VHL106 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHL106
Library	VH (Link to library)
Clone ID	VHL106 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16260-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHL1-A/VHL106Q.Seq.d/
Representative seq. ID	VHL106P (Link to Original site)
Representative DNA sequence	>VHL106 (VHL106Q) /CSM/VH/VHL1-A/VHL106Q.Seq.d/ AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA CTGAAGATAAGGAATTCGGTGATGTCACTGTATCCCCAGXXXXXXXXXXATCTCGCTGAT AACCACGAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAAC GGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGAT TCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATG AGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGT GGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCC CCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGT GGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATC GGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACC GCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGG GCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGA AAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTGACAAATTCCACGAAAAACTCTAAA CAATTAAGTCGCACTTNAGTTTTCAAA
sequence update	2002.10.25
Translated Amino Acid sequence	LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE EAYLSFRRAIESVNVIVGNTEDKEFGDVTVSP--- ---LADNHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGV VCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEITA PENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQ CVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLTNSTKNSKQLSRTXVFK
Translated Amino Acid sequence (All Frames)	Frame A: nsrvqkkstkwlisqsikfvplwtvvkiseicllllmsitvkplyqilskelvllpik flvidichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnfsilsipqvtlis vqkllpsvllmvlslsiaskvfaykpklyyvkpslnvsnqsysstksivsynsntl kklislsvellnpsmsllvtlkirnsvmslypq--- ---islittngikmmptfglsvqkvtvpisssmspkvfnimklkilslvlsngppkkv lfvmktevsvsifmmspstlmpstevvvkssqllvvysmllnlppqlsnqstkll pqktllvvftlysivvevlllvknvvsvphyslskliyqynpsvspliyvptlpvklsh nvssiiglqlvlstkirkplkslpperekvpqksqiqiprktlnnvalxfs Frame B: tleckkskvqngfhnrsnschygpskyqkyvcycscrsrnhfirffnpkswyycrs fwyeiyvmsctrawyhhificitslrnakgrqitswlyftrifnqsyrfprsrfq frsnccppcywcfsryrlrrrclrtnrncitssrrtyqtslirqqsrsflirtpikh rslslfpsyirqchcwhrgirchcip--- ---sr*prmgkchehlvfrsrrrcqsprqchqrcsifenrffrwcfpmghqrrc cl*kherypfqslchpphchpqrwwsnhpncssctlccinclpnslrtnllsrnyc prkrywwyllctqssrycywrtsyrfpiilcqssftsirilrfhrftfphcrssfpt mclrslgfnwccqqreshsrfshqkekrfsprnprsdkfhekltikshxsfq Frame C: LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE EAYLSFRRAIESVNVIVGNTEDKEFGDVTVSP--- ---LADNHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGV VCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEITA PENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQ CVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLTNSTKNSKQLSRTXVFK
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHL106 (VHL106Q) /CSM/VH/VHL1-A/VHL106Q.Seq.d/ 2565 0.0 VHN474 (VHN474Q) /CSM/VH/VHN4-D/VHN474Q.Seq.d/ 1378 0.0 VHN434 (VHN434Q) /CSM/VH/VHN4-B/VHN434Q.Seq.d/ 1378 0.0 VHN240 (VHN240Q) /CSM/VH/VHN2-B/VHN240Q.Seq.d/ 1378 0.0 VHN227 (VHN227Q) /CSM/VH/VHN2-B/VHN227Q.Seq.d/ 1378 0.0 VHN141 (VHN141Q) /CSM/VH/VHN1-B/VHN141Q.Seq.d/ 1378 0.0 VHM866 (VHM866Q) /CSM/VH/VHM8-C/VHM866Q.Seq.d/ 1378 0.0 VHM813 (VHM813Q) /CSM/VH/VHM8-A/VHM813Q.Seq.d/ 1378 0.0 VHM761 (VHM761Q) /CSM/VH/VHM7-C/VHM761Q.Seq.d/ 1378 0.0 VHM754 (VHM754Q) /CSM/VH/VHM7-C/VHM754Q.Seq.d/ 1378 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ444897) Dictyostelium discoideum cDNA clone:ddv57d20, 3' ... 1378 0.0 1 (BJ444785) Dictyostelium discoideum cDNA clone:ddv57o10, 3' ... 1378 0.0 1 (BJ444733) Dictyostelium discoideum cDNA clone:ddv57e08, 3' ... 1378 0.0 1 (BJ444729) Dictyostelium discoideum cDNA clone:ddv57d10, 3' ... 1378 0.0 1 (BJ444713) Dictyostelium discoideum cDNA clone:ddv57a11, 3' ... 1378 0.0 1 (BJ444522) Dictyostelium discoideum cDNA clone:ddv56l13, 3' ... 1378 0.0 1 (BJ444516) Dictyostelium discoideum cDNA clone:ddv56j15, 3' ... 1378 0.0 1 (BJ444489) Dictyostelium discoideum cDNA clone:ddv56d18, 3' ... 1378 0.0 1 (BJ444359) Dictyostelium discoideum cDNA clone:ddv56j04, 3' ... 1378 0.0 1 (BJ444318) Dictyostelium discoideum cDNA clone:ddv56a06, 3' ... 1378 0.0 1
dna update	2008.11.25
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AY391422_1(AY391422\|pid:none) Danio rerio eukaryotic translation... 286 2e-75 BT071866_1(BT071866\|pid:none) Salmo salar clone ssal-rgf-501-088... 284 5e-75 AY069933_1(AY069933\|pid:none) Rana sylvatica eukaryotic translat... 284 5e-75 BT059038_1(BT059038\|pid:none) Salmo salar clone ssal-rgf-521-328... 284 5e-75 BT045031_1(BT045031\|pid:none) Salmo salar clone ssal-rgf-510-120... 283 8e-75 BT072304_1(BT072304\|pid:none) Salmo salar clone ssal-rgf-520-280... 283 1e-74 BC089730_1(BC089730\|pid:none) Xenopus tropicalis MGC108369 prote... 281 3e-74 AK298498_1(AK298498\|pid:none) Homo sapiens cDNA FLJ56548 complet... 279 1e-73 M19997_1(M19997\|pid:none) Human elongation factor 2 (EF-2) mRNA,... 279 1e-73 BC060707_1(BC060707\|pid:none) Mus musculus eukaryotic translatio... 279 2e-73
protein update	2009. 7.15
PSORT	psg: 0.71 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00 nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 48.0 %: cytoplasmic 36.0 %: nuclear 12.0 %: mitochondrial 4.0 %: vesicles of secretory system >> prediction for VHL106 is cyt
5' end seq. ID	VHL106F
5' end seq.	>VHL106F.Seq AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA CTGAAGATAAGGAATTCGGTGATGTCACTGTATCCCCAGNNNNNNNNNN
Length of 5' end seq.	649
3' end seq. ID	VHL106Z
3' end seq.	>VHL106Z.Seq NNNNNNNNNNATCTCGCTGATAACCACGAATGGGATAAAAATGATGCCATGAACATTTGG TCTTTCGGTCCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAA TATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGT GTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCAC ACTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTAT GCTGCTGAATTAACTGCCTCCCCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACT GCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTT ATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTA TTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCA CAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACT GAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTGACA AATTCCACGAAAAACTCTAAACAATTAAGTCGCACTTNAGTTTTCAAA
Length of 3' end seq.	708
Connected seq. ID	VHL106P
Connected seq.	>VHL106P.Seq AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA CTGAAGATAAGGAATTCGGTGATGTCACTGTATCCCCAG----------ATCTCGCTGAT AACCACGAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAAC GGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGAT TCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATG AGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGT GGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCC CCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGT GGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATC GGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACC GCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGG GCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGA AAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTGACAAATTCCACGAAAAACTCTAAA CAATTAAGTCGCACTTNAGTTTTCAAA
Length of connected seq.	1337
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas