGTGAAGAAATTGATCCAAATGTTATGTCAAAATATTCAGA
TAATGTATTAAGAGTTATTACAGATGGTATCAAAGATGANNNNNNNNNN
Length of 5' end seq. 589
3' end seq. ID VHL143Z
3' end seq. 
>VHL143Z.Seq
NNNNNNNNNNATTTCGAACCTTACTTTTCAAATTTCCTTCCAATCCTTGTAAACTTCCTC
AAGAATGTCGATTTTGGTTCCGTAACAAACATTGCAATTGGTATCGTTGGTGATTTAGCT
CGTGCTTTTGGTAAGAAATTCTCTGGTGTTTGCGCTGAAATCGTTCCATTGATCGTTAGT
GATCTCACCAATCCAAAACTCTCTATGAATGCTAAACCAAGTGCTATCAGTTGTCTCTGT
GATATCGCCATTAGTGTTGGTGCCGATTTCATTCCTTTCCTTCCAATGGTTATGCCAATT
CTTCATCAAGCCTCTACCACTGAAATCGATGATGAAGACTTTTTAAATGAACTCCGTGAA
ACTATCTTCCAAACTTACACTGGTATCATTCAGGGTCTCAAGAGTGATAATCAAATCGAA
GAACTCAATCAATACATCAATCCAATGTTAGACTTTGTTGTACTTATAAATGATGATCCA
GAACGTTATGATTCTGTTACTTCTGCTGCCTTGGCCTTACTTGGTGATTTAGCTCAAGCT
ATGGGTGATAGTATTAGAAATCTTTTAAACAACAAAATAATTAGAGAATTTGTAAACAAN
GGTATTCAAAAAGGTATACCATATGC
Length of 3' end seq. 626
Connected seq. ID VHL143P
Connected seq. 
>VHL143P.Seq
ATTCGACTAATATAACATACTCCAGTAAAAAATGGATCTTTATCAAGCTTTGGCCAATGC
AAATCATCAATCTGAAAGTGTTCGTTCAGAAGCCGAATCATTTTTAACCAATGCATCACA
ACAAAACTTTCCATTATTTATTCACTCATTAACATTAGAACTTACAAATGAAGAGAGAGA
TGTACAAATTCGTCAATTAGCAGGTATTGTTTTAAAGAATAGTATTCACTCTAAAAATAG
CGAAAGAAATGAAATTTTAATTAAACAATGGGCATCAATTGAACCAAATGCTAGAAACGT
CATTAAAAATACTCTTTTACAAGGTTTAGGATCACCAAAATATGAAGCACGTCACACTGT
AGCTATTGTAATTTCACGTATTGGTCTTATTGAAATTCCATACGCAATGTGGGAAGAATT
AATCCCAGCATTATTTAAAAACATTGAAAGTGGTTCAGAAGGTATTAAACAATCTACTCT
TCAAACACTTGGTTATATTTGTGAAGAAATTGATCCAAATGTTATGTCAAAATATTCAGA
TAATGTATTAAGAGTTATTACAGATGGTATCAAAGATGA----------ATTTCGAACCT
TACTTTTCAAATTTCCTTCCAATCCTTGTAAACTTCCTCAAGAATGTCGATTTTGGTTCC
GTAACAAACATTGCAATTGGTATCGTTGGTGATTTAGCTCGTGCTTTTGGTAAGAAATTC
TCTGGTGTTTGCGCTGAAATCGTTCCATTGATCGTTAGTGATCTCACCAATCCAAAACTC
TCTATGAATGCTAAACCAAGTGCTATCAGTTGTCTCTGTGATATCGCCATTAGTGTTGGT
GCCGATTTCATTCCTTTCCTTCCAATGGTTATGCCAATTCTTCATCAAGCCTCTACCACT
GAAATCGATGATGAAGACTTTTTAAATGAACTCCGTGAAACTATCTTCCAAACTTACACT
GGTATCATTCAGGGTCTCAAGAGTGATAATCAAATCGAAGAACTCAATCAATACATCAAT
CCAATGTTAGACTTTGTTGTACTTATAAATGATGATCCAGAACGTTATGATTCTGTTACT
TCTGCTGCCTTGGCCTTACTTGGTGATTTAGCTCAAGCTATGGGTGATAGTATTAGAAAT
CTTTTAAACAACAAAATAATTAGAGAATTTGTAAACAANGGTATTCAAAAAGGTATACCA
TATGC
Length of connected seq. 1195
Full length Seq ID -
Full length Seq. -
Length of full length seq. -