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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHL138
Library VH
(Link to library)
Clone ID VHL138
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12673-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHL138 (VHL138Q) /CSM/VH/VHL1-B/VHL138Q.Seq.d/
ACTGTTGGCCTACTGGTTTAAATTTAATTCCCTTTTGATATTAAACAATAACAATAATAA
TTTCTATAACAATAAAAATAATAATAGTTTTAATAAAAGATTTTATTCAACAAATAATTT
AATAATGTCAGTACCATCATCAGTAATAGAGAATCATCTTGTACCAAAGGAGATTCCAGT
TTATCGTTTAAATGCTCGTGAATCATTCAATCTATTAACAGAGAAAGAACAACTCTATGC
CCATCATATTAGTGTTGCCTGTTGGTGGGGTTCAAAAATTTGTCTTGGTCAAACATCTAT
TGAAAGTGGTCCAATCTTTAATCTCTTTCAAAATCTTTTCTCAATTCAAAATTTAAAATC
AACTGTTGTTCCAAATATTGTTTCTGAAGAAGAATATTCTGATTTATTATCATATGCTGC
AACTTTTTATGGTAATATGGGTAATTACTTAAGTTTTGGTGATAGTAAATTTATTCCAAX
XXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
LLAYWFKFNSLLILNNNNNNFYNNKNNNSFNKRFYSTNNLIMSVPSSVIENHLVPKEIPV
YRLNARESFNLLTEKEQLYAHHISVACWWGSKICLGQTSIESGPIFNLFQNLFSIQNLKS
TVVPNIVSEEEYSDLLSYAATFYGNMGNYLSFGDSKFIP---
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllv*i*fpfdikq*q**fl*q*k***f**kilfnk*fnnvstiisnressctkgdss
lsfkcs*iiqsinrerttlcpsy*ccllvgfknlswsniy*kwsnl*slsksflnskfki
nccskycf*rrif*fiiiccnflw*yg*llkfw***iys---


Frame B:
LLAYWFKFNSLLILNNNNNNFYNNKNNNSFNKRFYSTNNLIMSVPSSVIENHLVPKEIPV
YRLNARESFNLLTEKEQLYAHHISVACWWGSKICLGQTSIESGPIFNLFQNLFSIQNLKS
TVVPNIVSEEEYSDLLSYAATFYGNMGNYLSFGDSKFIP---


Frame C:
cwptglnlipf*y*titiiisitikiiivlikdfiqqii**cqyhhq**riilyqrrfqf
iv*mlvnhsiy*qrknnsmpiilvlpvggvqkfvlvkhllkvvqslisfkifsqfki*nq
llfqilflkkniliyyhmlqlfmviwvit*vlvivnlf---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHA874 (VHA874Q) /CSM/VH/VHA8-D/VHA874Q.Seq.d/                        700   0.0
VHP723 (VHP723Q) /CSM/VH/VHP7-A/VHP723Q.Seq.d/                        700   0.0
VHP328 (VHP328Q) /CSM/VH/VHP3-B/VHP328Q.Seq.d/                        700   0.0
VHP234 (VHP234Q) /CSM/VH/VHP2-B/VHP234Q.Seq.d/                        700   0.0
VHP185 (VHP185Q) /CSM/VH/VHP1-D/VHP185Q.Seq.d/                        700   0.0
VHO760 (VHO760Q) /CSM/VH/VHO7-C/VHO760Q.Seq.d/                        700   0.0
VHO670 (VHO670Q) /CSM/VH/VHO6-C/VHO670Q.Seq.d/                        700   0.0
VHN296 (VHN296Q) /CSM/VH/VHN2-D/VHN296Q.Seq.d/                        700   0.0
VHN272 (VHN272Q) /CSM/VH/VHN2-C/VHN272Q.Seq.d/                        700   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ424731) Dictyostelium discoideum cDNA clone:ddv53k09, 5' ...   700   0.0    2
(BJ332005) Dictyostelium discoideum cDNA clone:dda37j23, 5' ...   700   0.0    2
(BJ331931) Dictyostelium discoideum cDNA clone:dda37h13, 5' ...   700   0.0    2
(BJ337129) Dictyostelium discoideum cDNA clone:dda56j08, 5' ...   700   0.0    2
(BJ326352) Dictyostelium discoideum cDNA clone:dda16m05, 5' ...   700   0.0    2
(BJ422315) Dictyostelium discoideum cDNA clone:ddv45d18, 5' ...   700   0.0    2
(BJ427366) Dictyostelium discoideum cDNA clone:ddv62n05, 5' ...   700   0.0    1
(BJ427268) Dictyostelium discoideum cDNA clone:ddv61i21, 5' ...   700   0.0    1
(BJ427114) Dictyostelium discoideum cDNA clone:ddv61h07, 5' ...   700   0.0    1
(BJ427097) Dictyostelium discoideum cDNA clone:ddv61c10, 5' ...   700   0.0    1
dna update 2008.11.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(A7RZW4) RecName: Full=Dipeptidyl-peptidase 3;          EC=3.4.1...   105   4e-22
AK150126_1(AK150126|pid:none) Mus musculus bone marrow macrophag...    99   4e-20
BC066817_1(BC066817|pid:none) Mus musculus dipeptidylpeptidase 3...    99   4e-20
BC075771_1(BC075771|pid:none) Danio rerio dipeptidylpeptidase 3,...    99   4e-20
CR858366_1(CR858366|pid:none) Pongo abelii mRNA; cDNA DKFZp469J1...    98   1e-19
AK031020_1(AK031020|pid:none) Mus musculus adult male thymus cDN...    97   2e-19
AK150101_1(AK150101|pid:none) Mus musculus bone marrow macrophag...    97   2e-19
AK168195_1(AK168195|pid:none) Mus musculus CRL-1722 L5178Y-R cDN...    97   2e-19
(O55096) RecName: Full=Dipeptidyl-peptidase 3;          EC=3.4.1...    97   2e-19
AK039975_1(AK039975|pid:none) Mus musculus 0 day neonate thymus ...    97   2e-19
protein update 2009. 7.15
PSORT 

 psg: 0.82  gvh: 0.27  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for VHL138 is nuc
5' end seq. ID VHL138F
5' end seq. 
>VHL138F.Seq
ACTGTTGGCCTACTGGTTTAAATTTAATTCCCTTTTGATATTAAACAATAACAATAATAA
TTTCTATAACAATAAAAATAATAATAGTTTTAATAAAAGATTTTATTCAACAAATAATTT
AATAATGTCAGTACCATCATCAGTAATAGAGAATCATCTTGTACCAAAGGAGATTCCAGT
TTATCGTTTAAATGCTCGTGAATCATTCAATCTATTAACAGAGAAAGAACAACTCTATGC
CCATCATATTAGTGTTGCCTGTTGGTGGGGTTCAAAAATTTGTCTTGGTCAAACATCTAT
TGAAAGTGGTCCAATCTTTAATCTCTTTCAAAATCTTTTCTCAATTCAAAATTTAAAATC
AACTGTTGTTCCAAATATTGTTTCTGAAGAAGAATATTCTGATTTATTATCATATGCTGC
AACTTTTTATGGTAATATGGGTAATTACTTAAGTTTTGGTGATAGTAAATTTATTCCAAN
NNNNNNNNN
Length of 5' end seq. 489
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -