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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHL129
Library VH
(Link to library)
Clone ID VHL129
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11124-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHL129 (VHL129Q) /CSM/VH/VHL1-B/VHL129Q.Seq.d/
XXXXXXXXXXAATCAAGCCGATCCATTGGTTGAAGTTTACGTTCAAGAAACTGGTGAACA
TGTTATTGTAGCATCTGGTGAATTACATTTAGAACGTTGTATTCGTGATCTTAAAGAATC
ATTTGCAAAAATTAATGTTCATGTTTCTTCACCAATTGTACCATTTAGAGAAACTATTAT
AACACCAACAATAACTACACCAACTACCTCATCAACAATTACATCATCGTCATCTACAAC
AGCAGCAGCAACAGCAACAACAACAAATAATAGTGGTCAGCAATCACCACCACTTAAAGA
GATTATTACAGTTAAAACAGCAAATAAAAAAGTATCAGTAAAAATACGTGCAATTCCATT
ACCAAAGAATATTACAAATTTAATTGAACAACGTTCACAACAACTTAGAGATCTTTTCTT
GGGTGGTAAGAATACCAATAAAGAATTATCAGATAATAAAATTACAAAGAGAGAAGCTGA
ACAAGCAGAAAGAGAAGATTTCCAAAAAGAATTGGAAGAGGAATTAGAAAAATCTGGTGG
TGATTGGAAAAATGAAATTAAAAATATTTGGTCATTTGGTCCAAGACATATTGGTCCAAA
TTTATTATTAAATCATATTCCTGGTTATATTTATCACCTTATTGGAAACATTCTTTACAA
AGAGGATTCAAAAGAAATTAAAAAATNCAAAAACAACAACAACAA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---QADPLVEVYVQETGEHVIVASGELHLERCIRDLKESFAKINVHVSSPIVPFRETIIT
PTITTPTTSSTITSSSSTTAAATATTTNNSGQQSPPLKEIITVKTANKKVSVKIRAIPLP
KNITNLIEQRSQQLRDLFLGGKNTNKELSDNKITKREAEQAEREDFQKELEEELEKSGGD
WKNEIKNIWSFGPRHIGPNLLLNHIPGYIYHLIGNILYKEDSKEIKKXKNNNN
Translated Amino Acid sequence (All Frames) 
Frame A:
---ikpihwlkftfkklvnmll*hlvnyi*nvvfvilknhlqklmfmflhqlyhlekll*
hqq*lhqlphqqlhhrhlqqqqqqqqqqiivvsnhhhlkrllqlkqqikkyq*kyvqfhy
qrilqi*lnnvhnnleifswvvripiknyqiiklqreklnkqkekiskknwkrn*knlvv
igkmklkifghlvqdilvqiyy*iiflvifitlletfftkriqkklknxktttt


Frame B:
---ssrsig*slrsrnw*tcycsiw*itfrtlys*s*riickn*cscfftncti*rnyyn
tnnnytnylinnyiiviynsssnsnnnk**wsaittt*rdyys*nsk*ksiskntcnsit
keyykfn*ttfttt*rsflgw*eyq*riir**nykers*tsrkrrfpkrigrgirkiww*
lek*n*kylviwsktywskfiiksyswlylspywkhslqrgfkrn*kxqkqqqq


Frame C:
---QADPLVEVYVQETGEHVIVASGELHLERCIRDLKESFAKINVHVSSPIVPFRETIIT
PTITTPTTSSTITSSSSTTAAATATTTNNSGQQSPPLKEIITVKTANKKVSVKIRAIPLP
KNITNLIEQRSQQLRDLFLGGKNTNKELSDNKITKREAEQAEREDFQKELEEELEKSGGD
WKNEIKNIWSFGPRHIGPNLLLNHIPGYIYHLIGNILYKEDSKEIKKXKNNNN
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL636 (VHL636Q) /CSM/VH/VHL6-B/VHL636Q.Seq.d/                       1304   0.0
VHL129 (VHL129Q) /CSM/VH/VHL1-B/VHL129Q.Seq.d/                       1304   0.0
VHP350 (VHP350Q) /CSM/VH/VHP3-C/VHP350Q.Seq.d/                       1285   0.0
VHK862 (VHK862Q) /CSM/VH/VHK8-C/VHK862Q.Seq.d/                       1285   0.0
VHK320 (VHK320Q) /CSM/VH/VHK3-A/VHK320Q.Seq.d/                       1285   0.0
VHE493 (VHE493Q) /CSM/VH/VHE4-D/VHE493Q.Seq.d/                       1285   0.0
VHD615 (VHD615Q) /CSM/VH/VHD6-A/VHD615Q.Seq.d/                       1285   0.0
VHA344 (VHA344Q) /CSM/VH/VHA3-B/VHA344Q.Seq.d/                       1285   0.0
AHO352 (AHO352Q) /CSM/AH/AHO3-C/AHO352Q.Seq.d/                       1285   0.0
AHH125 (AHH125Q) /CSM/AH/AHH1-B/AHH125Q.Seq.d/                       1285   0.0
own update 2003. 1. 2
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC109947|AC109947.4 Rattus norvegicus clone CH230-291M13, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    62   3e-10  9
AL389901|AL389901.1 Neurospora crassa DNA linkage group II BAC clone B7F21.    60   2e-09  3
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    54   3e-09  13
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    44   3e-09  17
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    46   3e-09  10
AC007770|AC007770.5 Drosophila melanogaster, chromosome 3R, region 86C-86C, BAC clone BACR03J13, complete sequence.    50   4e-09  8
AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    42   5e-09  11
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    44   1e-08  15
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    52   1e-08  13
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    42   2e-08  12
dna update 2004. 3.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK056656_1(AK056656|pid:none) Homo sapiens cDNA FLJ32094 fis, cl...   130   3e-29
BC031852_1(BC031852|pid:none) Mus musculus elongation factor Tu ...   130   4e-29
(Q8C0D5) RecName: Full=Elongation factor Tu GTP-binding domain-c...   130   4e-29
BC045616_1(BC045616|pid:none) Mus musculus elongation factor Tu ...   130   4e-29
AK028676_1(AK028676|pid:none) Mus musculus 10 days neonate skin ...   130   4e-29
(Q7Z2Z2) RecName: Full=Elongation factor Tu GTP-binding domain-c...   129   7e-29
BX538332_1(BX538332|pid:none) Homo sapiens mRNA; cDNA DKFZp686D2...   129   7e-29
CU633900_457(CU633900|pid:none) Podospora anserina genomic DNA c...   101   3e-20
AB026655_1(AB026655|pid:none) Arabidopsis thaliana genomic DNA, ...    97   6e-19
CP001329_355(CP001329|pid:none) Micromonas sp. RCC299 chromosome...    93   7e-18
protein update 2009. 7.15
PSORT 

 psg: 0.75  gvh: 0.39  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for VHL129 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHL129Z
3' end seq. 
>VHL129Z.Seq
NNNNNNNNNNAATCAAGCCGATCCATTGGTTGAAGTTTACGTTCAAGAAACTGGTGAACA
TGTTATTGTAGCATCTGGTGAATTACATTTAGAACGTTGTATTCGTGATCTTAAAGAATC
ATTTGCAAAAATTAATGTTCATGTTTCTTCACCAATTGTACCATTTAGAGAAACTATTAT
AACACCAACAATAACTACACCAACTACCTCATCAACAATTACATCATCGTCATCTACAAC
AGCAGCAGCAACAGCAACAACAACAAATAATAGTGGTCAGCAATCACCACCACTTAAAGA
GATTATTACAGTTAAAACAGCAAATAAAAAAGTATCAGTAAAAATACGTGCAATTCCATT
ACCAAAGAATATTACAAATTTAATTGAACAACGTTCACAACAACTTAGAGATCTTTTCTT
GGGTGGTAAGAATACCAATAAAGAATTATCAGATAATAAAATTACAAAGAGAGAAGCTGA
ACAAGCAGAAAGAGAAGATTTCCAAAAAGAATTGGAAGAGGAATTAGAAAAATCTGGTGG
TGATTGGAAAAATGAAATTAAAAATATTTGGTCATTTGGTCCAAGACATATTGGTCCAAA
TTTATTATTAAATCATATTCCTGGTTATATTTATCACCTTATTGGAAACATTCTTTACAA
AGAGGATTCAAAAGAAATTAAAAAATNCAAAAACAACAACAACAA
Length of 3' end seq. 705
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -