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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHL105
Library VH
(Link to library)
Clone ID VHL105
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11114-1
Original site URL
Representative seq. ID VHL105P
(Link to Original site)
Representative DNA sequence 
>VHL105 (VHL105Q) /CSM/VH/VHL1-A/VHL105Q.Seq.d/
ATTTTAAAAATGGGTTTAGCAGGAGATTCATCATATGATTTTGGAGAAATTAAACCAGAT
GATTTAGATAAATCAATTACAAAATTTCAAAATATTTTATCAAATTGTATTAAAGATTTA
GAAACTGATGGAGAAGAAATAATAAAATTAGTGAAAACATTAATTTTAACTCAATCACCA
GGTGAAAGAACTACAGAATTCATAGAGGAATATTTGAAAAAGATTAGCAATCTAAGTAAT
ACGGAAGCATTGAATGTATCAAGAGTGTTATCACATCTATTGAATTTAATTAATGTTGCA
GAACAACATCATTTGGTTAGATCAGTTAGAGAATCATTCCTCAACAATGAAGATGATTTA
AAGTATTCATGTGAGAATACCATTCAACAATTATTAAATCAAGGTCTTGACAAGGAGAGT
GTTTACAATGCATTAATTCAACAAAAGATCGAACTTGTTTTAACGGCACATCCAACACAA
ATTATGAGACGTACTATAATTTCCAAGAATTCGGCAATGGGTGAAGCATTATCGTCATTG
GATAATCAGCAATTGACAATGTTTGAACGTGAAGATTATGAAAAGAGATTGATTAGAGAA
GTTGGTGGATCATGGTTAACCGATGAAGTTAGXXXXXXXXXXAAGTATAGATCAGTCGTA
AGAGAGAATCCATCATTCATTCAATACTTTAGAACTTCAACAGTCCAACNTGAAATGGTC
TACCTTAACATTGGTTCTCGTCCTGCCAAAAGAATAGCCGCAAAATCATTTGGATTGGAA
CATTTACGTGCTATTCCTTGAGTATTCAGTTTTTCACAAAATAGATTAAACTTACCAGTT
TGGTTAGGTATTGAAGATGCAATTTTAGAGGCAAAAACAAAAGGATGGGGATCTGATATC
AATGAAATGTACAAAGAATGGCCATTCTTTTCATCCACTATTGATTTGGTAGAGATGGTA
CTCTTGAAAACTGATCCTCAAATTTCATTACGTTACAATCAAATGTTAGTACCAGCTCAA
GTTCAACCTTTAGGTATTGAAATGATTGATGAACTCACAAAAACTACAAATGCAATCTTG
GAATTAACAAAACATAAAACTCTTCAACAAGATAATAAAATCCTTCAACATTTTGTTTCA
ATTCGTAGAACCTTTATGGATCCAATCAATTATATTCAAGTTGAAACCCTTAAAAGACTT
CGTTCAACTCAAAAACCAGATGGAACAAATGATGATGCGATCCAATATTAATTGATACTT
AATTATACTTTTAATGGTATTTCTGCGGTAGAAAAATAC
sequence update 2002.10.25
Translated Amino Acid sequence 
ILKMGLAGDSSYDFGEIKPDDLDKSITKFQNILSNCIKDLETDGEEIIKLVKTLILTQSP
GERTTEFIEEYLKKISNLSNTEALNVSRVLSHLLNLINVAEQHHLVRSVRESFLNNEDDL
KYSCENTIQQLLNQGLDKESVYNALIQQKIELVLTAHPTQIMRRTIISKNSAMGEALSSL
DNQQLTMFEREDYEKRLIREVGGSWLTDEV---

---KYRSVVRENPSFIQYFRTSTVQXEMVYLNIGSRPAKRIAAKSFGLEHLRAIP*vfsf
sqnrlnlpvwlgiedaileaktkgwgsdinemykewpffsstidlvemvllktdpqislr
ynqmlvpaqvqplgiemideltkttnaileltkhktlqqdnkilqhfvsirrtfmdpiny
iqvetlkrlrstqkpdgtnddaiqy*lilnytfngisaveky
Translated Amino Acid sequence (All Frames) 
Frame A:
ILKMGLAGDSSYDFGEIKPDDLDKSITKFQNILSNCIKDLETDGEEIIKLVKTLILTQSP
GERTTEFIEEYLKKISNLSNTEALNVSRVLSHLLNLINVAEQHHLVRSVRESFLNNEDDL
KYSCENTIQQLLNQGLDKESVYNALIQQKIELVLTAHPTQIMRRTIISKNSAMGEALSSL
DNQQLTMFEREDYEKRLIREVGGSWLTDEV---

---KYRSVVRENPSFIQYFRTSTVQXEMVYLNIGSRPAKRIAAKSFGLEHLRAIP*vfsf
sqnrlnlpvwlgiedaileaktkgwgsdinemykewpffsstidlvemvllktdpqislr
ynqmlvpaqvqplgiemideltkttnaileltkhktlqqdnkilqhfvsirrtfmdpiny
iqvetlkrlrstqkpdgtnddaiqy*lilnytfngisaveky

Frame B:
f*kwv*qeihhmileklnqmi*inqlqnfkifyqivlki*klmekk**n**kh*f*lnhq
vkelqns*rni*krlai*virkh*myqecyhiy*i*lmlqnniiwldqlenhsstmkmi*
sihvripfnny*ikvltrrvftmh*fnkrsnlf*rhiqhkl*dvl*fprirqwvkhyrhw
iisn*qclnvkimkrd*leklvdhg*pmkl---

---sidqs*erihhsfntlelqqsnxkwstltlvlvlpke*pqnhldwniyvlfleysvf
hkid*tyqfg*vlkmqf*rqkqkdgdlismkctknghsfhplliw*rwys*klilkfhyv
tikc*yqlkfnl*vlk*lmnsqklqmqswn*qniklfnkiiksfnilfqfveplwiqsii
fklkplkdfvqlknqmeqmmmrsnin*yliillmvflr*kn

Frame C:
fkngfsrrfii*fwrn*tr*fr*inykiskyfikly*rfrn*wrrnnkiseninfnsitr
*knyrihrgifekd*qsk*ygsieciksvitsiefn*ccrttsfg*is*riipqq*r*fk
vfm*eyhstiiksrs*qgeclqcinstkdrtcfngtsntnyetyynfqefgng*siivig
*saidnv*t*rl*keid*rswwimvnr*s*---

---v*isrkresiihsil*nfnspt*nglp*hwfsscqknsrkiiwigtftcyslsiqff
tk*ikltslvry*rcnfrgknkrmgi*yq*nvqrmailfihy*fgrdgtlen*ssnfitl
qsnvstsssstfry*nd**thknykcnlginkt*nsstr**npstfcfns*nlygsnqly
ss*np*ktsfnsktrwnk**cdpilidt*lyf*wyfcgrki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL105 (VHL105Q) /CSM/VH/VHL1-A/VHL105Q.Seq.d/                       2510   0.0
AHI865 (AHI865Q) /CSM/AH/AHI8-C/AHI865Q.Seq.d/                       2383   0.0
VHK432 (VHK432Q) /CSM/VH/VHK4-B/VHK432Q.Seq.d/                       1245   0.0
VHI520 (VHI520Q) /CSM/VH/VHI5-A/VHI520Q.Seq.d/                       1245   0.0
AHI617 (AHI617Q) /CSM/AH/AHI6-A/AHI617Q.Seq.d/                       1245   0.0
VHO704 (VHO704Q) /CSM/VH/VHO7-A/VHO704Q.Seq.d/                       1243   0.0
AHQ519 (AHQ519Q) /CSM/AH/AHQ5-A/AHQ519Q.Seq.d/                       1239   0.0
VHJ139 (VHJ139Q) /CSM/VH/VHJ1-B/VHJ139Q.Seq.d/                       1235   0.0
SHF259 (SHF259Q) /CSM/SH/SHF2-C/SHF259Q.Seq.d/                       1233   0.0
AHD621 (AHD621Q) /CSM/AH/AHD6-A/AHD621Q.Seq.d/                       1233   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ443496) Dictyostelium discoideum cDNA clone:ddv53i01, 3' ...  1296   0.0    1
(BJ424644) Dictyostelium discoideum cDNA clone:ddv53i01, 5' ...  1251   0.0    1
(BJ424127) Dictyostelium discoideum cDNA clone:ddv51p08, 5' ...  1243   0.0    1
(BJ334837) Dictyostelium discoideum cDNA clone:dda48a06, 5' ...  1243   0.0    1
(BJ426739) Dictyostelium discoideum cDNA clone:ddv60h01, 5' ...  1241   0.0    1
(BJ423105) Dictyostelium discoideum cDNA clone:ddv48g05, 5' ...  1241   0.0    1
(BJ339080) Dictyostelium discoideum cDNA clone:dda64e05, 5' ...  1237   0.0    1
(BJ334982) Dictyostelium discoideum cDNA clone:dda48b18, 5' ...  1235   0.0    1
(BJ423502) Dictyostelium discoideum cDNA clone:ddv49m09, 5' ...  1233   0.0    1
(BJ394291) Dictyostelium discoideum cDNA clone:dds34e16, 5' ...  1233   0.0    1
dna update 2008.11.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FB830099_1(FB830099|pid:none) Sequence 49372 from Patent WO20080...   175   3e-42
AC011914_12(AC011914|pid:none) Arabidopsis thaliana chromosome 1...   174   6e-42
AC008075_1(AC008075|pid:none) Arabidopsis thaliana chromosome 1 ...   174   6e-42
EF634318_1(EF634318|pid:none) Ricinus communis phosphoenolpyruva...   174   8e-42
AM424873_1(AM424873|pid:none) Vitis vinifera contig VV78X088960....   170   9e-41
(Q6R2V6) RecName: Full=Phosphoenolpyruvate carboxylase 2;       ...   167   8e-40
BT070413_1(BT070413|pid:none) Picea sitchensis clone WS02727_O18...   166   1e-39
(A5W881) RecName: Full=Phosphoenolpyruvate carboxylase;         ...   164   7e-39
CP000949_4086(CP000949|pid:none) Pseudomonas putida W619, comple...   164   7e-39
(Q88MR4) RecName: Full=Phosphoenolpyruvate carboxylase;         ...   164   7e-39
protein update 2009. 7.15
PSORT 

 psg: 0.66  gvh: 0.43  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for VHL105 is cyt
5' end seq. ID VHL105F
5' end seq. 
>VHL105F.Seq
ATTTTAAAAATGGGTTTAGCAGGAGATTCATCATATGATTTTGGAGAAATTAAACCAGAT
GATTTAGATAAATCAATTACAAAATTTCAAAATATTTTATCAAATTGTATTAAAGATTTA
GAAACTGATGGAGAAGAAATAATAAAATTAGTGAAAACATTAATTTTAACTCAATCACCA
GGTGAAAGAACTACAGAATTCATAGAGGAATATTTGAAAAAGATTAGCAATCTAAGTAAT
ACGGAAGCATTGAATGTATCAAGAGTGTTATCACATCTATTGAATTTAATTAATGTTGCA
GAACAACATCATTTGGTTAGATCAGTTAGAGAATCATTCCTCAACAATGAAGATGATTTA
AAGTATTCATGTGAGAATACCATTCAACAATTATTAAATCAAGGTCTTGACAAGGAGAGT
GTTTACAATGCATTAATTCAACAAAAGATCGAACTTGTTTTAACGGCACATCCAACACAA
ATTATGAGACGTACTATAATTTCCAAGAATTCGGCAATGGGTGAAGCATTATCGTCATTG
GATAATCAGCAATTGACAATGTTTGAACGTGAAGATTATGAAAAGAGATTGATTAGAGAA
GTTGGTGGATCATGGTTAACCGATGAAGTTAGNNNNNNNNNN
Length of 5' end seq. 642
3' end seq. ID VHL105Z
3' end seq. 
>VHL105Z.Seq
NNNNNNNNNNAAGTATAGATCAGTCGTAAGAGAGAATCCATCATTCATTCAATACTTTAG
AACTTCAACAGTCCAACNTGAAATGGTCTACCTTAACATTGGTTCTCGTCCTGCCAAAAG
AATAGCCGCAAAATCATTTGGATTGGAACATTTACGTGCTATTCCTTGAGTATTCAGTTT
TTCACAAAATAGATTAAACTTACCAGTTTGGTTAGGTATTGAAGATGCAATTTTAGAGGC
AAAAACAAAAGGATGGGGATCTGATATCAATGAAATGTACAAAGAATGGCCATTCTTTTC
ATCCACTATTGATTTGGTAGAGATGGTACTCTTGAAAACTGATCCTCAAATTTCATTACG
TTACAATCAAATGTTAGTACCAGCTCAAGTTCAACCTTTAGGTATTGAAATGATTGATGA
ACTCACAAAAACTACAAATGCAATCTTGGAATTAACAAAACATAAAACTCTTCAACAAGA
TAATAAAATCCTTCAACATTTTGTTTCAATTCGTAGAACCTTTATGGATCCAATCAATTA
TATTCAAGTTGAAACCCTTAAAAGACTTCGTTCAACTCAAAAACCAGATGGAACAAATGA
TGATGCGATCCAATATTAATTGATACTTAATTATACTTTTAATGGTATTTCTGCGGTAGA
AAAATAC
Length of 3' end seq. 667
Connected seq. ID VHL105P
Connected seq. 
>VHL105P.Seq
ATTTTAAAAATGGGTTTAGCAGGAGATTCATCATATGATTTTGGAGAAATTAAACCAGAT
GATTTAGATAAATCAATTACAAAATTTCAAAATATTTTATCAAATTGTATTAAAGATTTA
GAAACTGATGGAGAAGAAATAATAAAATTAGTGAAAACATTAATTTTAACTCAATCACCA
GGTGAAAGAACTACAGAATTCATAGAGGAATATTTGAAAAAGATTAGCAATCTAAGTAAT
ACGGAAGCATTGAATGTATCAAGAGTGTTATCACATCTATTGAATTTAATTAATGTTGCA
GAACAACATCATTTGGTTAGATCAGTTAGAGAATCATTCCTCAACAATGAAGATGATTTA
AAGTATTCATGTGAGAATACCATTCAACAATTATTAAATCAAGGTCTTGACAAGGAGAGT
GTTTACAATGCATTAATTCAACAAAAGATCGAACTTGTTTTAACGGCACATCCAACACAA
ATTATGAGACGTACTATAATTTCCAAGAATTCGGCAATGGGTGAAGCATTATCGTCATTG
GATAATCAGCAATTGACAATGTTTGAACGTGAAGATTATGAAAAGAGATTGATTAGAGAA
GTTGGTGGATCATGGTTAACCGATGAAGTTAG----------AAGTATAGATCAGTCGTA
AGAGAGAATCCATCATTCATTCAATACTTTAGAACTTCAACAGTCCAACNTGAAATGGTC
TACCTTAACATTGGTTCTCGTCCTGCCAAAAGAATAGCCGCAAAATCATTTGGATTGGAA
CATTTACGTGCTATTCCTTGAGTATTCAGTTTTTCACAAAATAGATTAAACTTACCAGTT
TGGTTAGGTATTGAAGATGCAATTTTAGAGGCAAAAACAAAAGGATGGGGATCTGATATC
AATGAAATGTACAAAGAATGGCCATTCTTTTCATCCACTATTGATTTGGTAGAGATGGTA
CTCTTGAAAACTGATCCTCAAATTTCATTACGTTACAATCAAATGTTAGTACCAGCTCAA
GTTCAACCTTTAGGTATTGAAATGATTGATGAACTCACAAAAACTACAAATGCAATCTTG
GAATTAACAAAACATAAAACTCTTCAACAAGATAATAAAATCCTTCAACATTTTGTTTCA
ATTCGTAGAACCTTTATGGATCCAATCAATTATATTCAAGTTGAAACCCTTAAAAGACTT
CGTTCAACTCAAAAACCAGATGGAACAAATGATGATGCGATCCAATATTAATTGATACTT
AATTATACTTTTAATGGTATTTCTGCGGTAGAAAAATAC
Length of connected seq. 1289
Full length Seq ID -
Full length Seq. -
Length of full length seq. -