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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHL109
Library VH
(Link to library)
Clone ID VHL109
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHL109 (VHL109Q) /CSM/VH/VHL1-A/VHL109Q.Seq.d/
AATTTTCCACTAAAAACATGATAAGTAATAGTATTAATGTAACTCCAAATAAAGAGTCAA
AGATGTATGTTGTAAAAAGAGATGGTACAAAAGAAAATGTATCATTTGATAAAATTACAT
CAAGAATTTCATTTTTATGTGAAATGGAACCAAAATTAAATTCAGATATAGTTGATCCAA
TTGAAGTAGCACAAAAAGTAGTTAGTGGAGTATTTCCAGGTGTAAAGACTACAGAATTGG
ATAATTTGGCAGCCGAGACAGCAGCATATATGTCAACACGTCATCCAGATTATGGTATTT
TGGCAGCACGTATTAGTGTATCGAATCTTCATAAACAAACTTCAAAGAGTTTTGTAGAGA
CAGTTAAGAAACAATATGAATTCATTAATCCAAAGAGCAATTTATTGGCACCATTGGTCA
GCAAGGAGCTCTATGAAATCGTAATGAAACATGGTGAGAGATTGGAGAGTGTCATTGATT
ATTATCGTGATTTCGATTACGATTTCTTTGGATTCAAAACATTGGAACGTTCCTATCTTC
ATCGTATCAATGGTAAAATTGTCGAGCGTCCACAACACATGTTGATGCGTGTCTCCATTG
XXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
FSTKNMISNSINVTPNKESKMYVVKRDGTKENVSFDKITSRISFLCEMEPKLNSDIVDPI
EVAQKVVSGVFPGVKTTELDNLAAETAAYMSTRHPDYGILAARISVSNLHKQTSKSFVET
VKKQYEFINPKSNLLAPLVSKELYEIVMKHGERLESVIDYYRDFDYDFFGFKTLERSYLH
RINGKIVERPQHMLMRVSI---
Translated Amino Acid sequence (All Frames) 
Frame A:
nfplkt**vivlm*lqiksqrcml*kemvqkkmyhliklhqefhfyvkwnqn*iqi*liq
lk*hkk*lveyfqv*rlqnwiiwqprqqhicqhviqimvfwqhvlvyrifinklqrvl*r
qlrnnmnsliqraiywhhwsarssmks**nmvrdwrvsliiivisitisldskhwnvpif
ivsmvklssvhntc*cvsp---


Frame B:
ifh*khdk**y*cnsk*rvkdvcckkrwykrkcii**nyiknfifm*ngtkikfrys*sn
*sstkss*wsisrckdyrig*fgsrdssiyvntssrlwyfgsty*ciess*tnfkefcrd
s*eti*ih*skeqfigtigqqgal*nrnetw*eigech*lls*frlrflwiqnigtflss
syqw*ncrastthvdaclh---


Frame C:
FSTKNMISNSINVTPNKESKMYVVKRDGTKENVSFDKITSRISFLCEMEPKLNSDIVDPI
EVAQKVVSGVFPGVKTTELDNLAAETAAYMSTRHPDYGILAARISVSNLHKQTSKSFVET
VKKQYEFINPKSNLLAPLVSKELYEIVMKHGERLESVIDYYRDFDYDFFGFKTLERSYLH
RINGKIVERPQHMLMRVSI---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL109 (VHL109Q) /CSM/VH/VHL1-A/VHL109Q.Seq.d/                       1189   0.0
VHP195 (VHP195Q) /CSM/VH/VHP1-D/VHP195Q.Seq.d/                       1156   0.0
VHC688 (VHC688Q) /CSM/VH/VHC6-D/VHC688Q.Seq.d/                       1156   0.0
SHI114 (SHI114Q) /CSM/SH/SHI1-A/SHI114Q.Seq.d/                       1156   0.0
SHH692 (SHH692Q) /CSM/SH/SHH6-D/SHH692Q.Seq.d/                       1156   0.0
SHE541 (SHE541Q) /CSM/SH/SHE5-B/SHE541Q.Seq.d/                       1156   0.0
SHA878 (SHA878Q) /CSM/SH/SHA8-D/SHA878Q.Seq.d/                       1156   0.0
SHA466 (SHA466Q) /CSM/SH/SHA4-C/SHA466Q.Seq.d/                       1156   0.0
CHG734 (CHG734Q) /CSM/CH/CHG7-B/CHG734Q.Seq.d/                       1156   0.0
AHR370 (AHR370Q) /CSM/AH/AHR3-C/AHR370Q.Seq.d/                       1156   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ424604) Dictyostelium discoideum cDNA clone:ddv53a03, 5' ...  1187   0.0    1
(BJ427285) Dictyostelium discoideum cDNA clone:ddv61m23, 5' ...  1154   0.0    1
(BJ419710) Dictyostelium discoideum cDNA clone:ddv36o22, 5' ...  1154   0.0    1
(BJ395778) Dictyostelium discoideum cDNA clone:dds40k03, 5' ...  1154   0.0    1
(BJ395699) Dictyostelium discoideum cDNA clone:dds39g24, 5' ...  1154   0.0    1
(BJ393946) Dictyostelium discoideum cDNA clone:dds33a11, 5' ...  1154   0.0    1
(BJ391976) Dictyostelium discoideum cDNA clone:dds25l20, 5' ...  1154   0.0    1
(BJ391605) Dictyostelium discoideum cDNA clone:dds24d18, 5' ...  1154   0.0    1
(BJ366347) Dictyostelium discoideum cDNA clone:ddc38l16, 5' ...  1154   0.0    1
(BJ365408) Dictyostelium discoideum cDNA clone:ddc35d09, 5' ...  1154   0.0    1
dna update 2008.11.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54Q71) RecName: Full=Ribonucleoside-diphosphate reductase larg...   348   5e-95
S34807(S34807) ribonucleoside-diphosphate reductase (EC 1.17.4.1...   209   4e-53
AM270068_2(AM270068|pid:none) Aspergillus niger contig An04c0070...   204   1e-51
AM920437_1772(AM920437|pid:none) Penicillium chrysogenum Wiscons...   202   6e-51
CR382139_247(CR382139|pid:none) Debaryomyces hansenii strain CBS...   199   4e-50
AE016817_343(AE016817|pid:none) Ashbya gossypii (= Eremothecium ...   197   2e-49
(P79732) RecName: Full=Ribonucleoside-diphosphate reductase larg...   192   8e-48
CU207366_3423(CU207366|pid:none) Gramella forsetii KT0803 comple...   192   8e-48
CU928165_187(CU928165|pid:none) Kluyveromyces thermotolerans str...   191   1e-47
BC044356_1(BC044356|pid:none) Danio rerio ribonucleotide reducta...   191   1e-47
protein update 2009. 7.15
PSORT 

 psg: 0.79  gvh: 0.38  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: mitochondrial
	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for VHL109 is mit
5' end seq. ID VHL109F
5' end seq. 
>VHL109F.Seq
AATTTTCCACTAAAAACATGATAAGTAATAGTATTAATGTAACTCCAAATAAAGAGTCAA
AGATGTATGTTGTAAAAAGAGATGGTACAAAAGAAAATGTATCATTTGATAAAATTACAT
CAAGAATTTCATTTTTATGTGAAATGGAACCAAAATTAAATTCAGATATAGTTGATCCAA
TTGAAGTAGCACAAAAAGTAGTTAGTGGAGTATTTCCAGGTGTAAAGACTACAGAATTGG
ATAATTTGGCAGCCGAGACAGCAGCATATATGTCAACACGTCATCCAGATTATGGTATTT
TGGCAGCACGTATTAGTGTATCGAATCTTCATAAACAAACTTCAAAGAGTTTTGTAGAGA
CAGTTAAGAAACAATATGAATTCATTAATCCAAAGAGCAATTTATTGGCACCATTGGTCA
GCAAGGAGCTCTATGAAATCGTAATGAAACATGGTGAGAGATTGGAGAGTGTCATTGATT
ATTATCGTGATTTCGATTACGATTTCTTTGGATTCAAAACATTGGAACGTTCCTATCTTC
ATCGTATCAATGGTAAAATTGTCGAGCGTCCACAACACATGTTGATGCGTGTCTCCATTG
NNNNNNNNNN
Length of 5' end seq. 610
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -